Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015781

Physical Location & Seq

Genomic Coordinates Forward (+)

57088255 .. 57089310

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0407600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCGTCGCCGTCGATCACCGCCGTCTCTCTCCTCATCCTCCTCTTCTCCCTCCTCTCTCTCTCCTCCGCTCTCCCCTCCCGCAGCATCCTCAACGCCGCCGAAGTCCTCTCCGATTCCGGCTACCTCTCCATGGCTCTCACTCTCGAGGTCGTCTCTCAGTCCCTCGTCCCCAAGTCGCCGTCGCTCACCATATTTGCGCCTCCGGACTCCGCCTTCAAGCGAGCCGGCCAGCCCTCCCTCTCTCTCCTCCAATTCCACTTCGCCCCTCTCGCTCTCCCCCTCCAAACCCTAAAATCGCTCCCCGCCGGCACCAAGATCCCGACTCTCCTCTCCGGCAGCTCCCTCGTCGTCACCTCGCCTTCTTCCGGCACCGGAATTTCTCTCAACGGCGTCAGGGTCACAACCGCCGCCTCGCCGATCTACGACGACGGGTTCCTGATCATCCTCGGAGTCGAGGACTTCTTCGACCCGAACTTCCATGCTCCCGCCCCGACCCGAATTCCGGTCTCGGATCCGATGTGCGGGTCGCCTTCGTCGAACGGTACAAGCACGATCGGGTTTCCGGCGGCTTCTTGGTTTGAAGGAGCCAAAGGCGTGATGAGGTCCAACGGATACAGAGTGATGGCTTCGTTTCTTGATCTGCAGCTCATGGGGTTCAAGAACCCTCCGAGTTCGTTGACCGTCTTTGTTCCGGTTGACCAGGCGGTGGAGAATCCTCTACTGGACCCGTCGATCTTTCTACGACACGTCGTTCCTTGCCGGCTTGTTTGGTCCGATTTGGTGAATTTCAGTGAAGGGACGGTGCTTCCAACCTACATGGCGGGGTTCACCATCAGAATCTCAAGAAACGGCGACGTTTTGCTGCTAAACGAAGTTCCGGTGTACTATGCAAACATGTATTACAGCGACTCCGTTGTGGTTCATGGTCTCCAGGAGAGTCTTGTCATGCCGGCAGAGGCGCAAGAAGAAGCTGCAGAGGAGTCTTCACAGGAAGAAGCTGGGAGTGAAACCAGTGATGATTCACTTCTAATGGATGATGACAGTGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0016787 GO:0016788 GO:0030234 GO:0030312 GO:0030599 GO:0031090 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046910 GO:0050790 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098588 GO:0098772 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

351

Amino Acids

37.35

Weight (kDa)

4.38

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	222 - 315	3.9e-06	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11580 AT1G11580
fragaria_vesca	FvH4_3g02560
malus_domestica	MD05G1341800.v1.1
prunus_persica	Prupe.4G025200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0003871
rosa_laevigata	RLG00000031185
rosa_multiflora	Rmu_sc0011733.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072100
rosa_rugosa	Rorug04G0407600
rosa_samantha	Rh5AG035100 Rh5BG033600 Rh5CG037500 Rh5DG033800
rosa_wichuraiana	Rw5G003210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	311, 371
AccB7I	CCANNNNNTGG	1 cut(s)	709
AccBSI	CCGCTC	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	205
AclWI	GGATC	3 cut(s)	313, 509, 522
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	4 cut(s)	378, 501, 787, 1049
AcyI	GRCGYC	2 cut(s)	5, 393
AfaI	GTAC	2 cut(s)	547, 887
AfiI	CCNNNNNNNGG	5 cut(s)	133, 368, 505, 524, 709
AflIII	ACRYGT	2 cut(s)	748, 897
AgsI	TTSAA	3 cut(s)	220, 584, 661
AjiI	CACGTC	1 cut(s)	751
AjnI	CCWGG	2 cut(s)	702, 933
AluBI	AGCT	4 cut(s)	342, 649, 974, 1001
AluI	AGCT	4 cut(s)	342, 649, 974, 1001
Alw26I	GTCTC	4 cut(s)	31, 160, 514, 935
AlwI	GGATC	3 cut(s)	313, 509, 522
Ama87I	CYCGRG	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	5 cut(s)	84, 339, 646, 865, 974
ApoI	RAATTY	4 cut(s)	378, 501, 787, 1049
AspLEI	GCGC	2 cut(s)	202, 964
AspS9I	GGNCC	3 cut(s)	606, 727, 774
AsuHPI	GGTGA	5 cut(s)	10, 181, 346, 796, 823
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	3 cut(s)	606, 727, 774
BamHI	GGATCC	1 cut(s)	514
BanI	GGYRCC	2 cut(s)	311, 371
BbsI	GAAGAC	1 cut(s)	978
BbvI	GCAGC	5 cut(s)	96, 351, 658, 852, 961
BccI	CCATC	2 cut(s)	619, 842
BceAI	ACGGC	4 cut(s)	8, 166, 406, 868
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	2 cut(s)	704, 935
BciVI	GTATCC	1 cut(s)	608
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	4 cut(s)	31, 160, 514, 935
BfmI	CTRYAG	2 cut(s)	644, 975
BfuI	GTATCC	1 cut(s)	608
BisI	GCNGC	8 cut(s)	85, 99, 340, 411, 570, 647, 866, 975
BlsI	GCNGC	8 cut(s)	86, 100, 341, 412, 571, 648, 867, 976
Bme1390I	CCNGG	2 cut(s)	704, 935
Bme18I	GGWCC	3 cut(s)	606, 727, 774
BmeT110I	CYCGRG	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	751
BmgT120I	GGNCC	3 cut(s)	606, 727, 774
BmiI	GGNNCC	6 cut(s)	313, 373, 437, 516, 589, 729
BmrFI	CCNGG	2 cut(s)	704, 935
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	978
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BpmI	CTGGAG	1 cut(s)	917
BpuEI	CTTGAG	1 cut(s)	829
BsaHI	GRCGYC	2 cut(s)	5, 393
BsaI	GGTCTC	2 cut(s)	514, 935
BsaJI	CCNNGG	2 cut(s)	132, 448
BsaWI	WCCGGW	5 cut(s)	205, 374, 505, 694, 880
BsaXI	ACNNNNNCTCC	2 cut(s)	896, 926
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 368, 505, 524, 709
Bse118I	RCCGGY	4 cut(s)	227, 308, 762, 952
Bse1I	ACTGG	2 cut(s)	729, 1014
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	704, 935
BseDI	CCNNGG	2 cut(s)	132, 448
BseGI	GGATG	4 cut(s)	36, 87, 444, 1042
BseLI	CCNNNNNNNGG	5 cut(s)	133, 368, 505, 524, 709
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	729, 1014
BseRI	GAGGAG	7 cut(s)	23, 32, 44, 55, 239, 320, 995
BseXI	GCAGC	5 cut(s)	96, 351, 658, 852, 961
BseYI	CCCAGC	1 cut(s)	1001
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	2 cut(s)	311, 371
BsiEI	CGRYCG	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	146
BslFI	GGGAC	3 cut(s)	148, 155, 814
BslI	CCNNNNNNNGG	5 cut(s)	133, 368, 505, 524, 709
BsmAI	GTCTC	4 cut(s)	31, 160, 514, 935
BsmBI	CGTCTC	2 cut(s)	31, 160
BsmFI	GGGAC	3 cut(s)	148, 155, 814
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	2 cut(s)	514, 935
BsoBI	CYCGRG	1 cut(s)	146
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	8 cut(s)	15, 318, 420, 441, 514, 555, 640, 735
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	172
BspEI	TCCGGA	1 cut(s)	205
BspLI	GGNNCC	6 cut(s)	313, 373, 437, 516, 589, 729
BspMAI	CTGCAG	2 cut(s)	648, 979
BspPI	GGATC	3 cut(s)	313, 509, 522
BspT107I	GGYRCC	2 cut(s)	311, 371
BspTNI	GGTCTC	2 cut(s)	514, 935
BsrBI	CCGCTC	1 cut(s)	71
BsrFI	RCCGGY	4 cut(s)	227, 308, 762, 952
BsrI	ACTGG	2 cut(s)	729, 1014
BssAI	RCCGGY	4 cut(s)	227, 308, 762, 952
BssECI	CCNNGG	2 cut(s)	132, 448
BssMI	GATC	8 cut(s)	15, 318, 420, 441, 514, 555, 640, 735
BssNI	GRCGYC	2 cut(s)	5, 393
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	704, 935
Bst4CI	ACNGT	4 cut(s)	545, 685, 805, 1046
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	2 cut(s)	5, 393
BstC8I	GCNNGC	6 cut(s)	225, 229, 233, 310, 764, 954
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	4 cut(s)	36, 87, 444, 1042
BstHHI	GCGC	2 cut(s)	202, 964
BstKTI	GATC	8 cut(s)	18, 321, 423, 444, 517, 558, 643, 738
BstMAI	GTCTC	4 cut(s)	31, 160, 514, 935
BstMBI	GATC	8 cut(s)	15, 318, 420, 441, 514, 555, 640, 735
BstMCI	CGRYCG	1 cut(s)	558
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	704, 935
BstNSI	RCATGY	1 cut(s)	901
BstSCI	CCNGG	2 cut(s)	702, 933
BstSFI	CTRYAG	2 cut(s)	644, 975
BstV1I	GCAGC	5 cut(s)	96, 351, 658, 852, 961
BstV2I	GAAGAC	1 cut(s)	978
BstX2I	RGATCY	2 cut(s)	318, 514
BstYI	RGATCY	2 cut(s)	318, 514
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	751
BtsCI	GGATG	4 cut(s)	36, 87, 444, 1042
BtsIMutI	CAGTG	3 cut(s)	799, 1021, 1051
Cac8I	GCNNGC	6 cut(s)	225, 229, 233, 310, 764, 954
CfoI	GCGC	2 cut(s)	202, 964
Cfr10I	RCCGGY	4 cut(s)	227, 308, 762, 952
Cfr13I	GGNCC	3 cut(s)	606, 727, 774
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	546, 886
CviAII	CATG	7 cut(s)	133, 482, 652, 820, 898, 926, 949
CviQI	GTAC	2 cut(s)	546, 886
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	8 cut(s)	17, 320, 422, 443, 516, 557, 642, 737
DpnII	GATC	8 cut(s)	15, 318, 420, 441, 514, 555, 640, 735
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	132
Eco31I	GGTCTC	2 cut(s)	514, 935
Eco47I	GGWCC	3 cut(s)	606, 727, 774
Eco88I	CYCGRG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	702, 933
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	2 cut(s)	31, 160
FaeI	CATG	7 cut(s)	136, 485, 655, 823, 901, 929, 952
FaiI	YATR	9 cut(s)	134, 194, 483, 653, 821, 891, 899, 927, 950
FaqI	GGGAC	3 cut(s)	148, 155, 814
FatI	CATG	7 cut(s)	132, 481, 651, 819, 897, 925, 948
FauI	CCCGC	5 cut(s)	89, 313, 496, 518, 817
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	8 cut(s)	85, 99, 340, 411, 570, 647, 866, 975
FokI	GGATG	4 cut(s)	23, 74, 431, 1049
Fsp4HI	GCNGC	8 cut(s)	85, 99, 340, 411, 570, 647, 866, 975
GlaI	GCGC	2 cut(s)	201, 963
GluI	GCNGC	8 cut(s)	85, 99, 340, 411, 570, 647, 866, 975
GsaI	CCCAGC	1 cut(s)	1005
GsuI	CTGGAG	1 cut(s)	917
HaeIII	GGCC	1 cut(s)	231
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	2 cut(s)	202, 964
Hin1I	GRCGYC	2 cut(s)	5, 393
Hin1II	CATG	7 cut(s)	136, 485, 655, 823, 901, 929, 952
Hin6I	GCGC	2 cut(s)	200, 962
HinP1I	GCGC	2 cut(s)	200, 962
HincII	GTYRAC	2 cut(s)	681, 700
HindII	GTYRAC	2 cut(s)	681, 700
HphI	GGTGA	5 cut(s)	10, 181, 346, 796, 823
Hpy166II	GTNNAC	4 cut(s)	681, 700, 831, 886
Hpy188I	TCNGA	7 cut(s)	115, 452, 514, 519, 672, 778, 839
Hpy188III	TCNNGA	7 cut(s)	146, 206, 322, 439, 638, 661, 846
Hpy8I	GTNNAC	4 cut(s)	681, 700, 831, 886
HpyAV	CCTTC	5 cut(s)	226, 372, 543, 578, 791
HpyCH4III	ACNGT	4 cut(s)	545, 685, 805, 1046
HpyCH4IV	ACGT	2 cut(s)	750, 858
HpyCH4V	TGCA	3 cut(s)	646, 893, 977
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	2 cut(s)	750, 858
Hsp92I	GRCGYC	2 cut(s)	5, 393
Hsp92II	CATG	7 cut(s)	136, 485, 655, 823, 901, 929, 952
HspAI	GCGC	2 cut(s)	200, 962
Kpn2I	TCCGGA	1 cut(s)	205
KroI	GCCGGC	4 cut(s)	227, 308, 762, 952
KroNI	GCCGGC	4 cut(s)	229, 310, 764, 954
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	8 cut(s)	15, 318, 420, 441, 514, 555, 640, 735
LmnI	GCTCC	4 cut(s)	306, 347, 490, 587
Lsp1109I	GCAGC	5 cut(s)	96, 351, 658, 852, 961
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	2 cut(s)	750, 858
MaeIII	GTNAC	2 cut(s)	352, 400
MalI	GATC	8 cut(s)	17, 320, 422, 443, 516, 557, 642, 737
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	8 cut(s)	15, 318, 420, 441, 514, 555, 640, 735
MboII	GAAGA	6 cut(s)	37, 357, 457, 978, 980, 1007
MflI	RGATCY	2 cut(s)	318, 514
MluCI	AATT	5 cut(s)	254, 378, 501, 787, 1049
MlyI	GAGTC	6 cut(s)	203, 319, 462, 905, 949, 992
MmeI	TCCRAC	2 cut(s)	633, 836
MroI	TCCGGA	1 cut(s)	205
MroNI	GCCGGC	4 cut(s)	227, 308, 762, 952
MspR9I	CCNGG	2 cut(s)	704, 935
MvaI	CCWGG	2 cut(s)	704, 935
MwoI	GCNNNNNNNGC	1 cut(s)	272
NaeI	GCCGGC	4 cut(s)	229, 310, 764, 954
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	8 cut(s)	15, 318, 420, 441, 514, 555, 640, 735
NgoMIV	GCCGGC	4 cut(s)	227, 308, 762, 952
NlaIII	CATG	7 cut(s)	136, 485, 655, 823, 901, 929, 952
NlaIV	GGNNCC	6 cut(s)	313, 373, 437, 516, 589, 729
NmuCI	GTSAC	2 cut(s)	352, 400
NspI	RCATGY	1 cut(s)	901
PaeR7I	CTCGAG	1 cut(s)	146
PciI	ACATGT	1 cut(s)	897
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PdiI	GCCGGC	4 cut(s)	229, 310, 764, 954
PfeI	GAWTC	4 cut(s)	116, 715, 840, 1022
PflMI	CCANNNNNTGG	1 cut(s)	709
PfoI	TCCNGGA	1 cut(s)	933
PkrI	GCNGC	8 cut(s)	86, 100, 341, 412, 571, 648, 867, 976
Ple19I	CGATCG	1 cut(s)	558
PleI	GAGTC	6 cut(s)	203, 319, 461, 905, 948, 991
PpsI	GAGTC	6 cut(s)	203, 319, 461, 905, 948, 991
PscI	ACATGT	1 cut(s)	897
Psp6I	CCWGG	2 cut(s)	702, 933
PspFI	CCCAGC	1 cut(s)	1001
PspGI	CCWGG	2 cut(s)	702, 933
PspN4I	GGNNCC	6 cut(s)	313, 373, 437, 516, 589, 729
PspPI	GGNCC	3 cut(s)	606, 727, 774
PstI	CTGCAG	2 cut(s)	648, 979
PsuI	RGATCY	2 cut(s)	318, 514
PvuI	CGATCG	1 cut(s)	558
RsaI	GTAC	2 cut(s)	547, 887
RsaNI	GTAC	2 cut(s)	546, 886
SatI	GCNGC	8 cut(s)	85, 99, 340, 411, 570, 647, 866, 975
Sau3AI	GATC	8 cut(s)	15, 318, 420, 441, 514, 555, 640, 735
Sau96I	GGNCC	3 cut(s)	606, 727, 774
SchI	GAGTC	6 cut(s)	203, 319, 462, 905, 949, 992
ScrFI	CCNGG	2 cut(s)	704, 935
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	2 cut(s)	644, 975
Sfr274I	CTCGAG	1 cut(s)	146
SinI	GGWCC	3 cut(s)	606, 727, 774
SlaI	CTCGAG	1 cut(s)	146
SmlI	CTYRAG	2 cut(s)	146, 844
SmoI	CTYRAG	2 cut(s)	146, 844
Sse9I	AATT	5 cut(s)	254, 378, 501, 787, 1049
StyD4I	CCNGG	2 cut(s)	702, 933
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	4 cut(s)	545, 685, 805, 1046
TaiI	ACGT	2 cut(s)	753, 861
TaqI	TCGA	6 cut(s)	14, 147, 456, 468, 539, 734
TasI	AATT	5 cut(s)	254, 378, 501, 787, 1049
TatI	WGTACW	1 cut(s)	885
TauI	GCSGC	3 cut(s)	101, 413, 572
TfiI	GAWTC	4 cut(s)	116, 715, 840, 1022
TscAI	CASTG	3 cut(s)	799, 1021, 1051
TseFI	GTSAC	2 cut(s)	352, 400
TseI	GCWGC	5 cut(s)	84, 339, 646, 865, 974
Tsp45I	GTSAC	2 cut(s)	352, 400
TspDTI	ATGAA	1 cut(s)	914
TspGWI	ACGGA	2 cut(s)	627, 904
TspRI	CASTG	3 cut(s)	799, 1021, 1051
Van91I	CCANNNNNTGG	1 cut(s)	709
VpaK11BI	GGWCC	3 cut(s)	606, 727, 774
XapI	RAATTY	4 cut(s)	378, 501, 787, 1049
XceI	RCATGY	1 cut(s)	901
XhoI	CTCGAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.