Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Reverse (-)

32908823 .. 32908996

Gene Structure 174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0320600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGTCGAAGATTCGGCCGTTTCTGTGTACTTCGCGGCGAGGGGGATCAGGTTGGTGGCGGTGGCGCCTGAGGAGACGTCGACGGGGGTGGTGCCCGGAATGGAAGGGTAGGCTGTGGTGGCGTGGGAGAGGGTGGCCTGAAGGGAGAAGAGGAGAAGGAGAAGGATTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

57

Amino Acids

7.07

Weight (kDa)

11.94

Isoelectric Point (pI)

113.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	79
AccB1I	GGYRCC	2 cut(s)	63, 90
AccI	GTMKAC	1 cut(s)	79
AccII	CGCG	1 cut(s)	34
AciI	CCGC	2 cut(s)	34, 58
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	159
AcyI	GRCGYC	2 cut(s)	64, 76
AfaI	GTAC	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	2 cut(s)	14, 134
AspLEI	GCGC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	95
AxyI	CCTNAGG	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	95
BanI	GGYRCC	2 cut(s)	63, 90
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	67
BfoI	RGCGCY	1 cut(s)	67
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	95
BmiI	GGNNCC	2 cut(s)	65, 92
BmrFI	CCNGG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	95
BsaHI	GRCGYC	2 cut(s)	64, 76
Bse21I	CCTNAGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	59
BseRI	GAGGAG	2 cut(s)	85, 165
BseSI	GKGCMC	1 cut(s)	95
BseX3I	CGGCCG	1 cut(s)	14
Bsh1236I	CGCG	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	16, 136
BshNI	GGYRCC	2 cut(s)	63, 90
BsiEI	CGRYCG	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	16, 136
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	2 cut(s)	34, 58
BspANI	GGCC	2 cut(s)	16, 136
BspCNI	CTCAG	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	65, 92
BspPI	GGATC	1 cut(s)	52
BspT107I	GGYRCC	2 cut(s)	63, 90
BssMI	GATC	1 cut(s)	44
BssNI	GRCGYC	2 cut(s)	64, 76
Bst6I	CTCTTC	1 cut(s)	142
BstACI	GRCGYC	2 cut(s)	64, 76
BstDEI	CTNAG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	34
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	44
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	95
BstUI	CGCG	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	14
Bsu36I	CCTNAGG	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	16, 136
CfoI	GCGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	27
CviJI	RGCY	3 cut(s)	16, 112, 136
CviKI_1	RGCY	3 cut(s)	16, 112, 136
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	68
DinI	GGCGCC	1 cut(s)	65
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	14
EagI	CGGCCG	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
EclXI	CGGCCG	1 cut(s)	14
Eco52I	CGGCCG	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	68
EgeI	GGCGCC	1 cut(s)	65
EheI	GGCGCC	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	35
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	16, 136
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	2 cut(s)	64, 76
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	80
HindII	GTYRAC	1 cut(s)	80
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	27, 80
Hpy8I	GTNNAC	2 cut(s)	27, 80
Hpy99I	CGWCG	2 cut(s)	81, 84
HpyAV	CCTTC	4 cut(s)	97, 134, 149, 155
HpyCH4IV	ACGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	76
Hsp92I	GRCGYC	2 cut(s)	64, 76
HspAI	GCGC	1 cut(s)	64
KasI	GGCGCC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	44
LpnPI	CCDG	4 cut(s)	33, 80, 108, 150
MaeII	ACGT	1 cut(s)	76
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	2 cut(s)	19, 159
MhlI	GDGCHC	1 cut(s)	95
Mly113I	GGCGCC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	32, 63, 122, 143
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	118
NarI	GGCGCC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	44
NlaIV	GGNNCC	2 cut(s)	65, 92
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	36
PluTI	GGCGCC	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	65, 92
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SalI	GTCGAC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	2 cut(s)	52, 79
SfoI	GGCGCC	1 cut(s)	65
SgeI	CNNG	9 cut(s)	45, 50, 60, 79, 95, 106, 107, 134, 149
SgrDI	CGTCGACG	1 cut(s)	78
SsiI	CCGC	2 cut(s)	34, 58
SspDI	GGCGCC	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	93
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	5, 79
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	79
ZraI	GACGTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.