Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Reverse (-)

17640031 .. 17640468

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1084000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGACTCCCGCAATCGAGTCAGTGCAGTGCTTCGGTCGTAAGAAGACCGCTGTCGCCGTCACCTACTGCAAGCGCGGCCGCGGCCTCATCAAGATCAACGGCTGCCCAATCGAGCTCGTCGAGCCCGAGATCCTCCGCTTCAAGGCCTACGAGCCCATCCTCCTCCTCGGCCGACAGCGCTTCGCCGGAGTCGACATGCGCATCCGCGTCAAGGGCGGCGGTCACACCTCACAGATCTACGCCATCCGCCAGAGCATCGCCAAGGCTCTCGTCGCTTTTTACCAGAAGTATGTCGATGAGCAGAGCAAGAAGGAGATTAAGGACATTCTGGTCCGGTATGACAGAACCCTCCTTGTTGCCGACCCGAGGCGCTGCGAGCCTAAGAAGTTCGGTGGTCGCGGTGCTCGTGCTAGGTTCCAGAAGTCTTACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

146

Amino Acids

16.54

Weight (kDa)

10.21

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	13 - 145	5.7e-38	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
Acc16I	TGCGCA	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	4 cut(s)	78, 84, 210, 402
AclWI	GGATC	1 cut(s)	127
AcoI	YGGCCR	2 cut(s)	79, 172
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	145, 214, 369
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	2 cut(s)	120, 409
AlwI	GGATC	1 cut(s)	127
Ama87I	CYCGRG	2 cut(s)	128, 367
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	4 cut(s)	79, 85, 147, 172
ApeKI	GCWGC	2 cut(s)	105, 375
AspLEI	GCGC	4 cut(s)	78, 183, 204, 375
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	2 cut(s)	128, 367
AvaII	GGWCC	1 cut(s)	334
BanII	GRGCYC	3 cut(s)	120, 129, 159
BauI	CACGAG	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	120, 409
BbvI	GCAGC	2 cut(s)	92, 362
BccI	CCATC	2 cut(s)	167, 254
BceAI	ACGGC	2 cut(s)	44, 118
BfaI	CTAG	1 cut(s)	414
BfoI	RGCGCY	2 cut(s)	184, 376
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	6 cut(s)	79, 82, 85, 106, 220, 376
BlsI	GCNGC	6 cut(s)	80, 83, 86, 107, 221, 377
Bme18I	GGWCC	1 cut(s)	334
BmeT110I	CYCGRG	2 cut(s)	128, 367
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	419
BmsI	GCATC	2 cut(s)	213, 267
BoxI	GACNNNNGTC	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	53
BsaJI	CCNNGG	4 cut(s)	82, 169, 264, 368
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 214, 369
BseDI	CCNNGG	4 cut(s)	82, 169, 264, 368
BseGI	GGATG	3 cut(s)	159, 204, 246
BseLI	CCNNNNNNNGG	3 cut(s)	145, 214, 369
BseRI	GAGGAG	2 cut(s)	155, 158
BseX3I	CGGCCG	2 cut(s)	79, 172
BseXI	GCAGC	2 cut(s)	92, 362
BsgI	GTGCAG	1 cut(s)	47
Bsh1236I	CGCG	4 cut(s)	78, 84, 210, 402
Bsh1285I	CGRYCG	3 cut(s)	40, 82, 175
BshFI	GGCC	4 cut(s)	81, 87, 149, 174
BsiEI	CGRYCG	3 cut(s)	40, 82, 175
BsiHKAI	GWGCWC	2 cut(s)	120, 409
BsiHKCI	CYCGRG	2 cut(s)	128, 367
BsiSI	CCGG	2 cut(s)	189, 337
BslI	CCNNNNNNNGG	3 cut(s)	145, 214, 369
BsnI	GGCC	4 cut(s)	81, 87, 149, 174
BsoBI	CYCGRG	2 cut(s)	128, 367
Bsp1286I	GDGCHC	4 cut(s)	120, 129, 159, 409
Bsp143I	GATC	3 cut(s)	96, 132, 237
BspANI	GGCC	4 cut(s)	81, 87, 149, 174
BspFNI	CGCG	4 cut(s)	78, 84, 210, 402
BspLI	GGNNCC	1 cut(s)	419
BspPI	GGATC	1 cut(s)	127
BssECI	CCNNGG	4 cut(s)	82, 169, 264, 368
BssMI	GATC	3 cut(s)	96, 132, 237
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	74, 380
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	3 cut(s)	159, 204, 246
BstFNI	CGCG	4 cut(s)	78, 84, 210, 402
BstH2I	RGCGCY	2 cut(s)	184, 376
BstHHI	GCGC	4 cut(s)	78, 183, 204, 375
BstKTI	GATC	3 cut(s)	99, 135, 240
BstMBI	GATC	3 cut(s)	96, 132, 237
BstMCI	CGRYCG	3 cut(s)	40, 82, 175
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 78, 84, 124, 180, 216, 275, 379
BstNSI	RCATGY	1 cut(s)	202
BstPAI	GACNNNNGTC	1 cut(s)	53
BstUI	CGCG	4 cut(s)	78, 84, 210, 402
BstV1I	GCAGC	2 cut(s)	92, 362
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	132, 237
BstYI	RGATCY	2 cut(s)	132, 237
BstZI	CGGCCG	2 cut(s)	79, 172
BsuRI	GGCC	4 cut(s)	81, 87, 149, 174
BtgI	CCRYGG	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	159, 204, 246
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	2 cut(s)	30, 35
Cac8I	GCNNGC	2 cut(s)	74, 380
CciNI	GCGGCCGC	1 cut(s)	79
CfoI	GCGC	4 cut(s)	78, 183, 204, 375
Cfr13I	GGNCC	1 cut(s)	334
Cfr42I	CCGCGG	1 cut(s)	85
CseI	GACGC	1 cut(s)	199
CviAII	CATG	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	3 cut(s)	98, 134, 239
DpnII	GATC	3 cut(s)	96, 132, 237
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	2 cut(s)	79, 172
EagI	CGGCCG	2 cut(s)	79, 172
EciI	GGCGGA	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	118
EclXI	CGGCCG	2 cut(s)	79, 172
Eco130I	CCWWGG	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	3 cut(s)	120, 129, 159
Eco47I	GGWCC	1 cut(s)	334
Eco47III	AGCGCT	1 cut(s)	182
Eco52I	CGGCCG	2 cut(s)	79, 172
Eco53kI	GAGCTC	1 cut(s)	118
Eco88I	CYCGRG	2 cut(s)	128, 367
EcoICRI	GAGCTC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	3 cut(s)	120, 129, 159
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	202
FaiI	YATR	3 cut(s)	200, 294, 342
FatI	CATG	1 cut(s)	198
FauI	CCCGC	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	6 cut(s)	79, 82, 85, 106, 220, 376
FokI	GGATG	3 cut(s)	146, 191, 233
FriOI	GRGCYC	3 cut(s)	120, 129, 159
Fsp4HI	GCNGC	6 cut(s)	79, 82, 85, 106, 220, 376
FspAI	RTGCGCAY	1 cut(s)	203
FspBI	CTAG	1 cut(s)	414
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	4 cut(s)	77, 182, 203, 374
GluI	GCNGC	6 cut(s)	79, 82, 85, 106, 220, 376
HaeII	RGCGCY	2 cut(s)	184, 376
HaeIII	GGCC	4 cut(s)	81, 87, 149, 174
HapII	CCGG	2 cut(s)	189, 337
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	4 cut(s)	78, 183, 204, 375
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	4 cut(s)	76, 181, 202, 373
HinP1I	GCGC	4 cut(s)	76, 181, 202, 373
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	3 cut(s)	7, 20, 192
HpaII	CCGG	2 cut(s)	189, 337
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	94, 421
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	125, 278
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	28, 72
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 78, 84, 124, 180, 216, 275, 379
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	4 cut(s)	76, 181, 202, 373
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	96, 132, 237
LpnPI	CCDG	6 cut(s)	202, 266, 299, 317, 350, 434
Lsp1109I	GCAGC	2 cut(s)	92, 362
LweI	GCATC	2 cut(s)	213, 267
MaeI	CTAG	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	61, 224
MalI	GATC	3 cut(s)	98, 134, 239
MboI	GATC	3 cut(s)	96, 132, 237
MboII	GAAGA	1 cut(s)	58
MflI	RGATCY	2 cut(s)	132, 237
MhlI	GDGCHC	4 cut(s)	120, 129, 159, 409
MlyI	GAGTC	2 cut(s)	29, 201
MnlI	CCTC	8 cut(s)	98, 146, 173, 176, 179, 241, 362, 363
MseI	TTAA	1 cut(s)	321
MspA1I	CMGCKG	2 cut(s)	53, 84
MspI	CCGG	2 cut(s)	189, 337
MvnI	CGCG	4 cut(s)	78, 84, 210, 402
MwoI	GCNNNNNNNGC	8 cut(s)	11, 78, 84, 124, 180, 216, 275, 379
NdeII	GATC	3 cut(s)	96, 132, 237
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	419
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	61, 224
NotI	GCGGCCGC	1 cut(s)	79
NsbI	TGCGCA	1 cut(s)	203
NspI	RCATGY	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	4 cut(s)	120, 126, 192, 406
PkrI	GCNGC	6 cut(s)	80, 83, 86, 107, 221, 377
PleI	GAGTC	2 cut(s)	28, 200
PpsI	GAGTC	2 cut(s)	28, 200
PshAI	GACNNNNGTC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	334
PsuI	RGATCY	2 cut(s)	132, 237
SacI	GAGCTC	1 cut(s)	120
SacII	CCGCGG	1 cut(s)	85
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	6 cut(s)	79, 82, 85, 106, 220, 376
Sau3AI	GATC	3 cut(s)	96, 132, 237
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	2 cut(s)	29, 201
SduI	GDGCHC	4 cut(s)	120, 129, 159, 409
SetI	ASST	4 cut(s)	68, 120, 233, 419
SfaNI	GCATC	2 cut(s)	213, 267
Sfr303I	CCGCGG	1 cut(s)	85
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	334
SseBI	AGGCCT	1 cut(s)	149
SspMI	CTAG	1 cut(s)	414
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	5 cut(s)	18, 114, 123, 195, 297
TaqII	GACCGA	1 cut(s)	26
TauI	GCSGC	4 cut(s)	81, 84, 87, 222
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	30, 35
TseFI	GTSAC	2 cut(s)	61, 224
TseI	GCWGC	2 cut(s)	105, 375
Tsp45I	GTSAC	2 cut(s)	61, 224
TspRI	CASTG	2 cut(s)	30, 35
VpaK11BI	GGWCC	1 cut(s)	334
XceI	RCATGY	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.