Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011323

Physical Location & Seq

Genomic Coordinates Reverse (-)

55995814 .. 55997078

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0393400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCAACTCCGTCAAGTTCTTCCATACCAAACCACGACGTTTATTCCGCCCTGGCAACTCCGTCTCCACCCCTAAACTTCCGGACAATCCTCACCGAATCGAGGCGCATCATCAACGCCTACTCCCGCCACTTCTGGGCTCTCTCCATCGTCTTCCTCCTCCCCATCTCCGTCTCCTCCTTTGTCTACCCAACTCTCCAAAACCTCATCGCCGAATTGTTCAGGATTTCCAACTTTGACCAACCCTCTCTTCCCACCAAGACCCTACTCCTCGCTCTCGCTTTCGCCCTCTTCGTCTTCGTCTTCTCTCTCTTCGCTATCGGCTCAATCACGTACAGCGTCTTCCACGGCTTCTATGGCCGCCCGGTCAAGTTCATATCGGCTGTCCAATCCGTCAAGGTTTCGTTCTGGCCAGTATTGGGTACTGTTCTTGCTTCCCACATCGTGTTTTTATTGGTTGTTCTTGTTGCTGGGCTGTTCTTGTTCTTGGTGGTTGGAGGTTTTGAGATGGTTGGCCTCGAAATGGAGTTCTCTTCGCCTTATTTCGTTGGGCTCTGTGTTGTGGTTGCGATTCCTCTGTTGCTGGTTTTGTTGTATCTTCAAGTGAATTGGACTCTGGCTGGTGTAGTTGCTGTCCTCGAACCGCGTTGGGGGTTTAACGCATTGAGTCGGAGTGCGAATTTGATCAAGGGAATGCGAGGGGTGGCGTTGTCTTTGATGGTGTTTTTCGGGGCGTGGACTGGGATTTTGGGGTTCTACGTCTCGAAATCTGAGTTGGATTTGAATGGGGCTACTACTGATGGGTGGATGAATTGGATGAGTTTGGCATCTGTTTATCTGATTTTGTATTTTTCGATGGGTCATATGCTGGCACTGCTCTATCATGCTGCTGCGAATACGGTGTTGTATATGTATTGCAAGACTGTTCATGGAGAGCTTGCGTTGGAGATTGGTGAAAAGTTTGCGACCGAGTATGTGAGCCTGCCTTTCGATGATGGAAAAGTTCCTCATGTTGTTTCGGTTGCGAATGTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

345

Amino Acids

37.98

Weight (kDa)

7.09

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62390
fragaria_vesca	FvH4_3g01270 FvH4_3g01270 FvH4_3g01270
malus_domestica	MD05G1354100.v1.1 MD10G1328200.v1.1
prunus_persica	Prupe.4G013700_v2.0.a1 Prupe.4G013700_v2.0.a1
pyrus_communis	pycom05g32150 pycom10g27810
rosa_chinensis	RchiOBHm_Chr5g0001821
rosa_laevigata	RLG00000030974
rosa_multiflora	Rmu_ssc0000237.1_g000011
rosa_roxburghii	Rroxscaffold_1G00074530
rosa_rugosa	Rorug04G0393400
rosa_samantha	Rh5AG014600 Rh5BG018000 Rh5CG015700 Rh5DG016000
rosa_wichuraiana	Rw5G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	1 cut(s)	646
AccIII	TCCGGA	1 cut(s)	81
AciI	CCGC	4 cut(s)	48, 127, 361, 644
AcoI	YGGCCR	2 cut(s)	358, 410
AcsI	RAATTY	1 cut(s)	679
AdeI	CACNNNGTG	1 cut(s)	445
AfaI	GTAC	2 cut(s)	335, 424
AfiI	CCNNNNNNNGG	5 cut(s)	102, 136, 419, 523, 650
AgsI	TTSAA	2 cut(s)	602, 784
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	4 cut(s)	234, 266, 758, 790
AluBI	AGCT	1 cut(s)	937
AluI	AGCT	1 cut(s)	937
Alw26I	GTCTC	3 cut(s)	69, 178, 766
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	3 cut(s)	358, 410, 514
ApeKI	GCWGC	2 cut(s)	887, 890
ApoI	RAATTY	1 cut(s)	679
ArsI	GACNNNNNNTTYG	2 cut(s)	730, 762
AspLEI	GCGC	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	85, 965
BalI	TGGCCA	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	142, 555
BarI	GAAGNNNNNNTAC	2 cut(s)	326, 358
BbsI	GAAGAC	4 cut(s)	145, 289, 295, 334
BbvI	GCAGC	2 cut(s)	874, 877
BccI	CCATC	7 cut(s)	155, 173, 502, 712, 794, 850, 989
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	1 cut(s)	53
BclI	TGATCA	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	3 cut(s)	69, 178, 766
BisI	GCNGC	3 cut(s)	361, 888, 891
BlsI	GCNGC	3 cut(s)	362, 889, 892
Bme1390I	CCNGG	2 cut(s)	53, 365
BmrFI	CCNGG	2 cut(s)	53, 365
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	2 cut(s)	117, 836
BmuI	ACTGGG	1 cut(s)	750
BpiI	GAAGAC	4 cut(s)	145, 289, 295, 334
BpuMI	CCSGG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	51, 346
BsaWI	WCCGGW	1 cut(s)	81
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 107, 137
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 136, 419, 523, 650
Bse1I	ACTGG	2 cut(s)	413, 745
BseAI	TCCGGA	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	51, 346
BseGI	GGATG	2 cut(s)	813, 822
BseLI	CCNNNNNNNGG	5 cut(s)	102, 136, 419, 523, 650
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	2 cut(s)	413, 745
BseRI	GAGGAG	3 cut(s)	149, 166, 260
BseXI	GCAGC	2 cut(s)	874, 877
BseYI	CCCAGC	1 cut(s)	470
Bsh1236I	CGCG	1 cut(s)	646
Bsh1285I	CGRYCG	1 cut(s)	969
BshFI	GGCC	3 cut(s)	360, 412, 516
BsiEI	CGRYCG	1 cut(s)	969
BsiSI	CCGG	2 cut(s)	82, 365
BslI	CCNNNNNNNGG	5 cut(s)	102, 136, 419, 523, 650
BsmAI	GTCTC	3 cut(s)	69, 178, 766
BsmBI	CGTCTC	3 cut(s)	69, 178, 766
BsmI	GAATGC	1 cut(s)	699
BsnI	GGCC	3 cut(s)	360, 412, 516
Bsp1286I	GDGCHC	2 cut(s)	142, 555
Bsp13I	TCCGGA	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	684
BspACI	CCGC	4 cut(s)	48, 127, 361, 644
BspANI	GGCC	3 cut(s)	360, 412, 516
BspCNI	CTCAG	1 cut(s)	763
BspEI	TCCGGA	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	646
BsrI	ACTGG	2 cut(s)	413, 745
BssECI	CCNNGG	2 cut(s)	51, 346
BssMI	GATC	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	3 cut(s)	427, 901, 925
Bst6I	CTCTTC	4 cut(s)	255, 296, 317, 538
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	870, 939, 983
BstDEI	CTNAG	1 cut(s)	771
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	2 cut(s)	813, 822
BstFNI	CGCG	1 cut(s)	646
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	687
BstMAI	GTCTC	3 cut(s)	69, 178, 766
BstMBI	GATC	1 cut(s)	684
BstMCI	CGRYCG	1 cut(s)	969
BstMWI	GCNNNNNNNGC	2 cut(s)	357, 874
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	51, 363
BstUI	CGCG	1 cut(s)	646
BstV1I	GCAGC	2 cut(s)	874, 877
BstV2I	GAAGAC	4 cut(s)	145, 289, 295, 334
BsuRI	GGCC	3 cut(s)	360, 412, 516
BtgI	CCRYGG	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	813, 822
BtsI	GCAGTG	1 cut(s)	872
BtsIMutI	CAGTG	1 cut(s)	872
Cac8I	GCNNGC	3 cut(s)	870, 939, 983
CfoI	GCGC	1 cut(s)	108
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	334, 423
CviAII	CATG	4 cut(s)	884, 929, 1010, 1035
CviQI	GTAC	2 cut(s)	334, 423
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	1 cut(s)	686
DpnII	GATC	1 cut(s)	684
DraIII	CACNNNGTG	1 cut(s)	445
EaeI	YGGCCR	2 cut(s)	358, 410
Eam1104I	CTCTTC	4 cut(s)	255, 296, 317, 538
EarI	CTCTTC	4 cut(s)	255, 296, 317, 538
EciI	GGCGGA	1 cut(s)	37
Eco24I	GRGCYC	2 cut(s)	142, 555
EcoRII	CCWGG	1 cut(s)	51
EcoT38I	GRGCYC	2 cut(s)	142, 555
Esp3I	CGTCTC	3 cut(s)	69, 178, 766
FaeI	CATG	4 cut(s)	887, 932, 1013, 1038
FatI	CATG	4 cut(s)	883, 928, 1009, 1034
FauI	CCCGC	1 cut(s)	134
FauNDI	CATATG	1 cut(s)	864
FbaI	TGATCA	1 cut(s)	684
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	361, 888, 891
FokI	GGATG	2 cut(s)	820, 829
FriOI	GRGCYC	2 cut(s)	142, 555
Fsp4HI	GCNGC	3 cut(s)	361, 888, 891
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	3 cut(s)	361, 888, 891
GsaI	CCCAGC	1 cut(s)	474
HaeIII	GGCC	3 cut(s)	360, 412, 516
HapII	CCGG	2 cut(s)	82, 365
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	887, 932, 1013, 1038
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	4 cut(s)	98, 571, 613, 667
HpaII	CCGG	2 cut(s)	82, 365
HphI	GGTGA	2 cut(s)	85, 965
Hpy166II	GTNNAC	2 cut(s)	187, 738
Hpy188I	TCNGA	3 cut(s)	672, 772, 840
Hpy188III	TCNNGA	3 cut(s)	82, 223, 763
Hpy8I	GTNNAC	2 cut(s)	187, 738
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4III	ACNGT	3 cut(s)	427, 901, 925
HpyCH4IV	ACGT	3 cut(s)	39, 332, 759
HpyCH4V	TGCA	1 cut(s)	918
HpyF10VI	GCNNNNNNNGC	2 cut(s)	357, 874
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	3 cut(s)	39, 332, 759
Hsp92II	CATG	4 cut(s)	887, 932, 1013, 1038
HspAI	GCGC	1 cut(s)	106
Kpn2I	TCCGGA	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	1 cut(s)	684
Lsp1109I	GCAGC	2 cut(s)	874, 877
LweI	GCATC	2 cut(s)	117, 836
MaeII	ACGT	3 cut(s)	39, 332, 759
MalI	GATC	1 cut(s)	686
MboI	GATC	1 cut(s)	684
MhlI	GDGCHC	2 cut(s)	142, 555
MlsI	TGGCCA	1 cut(s)	412
MluCI	AATT	4 cut(s)	215, 607, 679, 811
MluNI	TGGCCA	1 cut(s)	412
MlyI	GAGTC	2 cut(s)	607, 676
MmeI	TCCRAC	5 cut(s)	255, 475, 650, 756, 924
Mox20I	TGGCCA	1 cut(s)	412
MroI	TCCGGA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	412
MseI	TTAA	1 cut(s)	657
Msp20I	TGGCCA	1 cut(s)	412
MspI	CCGG	2 cut(s)	82, 365
MspR9I	CCNGG	2 cut(s)	53, 365
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	646
MwoI	GCNNNNNNNGC	2 cut(s)	357, 874
NciI	CCSGG	1 cut(s)	365
NdeI	CATATG	1 cut(s)	864
NdeII	GATC	1 cut(s)	684
NlaIII	CATG	4 cut(s)	887, 932, 1013, 1038
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PctI	GAATGC	1 cut(s)	699
PfeI	GAWTC	2 cut(s)	98, 571
PkrI	GCNGC	3 cut(s)	362, 889, 892
PleI	GAGTC	2 cut(s)	607, 675
PpsI	GAGTC	2 cut(s)	607, 675
Ppu21I	YACGTR	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	51
RsaI	GTAC	2 cut(s)	335, 424
RsaNI	GTAC	2 cut(s)	334, 423
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	3 cut(s)	361, 888, 891
Sau3AI	GATC	1 cut(s)	684
SchI	GAGTC	2 cut(s)	607, 676
ScrFI	CCNGG	2 cut(s)	53, 365
SduI	GDGCHC	2 cut(s)	142, 555
SetI	ASST	7 cut(s)	42, 207, 335, 402, 502, 762, 939
SfaNI	GCATC	2 cut(s)	117, 836
Sse9I	AATT	4 cut(s)	215, 607, 679, 811
SsiI	CCGC	4 cut(s)	48, 127, 361, 644
StyD4I	CCNGG	2 cut(s)	51, 363
TaaI	ACNGT	3 cut(s)	427, 901, 925
TaiI	ACGT	3 cut(s)	42, 335, 762
TaqI	TCGA	6 cut(s)	101, 519, 639, 764, 854, 990
TaqII	GACCGA	1 cut(s)	983
TasI	AATT	4 cut(s)	215, 607, 679, 811
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	2 cut(s)	98, 571
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	1 cut(s)	879
TseI	GCWGC	2 cut(s)	887, 890
TspDTI	ATGAA	3 cut(s)	364, 824, 917
TspGWI	ACGGA	3 cut(s)	51, 160, 382
TspRI	CASTG	1 cut(s)	879
XapI	RAATTY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.