Rorug04G0236900

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015851
Physical Location & Seq
Reverse (-)
40341904 .. 40347684
5781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0236900.1

Sequence Viewer

Length: 1239 bp
ATGGGCACAATCAAGGTCGGCAGCGACAAATCAAAACCCTCGCCGCCGCCGCCGCCGCAGCCCACGCCGACCACGTGCTCGACGTCGTGCACCGAAACCATCAATGGCTGCCACGAATTCAAGATCAGCGGGTACTCGCTCACCAAGGGCATGGGGATCGGGAAGTACGTCGGCTCCGAGCAGTTCAACGTCGGCGGGTACACGTGGGCCATATACTTCTACCCCGACGGCAAGAGCGTCGAGGACAACGCCAATTACGTGTCGCTGTTCATCGCGTTGGCCAGTGAAGGCAGCGATGTGAGGGCTTTGTTCGAGCTGACGCTTCTGGACCAGAGCGAGAGGCAACGCCACAAGGTCCATAGCCATTTTCTCAGGAGGCTCGAGAGTGGTCCTTACACGCTTAAATACCGAGGAAGCATGTGGGGTTATAAACGTTTCTTCAGAAGAAGTCTTTTAGAGACATCAGACCACCTTAAAGATGATTGCCTCATAATAAAGTGCCGCGTTGGGGTTGTTAGGACAAATACGGAGGGACCCAAAACATACGCTATAGCAGTAGCACCTTCCAACATGGGTCAGCATTTTGGTAAGCTTTTAGAAAGTGGAAAGGGGACGGATGTGAGTTTTGAAGTTGATCAGGAAGTATTTTCTGCACACAAAGTGGTGCTTGCTGGACGCTCACCTGTGTTCAGGGCACAACTGTTTGGTCCATTGAAAGATAAAAACTCTTGTTGCATAAAGGTTGAAGACATTGAGGCTCCTGTTTTTAAGGTTTTACTTCACTTCATCTACTGGGATGCTTTACCAGACATGGAAGAGCTTCTGGGGCTAAGTTCAAATTGGGCTTCTGCACAGACTACACTTATGGCCCAACATCTGCTGGCGGCAGCAGATCGTTATGCCCTCGAGAGGCTCAAAGTGCTGTGTGAGGCTAAACTTTGCGAGAATGTAGCCATAAACAATGTTGCAACAACATTGTCCTTGGCAGAGCAGCATCACTGTTTCCAACTTAAAGCTGTATGTCTCAAATTCATTGCAGTGCCTGAAAACTTAAGAGCTGTGATCGAGACTGATGGTTACAAGTACTTGACGGAAAGCTGCCCTTCGGTCATCACCGAATTACTGCAGTATGTTGCAAGGATTGGTGAGCATTCTTTTATTGCTGGTGGATATGGGAAAGGGACCTTGTTAGATGGCAGTGACATGCATGGAAGGCGGGTTAAGCCGAGATTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

412

Amino Acids

45.77

Weight (kDa)

8.16

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 38 - 169 2.1e-31 MATH domain
BTB PF00651 195 - 316 6.2e-19 BTB/POZ domain
BACK_BPM_SPOP PF24570 321 - 375 1e-26 BPM/SPOP, BACK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015851)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13150
fragaria_vesca FvH4_4g23180
malus_domestica MD13G1124100.v1.1 MD16G1124700.v1.1
prunus_persica Prupe.1G220900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0429531
rosa_laevigata RLG00000007063
rosa_multiflora Rmu_sc0013305.1_g000004
rosa_roxburghii Rroxscaffold_5G00371230
rosa_rugosa Rorug04G0236900
rosa_samantha Rh4AG292700 Rh4BG298400 Rh4CG313800 Rh4DG295300
rosa_wichuraiana Rw4G025330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AatII GACGTC 1 cut(s) 86
AccII CGCG 2 cut(s) 275, 504
AclI AACGTT 1 cut(s) 433
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 2 cut(s) 116, 1028
AcuI CTGAAG 1 cut(s) 424
AcvI CACGTG 2 cut(s) 75, 204
AcyI GRCGYC 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 661
AfaI GTAC 4 cut(s) 134, 167, 200, 1085
AfiI CCNNNNNNNGG 2 cut(s) 508, 909
AflII CTTAAG 1 cut(s) 1051
AflIII ACRYGT 2 cut(s) 201, 258
AgsI TTSAA 6 cut(s) 121, 187, 629, 715, 746, 837
AluBI AGCT 6 cut(s) 316, 592, 820, 1016, 1058, 1098
AluI AGCT 6 cut(s) 316, 592, 820, 1016, 1058, 1098
Alw21I GWGCWC 2 cut(s) 80, 92
Alw26I GTCTC 3 cut(s) 452, 1028, 1061
Alw44I GTGCAC 1 cut(s) 88
AlwI GGATC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 1043
Ama87I CYCGRG 2 cut(s) 380, 905
AoxI GGCC 3 cut(s) 207, 279, 867
ApaLI GTGCAC 1 cut(s) 88
ApeKI GCWGC 7 cut(s) 21, 58, 108, 291, 887, 991, 1098
ApoI RAATTY 2 cut(s) 116, 1028
Asp700I GAANNNNTTC 1 cut(s) 819
AspS9I GGNCC 8 cut(s) 207, 328, 355, 389, 533, 707, 868, 1182
AsuHPI GGTGA 4 cut(s) 133, 672, 1105, 1157
AvaI CYCGRG 2 cut(s) 380, 905
AvaII GGWCC 6 cut(s) 328, 355, 389, 533, 707, 1182
BaeGI GKGCMC 3 cut(s) 8, 92, 697
BalI TGGCCA 1 cut(s) 281
BbrPI CACGTG 2 cut(s) 75, 204
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 2 cut(s) 80, 92
BbvI GCAGC 7 cut(s) 33, 70, 95, 303, 899, 1003, 1085
BccI CCATC 3 cut(s) 107, 1067, 1187
BceAI ACGGC 1 cut(s) 244
BcgI CGANNNNNNTGC 4 cut(s) 139, 173, 220, 254
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 3 cut(s) 452, 1028, 1061
BfmI CTRYAG 2 cut(s) 549, 1124
BfrI CTTAAG 1 cut(s) 1051
BmcAI AGTACT 1 cut(s) 1085
Bme18I GGWCC 6 cut(s) 328, 355, 389, 533, 707, 1182
BmeT110I CYCGRG 2 cut(s) 380, 905
BmgT120I GGNCC 8 cut(s) 207, 328, 355, 389, 533, 707, 868, 1182
BmiI GGNNCC 5 cut(s) 175, 534, 535, 759, 1183
BmrI ACTGGG 1 cut(s) 802
BmsI GCATC 2 cut(s) 787, 1003
BmuI ACTGGG 1 cut(s) 802
BpiI GAAGAC 1 cut(s) 753
BsaAI YACGTR 3 cut(s) 75, 204, 259
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 144, 409, 981
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 508, 909
Bse1I ACTGG 2 cut(s) 282, 797
Bse3DI GCAATG 1 cut(s) 1032
BseDI CCNNGG 3 cut(s) 144, 409, 981
BseGI GGATG 2 cut(s) 622, 802
BseLI CCNNNNNNNGG 2 cut(s) 508, 909
BseMI GCAATG 1 cut(s) 1032
BseMII CTCAG 1 cut(s) 385
BseNI ACTGG 2 cut(s) 282, 797
BseSI GKGCMC 3 cut(s) 8, 92, 697
BseXI GCAGC 7 cut(s) 33, 70, 95, 303, 899, 1003, 1085
BsgI GTGCAG 2 cut(s) 636, 834
Bsh1236I CGCG 2 cut(s) 275, 504
BshFI GGCC 3 cut(s) 209, 281, 869
BsiHKAI GWGCWC 2 cut(s) 80, 92
BsiHKCI CYCGRG 2 cut(s) 380, 905
BslFI GGGAC 3 cut(s) 546, 625, 1195
BslI CCNNNNNNNGG 2 cut(s) 508, 909
BsmAI GTCTC 3 cut(s) 452, 1028, 1061
BsmFI GGGAC 3 cut(s) 546, 625, 1195
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 3 cut(s) 209, 281, 869
BsoBI CYCGRG 2 cut(s) 380, 905
Bsp1286I GDGCHC 4 cut(s) 8, 80, 92, 697
Bsp143I GATC 5 cut(s) 123, 156, 634, 892, 1062
BspANI GGCC 3 cut(s) 209, 281, 869
BspCNI CTCAG 1 cut(s) 384
BspFNI CGCG 2 cut(s) 275, 504
BspLI GGNNCC 5 cut(s) 175, 534, 535, 759, 1183
BspMAI CTGCAG 1 cut(s) 1128
BspPI GGATC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 810
BspTI CTTAAG 1 cut(s) 1051
BsrDI GCAATG 1 cut(s) 1032
BsrI ACTGG 2 cut(s) 282, 797
BssECI CCNNGG 3 cut(s) 144, 409, 981
BssMI GATC 5 cut(s) 123, 156, 634, 892, 1062
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 2 cut(s) 144, 981
Bst4CI ACNGT 2 cut(s) 702, 1001
Bst6I CTCTTC 1 cut(s) 810
BstACI GRCGYC 1 cut(s) 83
BstAFI CTTAAG 1 cut(s) 1051
BstBAI YACGTR 3 cut(s) 75, 204, 259
BstC8I GCNNGC 2 cut(s) 669, 882
BstDEI CTNAG 2 cut(s) 371, 830
BstF5I GGATG 2 cut(s) 622, 802
BstFNI CGCG 2 cut(s) 275, 504
BstKTI GATC 5 cut(s) 126, 159, 637, 895, 1065
BstMAI GTCTC 3 cut(s) 452, 1028, 1061
BstMBI GATC 5 cut(s) 123, 156, 634, 892, 1062
BstMWI GCNNNNNNNGC 9 cut(s) 49, 52, 55, 58, 64, 826, 919, 1213, 1222
BstNSI RCATGY 2 cut(s) 421, 1207
BstSFI CTRYAG 2 cut(s) 549, 1124
BstSLI GKGCMC 3 cut(s) 8, 92, 697
BstUI CGCG 2 cut(s) 275, 504
BstV1I GCAGC 7 cut(s) 33, 70, 95, 303, 899, 1003, 1085
BstV2I GAAGAC 1 cut(s) 753
BstXI CCANNNNNNTGG 1 cut(s) 151
BsuRI GGCC 3 cut(s) 209, 281, 869
BtgZI GCGATG 2 cut(s) 256, 309
BtsCI GGATG 2 cut(s) 622, 802
BtsI GCAGTG 2 cut(s) 1044, 1204
BtsIMutI CAGTG 4 cut(s) 289, 997, 1044, 1204
Cac8I GCNNGC 2 cut(s) 669, 882
CaiI CAGNNNCTG 1 cut(s) 1043
Cfr13I GGNCC 8 cut(s) 207, 328, 355, 389, 533, 707, 868, 1182
CseI GACGC 3 cut(s) 226, 328, 684
Csp6I GTAC 4 cut(s) 133, 166, 199, 1084
CviAII CATG 6 cut(s) 151, 418, 571, 811, 1204, 1208
CviQI GTAC 4 cut(s) 133, 166, 199, 1084
DdeI CTNAG 2 cut(s) 371, 830
DpnI GATC 5 cut(s) 125, 158, 636, 894, 1064
DpnII GATC 5 cut(s) 123, 156, 634, 892, 1062
DraIII CACNNNGTG 1 cut(s) 661
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
Eco130I CCWWGG 2 cut(s) 144, 981
Eco47I GGWCC 6 cut(s) 328, 355, 389, 533, 707, 1182
Eco57I CTGAAG 1 cut(s) 424
Eco72I CACGTG 2 cut(s) 75, 204
Eco88I CYCGRG 2 cut(s) 380, 905
EcoO109I RGGNCCY 2 cut(s) 533, 1182
EcoRI GAATTC 1 cut(s) 116
EcoT14I CCWWGG 2 cut(s) 144, 981
EcoT22I ATGCAT 1 cut(s) 1209
ErhI CCWWGG 2 cut(s) 144, 981
FaeI CATG 6 cut(s) 154, 421, 574, 814, 1207, 1211
FalI AAGNNNNNCTT 4 cut(s) 651, 683, 1087, 1119
FaqI GGGAC 3 cut(s) 546, 625, 1195
FatI CATG 6 cut(s) 150, 417, 570, 810, 1203, 1207
FauI CCCGC 3 cut(s) 122, 188, 1209
FbaI TGATCA 1 cut(s) 634
FokI GGATG 2 cut(s) 629, 809
HaeIII GGCC 3 cut(s) 209, 281, 869
HgaI GACGC 3 cut(s) 226, 328, 684
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 6 cut(s) 154, 421, 574, 814, 1207, 1211
HindIII AAGCTT 1 cut(s) 590
HphI GGTGA 4 cut(s) 133, 672, 1105, 1157
Hpy166II GTNNAC 2 cut(s) 90, 201
Hpy188I TCNGA 3 cut(s) 178, 443, 466
Hpy188III TCNNGA 8 cut(s) 121, 160, 326, 373, 382, 638, 907, 1066
Hpy8I GTNNAC 2 cut(s) 90, 201
Hpy99I CGWCG 6 cut(s) 85, 88, 173, 194, 230, 242
HpyAV CCTTC 4 cut(s) 281, 573, 1113, 1206
HpyCH4III ACNGT 2 cut(s) 702, 1001
HpyCH4IV ACGT 7 cut(s) 74, 83, 168, 189, 203, 258, 433
HpyCH4V TGCA 9 cut(s) 90, 653, 735, 851, 968, 1037, 1126, 1136, 1207
HpyF10VI GCNNNNNNNGC 9 cut(s) 49, 52, 55, 58, 64, 826, 919, 1213, 1222
HpyF3I CTNAG 2 cut(s) 371, 830
HpySE526I ACGT 7 cut(s) 74, 83, 168, 189, 203, 258, 433
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 6 cut(s) 154, 421, 574, 814, 1207, 1211
KflI GGGWCCC 1 cut(s) 533
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 5 cut(s) 123, 156, 634, 892, 1062
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 2 cut(s) 179, 763
Lsp1109I GCAGC 7 cut(s) 33, 70, 95, 303, 899, 1003, 1085
LweI GCATC 2 cut(s) 787, 1003
MaeII ACGT 7 cut(s) 74, 83, 168, 189, 203, 258, 433
MaeIII GTNAC 2 cut(s) 1076, 1199
MalI GATC 5 cut(s) 125, 158, 636, 894, 1064
MboI GATC 5 cut(s) 123, 156, 634, 892, 1062
MboII GAAGA 4 cut(s) 430, 456, 758, 827
MhlI GDGCHC 4 cut(s) 8, 80, 92, 697
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 5 cut(s) 116, 253, 838, 1028, 1118
MluNI TGGCCA 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 591, 1030
Mox20I TGGCCA 1 cut(s) 281
Mph1103I ATGCAT 1 cut(s) 1209
MroXI GAANNNNTTC 1 cut(s) 819
MscI TGGCCA 1 cut(s) 281
MseI TTAA 6 cut(s) 402, 474, 768, 1011, 1052, 1221
MslI CAYNNNNRTG 1 cut(s) 1037
Msp20I TGGCCA 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 129
MspCI CTTAAG 1 cut(s) 1051
Mva1269I GAATGC 1 cut(s) 1150
MvnI CGCG 2 cut(s) 275, 504
MwoI GCNNNNNNNGC 9 cut(s) 49, 52, 55, 58, 64, 826, 919, 1213, 1222
NdeII GATC 5 cut(s) 123, 156, 634, 892, 1062
NlaIII CATG 6 cut(s) 154, 421, 574, 814, 1207, 1211
NlaIV GGNNCC 5 cut(s) 175, 534, 535, 759, 1183
NmuCI GTSAC 1 cut(s) 1199
NsiI ATGCAT 1 cut(s) 1209
NspI RCATGY 2 cut(s) 421, 1207
PaeR7I CTCGAG 2 cut(s) 380, 905
PciSI GCTCTTC 1 cut(s) 810
PcsI WCGNNNNNNNCGW 6 cut(s) 71, 80, 165, 174, 234, 255
PctI GAATGC 1 cut(s) 1150
PdmI GAANNNNTTC 1 cut(s) 819
PmaCI CACGTG 2 cut(s) 75, 204
PmlI CACGTG 2 cut(s) 75, 204
Ppu21I YACGTR 3 cut(s) 75, 204, 259
PpuMI RGGWCCY 2 cut(s) 533, 1182
PsiI TTATAA 1 cut(s) 429
Psp1406I AACGTT 1 cut(s) 433
Psp5II RGGWCCY 2 cut(s) 533, 1182
PspCI CACGTG 2 cut(s) 75, 204
PspN4I GGNNCC 5 cut(s) 175, 534, 535, 759, 1183
PspPI GGNCC 8 cut(s) 207, 328, 355, 389, 533, 707, 868, 1182
PspPPI RGGWCCY 2 cut(s) 533, 1182
PstI CTGCAG 1 cut(s) 1128
PstNI CAGNNNCTG 1 cut(s) 1043
RsaI GTAC 4 cut(s) 134, 167, 200, 1085
RsaNI GTAC 4 cut(s) 133, 166, 199, 1084
RseI CAYNNNNRTG 1 cut(s) 1037
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 6 cut(s) 402, 474, 768, 1011, 1052, 1221
Sau3AI GATC 5 cut(s) 123, 156, 634, 892, 1062
Sau96I GGNCC 8 cut(s) 207, 328, 355, 389, 533, 707, 868, 1182
ScaI AGTACT 1 cut(s) 1085
SduI GDGCHC 4 cut(s) 8, 80, 92, 697
SfaNI GCATC 2 cut(s) 787, 1003
SfcI CTRYAG 2 cut(s) 549, 1124
Sfr274I CTCGAG 2 cut(s) 380, 905
SinI GGWCC 6 cut(s) 328, 355, 389, 533, 707, 1182
SlaI CTCGAG 2 cut(s) 380, 905
SmiMI CAYNNNNRTG 1 cut(s) 1037
SmlI CTYRAG 3 cut(s) 380, 905, 1051
SmoI CTYRAG 3 cut(s) 380, 905, 1051
Sse9I AATT 5 cut(s) 116, 253, 838, 1028, 1118
StyI CCWWGG 2 cut(s) 144, 981
TaaI ACNGT 2 cut(s) 702, 1001
TaiI ACGT 7 cut(s) 77, 86, 171, 192, 206, 261, 436
TaqI TCGA 6 cut(s) 80, 240, 312, 381, 906, 1065
TaqII GACCGA 1 cut(s) 1096
TasI AATT 5 cut(s) 116, 253, 838, 1028, 1118
TatI WGTACW 1 cut(s) 1083
TauI GCSGC 7 cut(s) 46, 49, 52, 55, 58, 504, 887
Tru1I TTAA 6 cut(s) 402, 474, 768, 1011, 1052, 1221
Tru9I TTAA 6 cut(s) 402, 474, 768, 1011, 1052, 1221
TscAI CASTG 4 cut(s) 289, 1004, 1044, 1204
TseFI GTSAC 1 cut(s) 1199
TseI GCWGC 7 cut(s) 21, 58, 108, 291, 887, 991, 1098
Tsp45I GTSAC 1 cut(s) 1199
TspDTI ATGAA 3 cut(s) 259, 775, 1021
TspGWI ACGGA 3 cut(s) 542, 629, 1106
TspRI CASTG 4 cut(s) 289, 1004, 1044, 1204
Vha464I CTTAAG 1 cut(s) 1051
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 6 cut(s) 328, 355, 389, 533, 707, 1182
XapI RAATTY 2 cut(s) 116, 1028
XceI RCATGY 2 cut(s) 421, 1207
XhoI CTCGAG 2 cut(s) 380, 905
XmnI GAANNNNTTC 1 cut(s) 819
ZraI GACGTC 1 cut(s) 84
ZrmI AGTACT 1 cut(s) 1085
Zsp2I ATGCAT 1 cut(s) 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.