Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013098

Physical Location & Seq

Genomic Coordinates Reverse (-)

43595318 .. 43595515

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0264500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGATTTCACGAAGATTTGACTCTATCACTTTCAACCATGTCCTAAGAGAAGCAAATTTTATAGCAGATGCTTGTGCAAACCTAGGTCGCAACTGCAGTGGAGAAAAAGTTTGGGGTAACTTTTTACCCCCGAGTGTCTCAAGAGCTGTACTTTTTGATCGATTAGGGTCTGGGTGCCTTAGAGGTGCTTGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0008509 GO:0009507 GO:0009526 GO:0009536 GO:0009673 GO:0009941 GO:0015075 GO:0015103 GO:0015114 GO:0015291 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHO4

Protein Analysis

65

Amino Acids

7.13

Weight (kDa)

8.97

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26570 AT3G26570
fragaria_vesca	FvH4_4g25560
malus_domestica	MD13G1101400.v1.1 MD16G1102200.v1.1
prunus_persica	Prupe.1G244400_v2.0.a1
pyrus_communis	pycom13g08850 pycom16g08650
rosa_chinensis	RchiOBHm_Chr4g0432971
rosa_laevigata	RLG00000006796
rosa_multiflora	Rmu_sc0001762.1_g000044
rosa_roxburghii	Rroxscaffold_5G00374350
rosa_rugosa	Rorug04G0264500
rosa_samantha	Rh4AG318400 Rh4BG326500 Rh4CG341800 Rh4DG321700
rosa_wichuraiana	Rw4G027680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	55
AspA2I	CCTAGG	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	130
AvrII	CCTAGG	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	94
BlnI	CCTAGG	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
BseCI	ATCGAT	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	174
BshVI	ATCGAT	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	157
BspDI	ATCGAT	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	176
BspMAI	CTGCAG	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	44, 179
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	160
BsuTUI	ATCGAT	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	103
ClaI	ATCGAT	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	149
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	1 cut(s)	146
CviKI_1	RGCY	1 cut(s)	146
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	2 cut(s)	44, 179
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	1 cut(s)	41
FaiI	YATR	2 cut(s)	39, 62
FatI	CATG	1 cut(s)	37
FspBI	CTAG	1 cut(s)	83
Hin1II	CATG	1 cut(s)	41
HinfI	GANTC	1 cut(s)	20
Hpy188III	TCNNGA	2 cut(s)	9, 141
HpyCH4V	TGCA	2 cut(s)	77, 96
HpyF3I	CTNAG	2 cut(s)	44, 179
Hsp92II	CATG	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	1 cut(s)	156
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	24
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	196
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	196
Sau3AI	GATC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	14
SetI	ASST	4 cut(s)	84, 88, 148, 187
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	94
SgeI	CNNG	8 cut(s)	21, 50, 84, 95, 142, 144, 153, 183
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	1 cut(s)	55
SspMI	CTAG	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	82
TaqI	TCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	55
TatI	WGTACW	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
TscAI	CASTG	1 cut(s)	103
TspRI	CASTG	1 cut(s)	103
XapI	RAATTY	1 cut(s)	55
XmaJI	CCTAGG	1 cut(s)	82
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.