Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016823

Physical Location & Seq

Genomic Coordinates Forward (+)

35060731 .. 35060952

Gene Structure 222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0201900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGAAATCGACGCTGCCTACCCACCTCCGGTGAAGCGATCCGCGGTGTCCTCCTTGGACAATCTGGACAAACCAATCTTCGGCCGGCCGAGCTACGACGTCGTGATCGCCGGGAAGGTCTCCGGGCAGAAGTGGAAGCAGCCGCGGAAGCAGAGGTCGTCGGCAGTGCAGGTGAGCCAGAAGGGGACGACGTTCGAGAGAGGGAGAAGAACAAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016324 GO:0030427 GO:0035838 GO:0042995 GO:0044425 GO:0044459 GO:0044463 GO:0044464 GO:0045177 GO:0051286 GO:0071944 GO:0090404 GO:0090406 GO:0098590 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

73

Amino Acids

8.12

Weight (kDa)

10.49

Isoelectric Point (pI)

65.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016823)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19720
malus_domestica	MD13G1154600.v1.1 MD16G1154400.v1.1
prunus_persica	Prupe.1G117600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0425211
rosa_laevigata	RLG00000007385
rosa_multiflora	Rmu_sc0004716.1_g000007
rosa_roxburghii	Rroxscaffold_5G00367250
rosa_rugosa	Rorug04G0201900
rosa_samantha	Rh4AG258500 Rh4BG264300 Rh4CG276000 Rh4DG260400
rosa_wichuraiana	Rw4G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
AatII	GACGTC	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	160
AccII	CGCG	2 cut(s)	44, 145
AciI	CCGC	4 cut(s)	42, 44, 143, 145
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	2 cut(s)	82, 86
AcyI	GRCGYC	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	28, 80
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	82, 86
ApeKI	GCWGC	2 cut(s)	14, 139
AsuC2I	CCSGG	2 cut(s)	112, 124
AsuHPI	GGTGA	2 cut(s)	43, 184
BbvI	GCAGC	1 cut(s)	151
BcnI	CCSGG	2 cut(s)	112, 124
BcoDI	GTCTC	1 cut(s)	124
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	3 cut(s)	15, 140, 143
BlsI	GCNGC	3 cut(s)	16, 141, 144
Bme1390I	CCNGG	2 cut(s)	112, 124
BmrFI	CCNGG	2 cut(s)	112, 124
BpuMI	CCSGG	2 cut(s)	112, 124
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	3 cut(s)	42, 54, 143
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 80
Bse118I	RCCGGY	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	42, 54, 143
BseLI	CCNNNNNNNGG	2 cut(s)	28, 80
BseX3I	CGGCCG	2 cut(s)	82, 86
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	2 cut(s)	44, 145
Bsh1285I	CGRYCG	2 cut(s)	85, 89
BshFI	GGCC	2 cut(s)	84, 88
BsiEI	CGRYCG	2 cut(s)	85, 89
BsiSI	CCGG	4 cut(s)	29, 85, 111, 123
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	28, 80
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	84, 88
Bso31I	GGTCTC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	38, 105
BspACI	CCGC	4 cut(s)	42, 44, 143, 145
BspANI	GGCC	2 cut(s)	84, 88
BspFNI	CGCG	2 cut(s)	44, 145
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	42, 54, 143
BssMI	GATC	2 cut(s)	38, 105
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	86
BstDSI	CCRYGG	2 cut(s)	42, 143
BstFNI	CGCG	2 cut(s)	44, 145
BstKTI	GATC	2 cut(s)	41, 108
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	38, 105
BstMCI	CGRYCG	2 cut(s)	85, 89
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 148
BstSCI	CCNGG	2 cut(s)	110, 122
BstUI	CGCG	2 cut(s)	44, 145
BstV1I	GCAGC	1 cut(s)	151
BstZI	CGGCCG	2 cut(s)	82, 86
BsuRI	GGCC	2 cut(s)	84, 88
BtgI	CCRYGG	2 cut(s)	42, 143
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	84
Cfr42I	CCGCGG	2 cut(s)	45, 146
CseI	GACGC	1 cut(s)	20
CviJI	RGCY	5 cut(s)	84, 88, 93, 142, 177
CviKI_1	RGCY	5 cut(s)	84, 88, 93, 142, 177
DpnI	GATC	2 cut(s)	40, 107
DpnII	GATC	2 cut(s)	38, 105
EaeI	YGGCCR	2 cut(s)	82, 86
EagI	CGGCCG	2 cut(s)	82, 86
EclXI	CGGCCG	2 cut(s)	82, 86
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	124
Eco52I	CGGCCG	2 cut(s)	82, 86
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaqI	GGGAC	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	15, 140, 143
FseI	GGCCGGCC	1 cut(s)	88
Fsp4HI	GCNGC	3 cut(s)	15, 140, 143
GluI	GCNGC	3 cut(s)	15, 140, 143
HaeIII	GGCC	2 cut(s)	84, 88
HapII	CCGG	4 cut(s)	29, 85, 111, 123
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	99
HpaII	CCGG	4 cut(s)	29, 85, 111, 123
HphI	GGTGA	2 cut(s)	43, 184
Hpy188III	TCNNGA	3 cut(s)	65, 103, 196
Hpy99I	CGWCG	5 cut(s)	14, 101, 104, 163, 193
HpyAV	CCTTC	2 cut(s)	109, 175
HpyCH4IV	ACGT	2 cut(s)	99, 191
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 148
HpySE526I	ACGT	2 cut(s)	99, 191
Hsp92I	GRCGYC	1 cut(s)	99
KroI	GCCGGC	1 cut(s)	84
KroNI	GCCGGC	1 cut(s)	86
KspI	CCGCGG	2 cut(s)	45, 146
Kzo9I	GATC	2 cut(s)	38, 105
LpnPI	CCDG	7 cut(s)	42, 50, 98, 124, 136, 155, 191
Lsp1109I	GCAGC	1 cut(s)	151
MaeII	ACGT	2 cut(s)	99, 191
MalI	GATC	2 cut(s)	40, 107
MboI	GATC	2 cut(s)	38, 105
MboII	GAAGA	2 cut(s)	70, 219
MnlI	CCTC	4 cut(s)	36, 61, 147, 194
MroNI	GCCGGC	1 cut(s)	84
MspA1I	CMGCKG	2 cut(s)	44, 145
MspI	CCGG	4 cut(s)	29, 85, 111, 123
MspR9I	CCNGG	2 cut(s)	112, 124
MvnI	CGCG	2 cut(s)	44, 145
MwoI	GCNNNNNNNGC	2 cut(s)	90, 148
NaeI	GCCGGC	1 cut(s)	86
NciI	CCSGG	2 cut(s)	112, 124
NdeII	GATC	2 cut(s)	38, 105
NgoMIV	GCCGGC	1 cut(s)	84
NmeAIII	GCCGAG	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	160
PdiI	GCCGGC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	16, 141, 144
RigI	GGCCGGCC	1 cut(s)	88
SacII	CCGCGG	2 cut(s)	45, 146
SatI	GCNGC	3 cut(s)	15, 140, 143
Sau3AI	GATC	2 cut(s)	38, 105
ScrFI	CCNGG	2 cut(s)	112, 124
SetI	ASST	7 cut(s)	28, 95, 102, 120, 158, 174, 194
Sfr303I	CCGCGG	2 cut(s)	45, 146
SgrBI	CCGCGG	2 cut(s)	45, 146
SsiI	CCGC	4 cut(s)	42, 44, 143, 145
StyD4I	CCNGG	2 cut(s)	110, 122
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	2 cut(s)	102, 194
TaqI	TCGA	2 cut(s)	9, 195
TauI	GCSGC	1 cut(s)	145
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	2 cut(s)	14, 139
TspRI	CASTG	1 cut(s)	171
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.