Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Reverse (-)

11715512 .. 11715949

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGGCCCCAGCTATCGAGTCCGTGCAATGCTTCGGTCGGAAGAAGACGGCGGTGGCAGTGACCTACTGCAAGCGCGGACGTGGCCTGATCAAGATCAACGGCTGCCCAATCGAGCTCGTCGAGCCTGAGATCCTTCGATTCAAGGCCTACGAGCCGATCCTGCTGCTCGGTCGACAGCGCTTCGCCGGCGTCGACATGAGGATCCGAGTCAAAGGCGGAGGCCACACCTCCCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCCCTCGTGGCGTTTTACCAGAAGTACGTTGACGAGCAAAGCAAGAAGGAGATCAAGGACATCCTGGTCAGGTACGACAGGACTCTCCTCGTCGCTGATCCCCGGCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGTGCCAGAGCCAGGTTCCAGAAGTCCTACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

146

Amino Acids

16.51

Weight (kDa)

10.21

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	13 - 145	5.7e-38	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	2 cut(s)	175, 195
AccII	CGCG	2 cut(s)	78, 402
AciI	CCGC	5 cut(s)	5, 53, 78, 219, 402
AclWI	GGATC	5 cut(s)	127, 154, 199, 212, 359
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	293, 341
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	330, 413
AluBI	AGCT	2 cut(s)	14, 118
AluI	AGCT	2 cut(s)	14, 118
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	5 cut(s)	127, 154, 199, 212, 359
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	5 cut(s)	6, 85, 147, 223, 267
ApeKI	GCWGC	3 cut(s)	105, 166, 375
AspLEI	GCGC	3 cut(s)	78, 183, 375
AspS9I	GGNCC	2 cut(s)	7, 268
AsuC2I	CCSGG	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	2 cut(s)	120, 384
BauI	CACGAG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	92, 153, 362
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	2 cut(s)	66, 118
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	2 cut(s)	332, 415
BclI	TGATCA	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	370
BfoI	RGCGCY	2 cut(s)	184, 376
BglI	GCCNNNNNGGC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	4 cut(s)	6, 106, 167, 376
BlsI	GCNGC	4 cut(s)	7, 107, 168, 377
Bme1390I	CCNGG	3 cut(s)	332, 370, 415
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	7, 268
BmiI	GGNNCC	4 cut(s)	9, 206, 406, 419
BmrFI	CCNGG	3 cut(s)	332, 370, 415
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	264, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse118I	RCCGGY	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	332, 415
BseDI	CCNNGG	2 cut(s)	264, 368
BseGI	GGATG	2 cut(s)	246, 327
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	3 cut(s)	92, 153, 362
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	2 cut(s)	78, 402
Bsh1285I	CGRYCG	2 cut(s)	40, 175
BshFI	GGCC	5 cut(s)	8, 87, 149, 225, 269
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	2 cut(s)	40, 175
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	189, 370
BslI	CCNNNNNNNGG	1 cut(s)	414
BsnI	GGCC	5 cut(s)	8, 87, 149, 225, 269
Bsp1286I	GDGCHC	2 cut(s)	120, 384
Bsp143I	GATC	8 cut(s)	90, 96, 132, 159, 204, 237, 318, 364
BspACI	CCGC	5 cut(s)	5, 53, 78, 219, 402
BspANI	GGCC	5 cut(s)	8, 87, 149, 225, 269
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	2 cut(s)	78, 402
BspLI	GGNNCC	4 cut(s)	9, 206, 406, 419
BspPI	GGATC	5 cut(s)	127, 154, 199, 212, 359
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	264, 368
BssMI	GATC	8 cut(s)	90, 96, 132, 159, 204, 237, 318, 364
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	2 cut(s)	332, 415
Bst4CI	ACNGT	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	74, 190, 380
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	246, 327
BstFNI	CGCG	2 cut(s)	78, 402
BstH2I	RGCGCY	2 cut(s)	184, 376
BstHHI	GCGC	3 cut(s)	78, 183, 375
BstKTI	GATC	8 cut(s)	93, 99, 135, 162, 207, 240, 321, 367
BstMBI	GATC	8 cut(s)	90, 96, 132, 159, 204, 237, 318, 364
BstMCI	CGRYCG	2 cut(s)	40, 175
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 84, 124, 163, 189, 275, 379
BstNI	CCWGG	2 cut(s)	332, 415
BstSCI	CCNGG	3 cut(s)	330, 368, 413
BstUI	CGCG	2 cut(s)	78, 402
BstV1I	GCAGC	3 cut(s)	92, 153, 362
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	3 cut(s)	132, 204, 237
BstYI	RGATCY	3 cut(s)	132, 204, 237
BsuRI	GGCC	5 cut(s)	8, 87, 149, 225, 269
BtgZI	GCGATG	1 cut(s)	244
BtrI	CACGTC	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	246, 327
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	3 cut(s)	74, 190, 380
CfoI	GCGC	3 cut(s)	78, 183, 375
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	7, 268
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	292, 340
CviAII	CATG	1 cut(s)	199
CviQI	GTAC	2 cut(s)	292, 340
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	8 cut(s)	92, 98, 134, 161, 206, 239, 320, 366
DpnII	GATC	8 cut(s)	90, 96, 132, 159, 204, 237, 318, 364
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	2 cut(s)	120, 384
Eco47III	AGCGCT	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	330, 413
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	2 cut(s)	120, 384
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	202
FaiI	YATR	1 cut(s)	200
FatI	CATG	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	2 cut(s)	175, 195
Fnu4HI	GCNGC	4 cut(s)	6, 106, 167, 376
FokI	GGATG	2 cut(s)	233, 314
FriOI	GRGCYC	2 cut(s)	120, 384
Fsp4HI	GCNGC	4 cut(s)	6, 106, 167, 376
GlaI	GCGC	3 cut(s)	77, 182, 374
GluI	GCNGC	4 cut(s)	6, 106, 167, 376
GsaI	CCCAGC	1 cut(s)	14
HaeII	RGCGCY	2 cut(s)	184, 376
HaeIII	GGCC	5 cut(s)	8, 87, 149, 225, 269
HapII	CCGG	2 cut(s)	189, 370
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	3 cut(s)	78, 183, 375
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	3 cut(s)	76, 181, 373
HinP1I	GCGC	3 cut(s)	76, 181, 373
HincII	GTYRAC	3 cut(s)	176, 196, 298
HindII	GTYRAC	3 cut(s)	176, 196, 298
HinfI	GANTC	4 cut(s)	20, 141, 210, 349
HpaII	CCGG	2 cut(s)	189, 370
Hpy166II	GTNNAC	3 cut(s)	176, 196, 298
Hpy188I	TCNGA	3 cut(s)	42, 209, 255
Hpy188III	TCNNGA	2 cut(s)	94, 421
Hpy8I	GTNNAC	3 cut(s)	176, 196, 298
Hpy99I	CGWCG	3 cut(s)	125, 197, 362
HpyAV	CCTTC	2 cut(s)	146, 307
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	2 cut(s)	82, 294
HpyCH4V	TGCA	2 cut(s)	28, 72
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 84, 124, 163, 189, 275, 379
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	2 cut(s)	82, 294
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	3 cut(s)	76, 181, 373
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	8 cut(s)	90, 96, 132, 159, 204, 237, 318, 364
Lsp1109I	GCAGC	3 cut(s)	92, 153, 362
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	2 cut(s)	82, 294
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	8 cut(s)	92, 98, 134, 161, 206, 239, 320, 366
MboI	GATC	8 cut(s)	90, 96, 132, 159, 204, 237, 318, 364
MboII	GAAGA	2 cut(s)	55, 58
MflI	RGATCY	3 cut(s)	132, 204, 237
MhlI	GDGCHC	2 cut(s)	120, 384
MlyI	GAGTC	3 cut(s)	29, 219, 343
MmeI	TCCRAC	1 cut(s)	20
MnlI	CCTC	5 cut(s)	195, 215, 241, 281, 365
MreI	CGCCGGCG	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	188
MspI	CCGG	2 cut(s)	189, 370
MspR9I	CCNGG	3 cut(s)	332, 370, 415
MvaI	CCWGG	2 cut(s)	332, 415
MvnI	CGCG	2 cut(s)	78, 402
MwoI	GCNNNNNNNGC	7 cut(s)	11, 84, 124, 163, 189, 275, 379
NaeI	GCCGGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	8 cut(s)	90, 96, 132, 159, 204, 237, 318, 364
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	4 cut(s)	9, 206, 406, 419
NmuCI	GTSAC	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 192
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	141
PkrI	GCNGC	4 cut(s)	7, 107, 168, 377
PleI	GAGTC	3 cut(s)	28, 218, 343
PpsI	GAGTC	3 cut(s)	28, 218, 343
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	330, 413
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	2 cut(s)	330, 413
PspN4I	GGNNCC	4 cut(s)	9, 206, 406, 419
PspPI	GGNCC	2 cut(s)	7, 268
PsuI	RGATCY	3 cut(s)	132, 204, 237
RsaI	GTAC	2 cut(s)	293, 341
RsaNI	GTAC	2 cut(s)	292, 340
SacI	GAGCTC	1 cut(s)	120
SalI	GTCGAC	2 cut(s)	174, 194
SatI	GCNGC	4 cut(s)	6, 106, 167, 376
Sau3AI	GATC	8 cut(s)	90, 96, 132, 159, 204, 237, 318, 364
Sau96I	GGNCC	2 cut(s)	7, 268
SchI	GAGTC	3 cut(s)	29, 219, 343
ScrFI	CCNGG	3 cut(s)	332, 370, 415
SduI	GDGCHC	2 cut(s)	120, 384
SetI	ASST	8 cut(s)	16, 68, 85, 120, 233, 297, 341, 419
SfaNI	GCATC	1 cut(s)	267
SgrAI	CRCCGGYG	1 cut(s)	188
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	5 cut(s)	5, 53, 78, 219, 402
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	3 cut(s)	330, 368, 413
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	2 cut(s)	85, 297
TaqI	TCGA	6 cut(s)	18, 114, 123, 139, 175, 195
TaqII	GACCGA	2 cut(s)	26, 161
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	141
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	3 cut(s)	105, 166, 375
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	2 cut(s)	13, 239
TspRI	CASTG	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmiI	GTMKAC	2 cut(s)	175, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.