Rorug05G0082500

Multiple C2 and transmembrane domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014894
Physical Location & Seq
Forward (+)
7134148 .. 7139047
4900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0082500.1

Sequence Viewer

Length: 3084 bp
ATGGAGAGCACTTGGTTCTTCCTGGTCTACTGTTGTTGTACGGCGGCTAGCTGCTTAACTATGGCAGCAGCACAAACCAACATCAATACTGACCAATATGCTCTTCTTGCTCTCAAAGCCCATATCACCAATGACCCTCATAACTTAATCTCCACTAACTGGTCAACCACTACTCCCATTTGCAACTGGGTTGGTGTTACCTGTGGTGTGCGCCACCTTAGAGCCACAGCCTTGAACCTCTCCTACTTTGGTCTCCAAGGCACTATTCCTCCACAGCCAGGCAACCTATCGTTTCTTCTTGATATTGATTTGAGAAATAACAGTTTCCATGGCCATTTGCCTGAGGAAATGGCTCGTCTACGCAGGTTGAAGTTCATTAACTTTGGAAATAACAAATTTATGGGAGCCATTCCATCATGGTTCGGGTCTTTATCCAAACTTCAAATTTTCACTTTGACAGGTAATCAGTTTTCAGGTTCGATTCCCAATGATATCTTCAACTTATCTGGGCTACAACTAATGGATTTCAGGTCAAATCATTTATCAGGTAGTATACCGAGAGAAGTTGGAAACTTAACAACATTGAAAGAGATCTACCTTGATAATAATAATTTCATAGAAATTCCAAATGAAATCGGCGCTTTAGGTCAACTAGAAGAATTGTTTGTGCAAAACAATGCCCTCGAAGGAAATGTTCCTATGCTAGTCTTCAACATGTCTTCTTTGATTACTTTGACTCTAAAAGGAAACTATTTGAAGGGTAGACTTCCAGACAATGTGTGCCAGAATCTTCTTCGTGTTCAACACTTGAATTTCGCTCAGAATGAGCTTGAAGGTCCACTTCCATCCAAATTTTGGCAATGCAACCAACTTGTTAATATAGTTTTGGCGTGTAACAACTTCAATGAAAGCATACCCAAAAGTATTGGGAACGCAACCCAATTGAAACAGATTGAGCTTAGCGAAAACAATTTGACAGGTACTATACCATATGAGATTGGTCATCTTCCAAACTTAGAGATATTGGACCTCGGTGGTAATAATCTGAATGGTCTCATCCCAACCACAATCTTCAACAAGTCCACAACAATGTTAATACAACTAGATAATAATCAGCTCTCAGGCAGCCTTCCAACAAATATAGGTCTTGGGCTTCCAAACCTACAAGAGTTCGCCATAGGAGAAAATAAACTAAGTGGAGAAATCCCCAAATTCATCTCCATCACTTCAGGAGACAATCAATTGACTGGAGCAATTCCAACCTCATTAGGAACTCTGCAAAATCTCCAAGGTTTGGATTTGGGATCTAACAAATTGCAAGGGCACATCCCGGATGAACTTTGTCAACTACAAAACCTAGGAATCTTAGGGTTGGGTGTTAACCAACTCTCTGGCTCTATACCTTCTTGCTTGGGTAATCTAGTCATCCCACTAAGACTTCTATCATTAGAGTCCAATATGTTGAATTCCACAATACCATCTACCTTGTGGGGACTTTCAGATATCTTATATGTAGATTTATCATCCAATAATCTAAGTGGATCTCTCTCAGAAGATGTTGGTAACCTAAAAGTTGTCATAAAGATAGATTTATCAAACAACTACTTATCCGGTAGTATACCAAGCAGCATTGGGGATCTAAAAAGCGAGAGATTATTCAGAGCACCGCCGTGCACTTGCACCAACATAAATGAATGCTTGGTCAATCTCTCCTTGGCGAATAATAAGTTCAGAGGCCTTATCCCTAGTTCACTTGGCAAGTCCCTCAGCTTGGAACTTTTAGATTTATCTAAAAACAATCTGTTTGGAATAATTCCAAAATCACTCGAATCCCTAAAATACCTCAAAATTTTGAATTTGTCTTTCAACAAACTCGAAGGAGAAATCCCAACCCGTGGGCCTTTCCGAAACTTATCTGCTGAATCATTTGTGTCGAGTGGGAAACTCTGTGGTGCACCCCGATTCCGTGTCCCACCATGCAATAATAGTACATTTGATGCACATTCAACTAAAGCAAGCACATCCATCTTGAAGTACATTATACCAGCGATCTTGTCAGTACTGTTCATGGTTACCTCCATTTGGATAGTGATACTACGTAGAAGAAAGAATGTGGAAGCTGCAAAAGAGACAACATTGTTACCTCAACTTCTATGGAGAAGAGTTTCACACCTGGAACTTGTTAGAGCAACAAATGCATTTGATGAAAGCAACTTACTTGGCAATGGTGGTTTTGGCTCAGTATATAAAGGAACATTTTCTGATGGGATAAATGTGGCCATAAAGGTTTTCAATTTACAGCTAGAAGGGGCATTCAAGAGTTTCGATATTGAGTGTGAAATGCTAGGCAACATTCGTCATCGAAATCTTATCAAAATCATCAGTTGCTGCAGTCAAATTGATTTCAAAGCCGTGGTACTGAACTACATGCCTAATGGGAGCCTTGCAAAGTGGTTGTATTCTCTAAACTTTTGTCTGAATATTCTACAAAGACTGAGTATTATGATAGATGTTGCATCGGCATTGGAATACCTTCATCATGGCTATGAAACACCTATTGTTCACTGTGATTTGAAGCCCAGCAATATTCTATTGGATGAGGATATGAGTGCACATGTAGCAGACTTTGGCATTGCGAAACTTTTGTGTGGAAGAGATTCGATGACCCAAACCATCACTCAAGCCACAATTGGATACATGGCTCCAGAGTATGGAATGGAAGGAATAGTTACTAGAAGAGGGGATGTGTACAGTTTTGGTATCGTATTGATGGAAACATTCACAGGAAAGAAGCCGACGGATGAGATGTTTGTTGGGGAAATGAGTTTGAGGCAATGGGTTGCAAATTCACCATTACTTGATGTTATGGATGCCAAGTTACTCGGGCTAGAAGCAGAGGATCATGATTTTGTCAGCAAGAGGGAGTGTTTGTCATCCATTATGAGATTAGCTCTATCTTGTTCCGCAGAATCATCGGAGGAGAGGATTAATATGCAGGAGGCTCTAGCCACGTTGAACAAGATCAAGATCAAGTTTTTGAAGGACGCTGCCAGAGGTGTGGTGTTGAACCATTCTCTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 PRT_C

Protein Analysis

1027

Amino Acids

112.95

Weight (kDa)

6.11

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 68 1.8e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 78 - 175 7.5e-06 Leucine-rich repeat region
LRR_14 PF23598 142 - 221 7.2e-07 Leucine-rich repeat region
LRR_14 PF23598 181 - 272 3.3e-07 Leucine-rich repeat region
LRR_8 PF13855 290 - 349 2.7e-08 Leucine rich repeat
LRR_8 PF13855 567 - 625 7.9e-06 Leucine rich repeat
Pkinase PF00069 736 - 1003 4.9e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 738 - 1003 9.3e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20080
fragaria_vesca FvH4_3g14700
malus_domestica MD09G1226100.v1.1 MD11G1015900.v1.1
prunus_persica Prupe.4G132300_v2.0.a1 Prupe.6G014000_v2.0.a1
pyrus_communis pycom11g01110
rosa_chinensis RchiOBHm_Chr5g0024191
rosa_laevigata RLG00000032778
rosa_multiflora Rmu_sc0004033.1_g000007
rosa_rugosa Rorug05G0082500
rosa_samantha Rh5AG173000 Rh5BG169700 Rh5CG185500 Rh5DG172000
rosa_wichuraiana Rw5G015610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 354
AccB7I CCANNNNNTGG 5 cut(s) 159, 855, 1294, 1895, 2711
AccI GTMKAC 5 cut(s) 27, 358, 553, 763, 1618
AciI CCGC 3 cut(s) 44, 1667, 2964
AclWI GGATC 4 cut(s) 1312, 1549, 1644, 2907
AcoI YGGCCR 2 cut(s) 331, 2277
AcuI CTGAAG 1 cut(s) 1212
AfaI GTAC 7 cut(s) 40, 982, 1990, 2036, 2061, 2418, 2750
AfiI CCNNNNNNNGG 8 cut(s) 159, 278, 855, 1294, 1771, 1895, 2082, 2711
AflIII ACRYGT 2 cut(s) 714, 2614
AjnI CCWGG 3 cut(s) 21, 277, 2172
AjuI GAANNNNNNNTTGG 6 cut(s) 87, 119, 249, 281, 479, 511
AleI CACNNNNGTG 1 cut(s) 1669
AluBI AGCT 8 cut(s) 51, 829, 958, 1117, 1770, 2120, 2302, 2951
AluI AGCT 8 cut(s) 51, 829, 958, 1117, 1770, 2120, 2302, 2951
Alw21I GWGCWC 5 cut(s) 11, 1666, 1676, 1957, 2614
Alw26I GTCTC 4 cut(s) 257, 1058, 1227, 2123
Alw44I GTGCAC 3 cut(s) 1672, 1953, 2610
AlwI GGATC 4 cut(s) 1312, 1549, 1644, 2907
AlwNI CAGNNNCTG 1 cut(s) 2388
Ama87I CYCGRG 1 cut(s) 2882
AoxI GGCC 4 cut(s) 331, 1735, 1898, 2277
ApaLI GTGCAC 3 cut(s) 1672, 1953, 2610
ApeKI GCWGC 8 cut(s) 51, 65, 68, 1125, 1626, 2120, 2388, 3047
AseI ATTAAT 1 cut(s) 2988
Asp700I GAANNNNTTC 4 cut(s) 2164, 2257, 2532, 2656
AspA2I CCTAGG 1 cut(s) 1357
AspLEI GCGC 2 cut(s) 213, 641
AspS9I GGNCC 3 cut(s) 836, 1027, 1898
AsuC2I CCSGG 1 cut(s) 1331
AsuHPI GGTGA 2 cut(s) 118, 2841
AsuNHI GCTAGC 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 2882
AvaII GGWCC 2 cut(s) 836, 1027
AvrII CCTAGG 1 cut(s) 1357
AxyI CCTNAGG 1 cut(s) 342
BaeGI GKGCMC 4 cut(s) 1326, 1676, 1957, 2614
BalI TGGCCA 2 cut(s) 333, 2279
BbsI GAAGAC 2 cut(s) 700, 711
Bbv12I GWGCWC 5 cut(s) 11, 1666, 1676, 1957, 2614
BbvCI CCTCAGC 1 cut(s) 1766
BbvI GCAGC 8 cut(s) 38, 77, 80, 1137, 1638, 2107, 2375, 3034
BccI CCATC 8 cut(s) 421, 853, 1229, 1486, 2033, 2258, 2681, 2764
BceAI ACGGC 3 cut(s) 57, 1654, 2396
BcgI CGANNNNNNTGC 2 cut(s) 2955, 2989
BciT130I CCWGG 3 cut(s) 23, 279, 2174
BciVI GTATCC 1 cut(s) 2687
BcnI CCSGG 1 cut(s) 1331
BcoDI GTCTC 4 cut(s) 257, 1058, 1227, 2123
BfmI CTRYAG 1 cut(s) 2389
BfoI RGCGCY 1 cut(s) 642
BfuAI ACCTGC 1 cut(s) 354
BfuI GTATCC 1 cut(s) 2687
BglII AGATCT 1 cut(s) 591
BisI GCNGC 9 cut(s) 45, 52, 66, 69, 1126, 1627, 2121, 2389, 3048
BlnI CCTAGG 1 cut(s) 1357
BlpI GCTNAGC 1 cut(s) 959
BlsI GCNGC 9 cut(s) 46, 53, 67, 70, 1127, 1628, 2122, 2390, 3049
BmcAI AGTACT 1 cut(s) 2061
Bme1390I CCNGG 4 cut(s) 23, 279, 1331, 2174
Bme18I GGWCC 2 cut(s) 836, 1027
BmeT110I CYCGRG 1 cut(s) 2882
BmgT120I GGNCC 3 cut(s) 836, 1027, 1898
BmiI GGNNCC 3 cut(s) 406, 2441, 2703
BmrFI CCNGG 4 cut(s) 23, 279, 1331, 2174
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 3 cut(s) 1987, 2525, 2860
BmtI GCTAGC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 2 cut(s) 700, 711
BplI GAGNNNNNCTC 2 cut(s) 2935, 2967
BpmI CTGGAG 2 cut(s) 1269, 2688
Bpu10I CCTNAGC 1 cut(s) 1766
Bpu1102I GCTNAGC 1 cut(s) 959
BpuEI CTTGAG 1 cut(s) 2664
BpuMI CCSGG 1 cut(s) 1331
BsaAI YACGTR 1 cut(s) 2099
BsaBI GATNNNNATC 2 cut(s) 1110, 3026
BsaI GGTCTC 2 cut(s) 257, 1058
BsaJI CCNNGG 8 cut(s) 256, 328, 1030, 1288, 1357, 1713, 1894, 2412
BsaWI WCCGGW 1 cut(s) 1610
BsaXI ACNNNNNCTCC 8 cut(s) 134, 157, 164, 187, 253, 283, 2915, 2945
Bsc4I CCNNNNNNNGG 8 cut(s) 159, 278, 855, 1294, 1771, 1895, 2082, 2711
Bse1I ACTGG 3 cut(s) 164, 191, 1252
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 4 cut(s) 866, 2230, 2631, 2840
Bse8I GATNNNNATC 2 cut(s) 1110, 3026
BseBI CCWGG 3 cut(s) 23, 279, 2174
BseDI CCNNGG 8 cut(s) 256, 328, 1030, 1288, 1357, 1713, 1894, 2412
BseJI GATNNNNATC 2 cut(s) 1110, 3026
BseLI CCNNNNNNNGG 8 cut(s) 159, 278, 855, 1294, 1771, 1895, 2082, 2711
BseMI GCAATG 4 cut(s) 866, 2230, 2631, 2840
BseMII CTCAG 7 cut(s) 333, 833, 1134, 1563, 1780, 2253, 2486
BseNI ACTGG 3 cut(s) 164, 191, 1252
BseRI GAGGAG 1 cut(s) 2993
BseSI GKGCMC 4 cut(s) 1326, 1676, 1957, 2614
BseXI GCAGC 8 cut(s) 38, 77, 80, 1137, 1638, 2107, 2375, 3034
BseYI CCCAGC 1 cut(s) 2579
BshFI GGCC 4 cut(s) 333, 1737, 1900, 2279
BsiHKAI GWGCWC 5 cut(s) 11, 1666, 1676, 1957, 2614
BsiHKCI CYCGRG 1 cut(s) 2882
BsiSI CCGG 2 cut(s) 1331, 1611
BslFI GGGAC 3 cut(s) 1506, 1747, 1955
BslI CCNNNNNNNGG 8 cut(s) 159, 278, 855, 1294, 1771, 1895, 2082, 2711
BsmAI GTCTC 4 cut(s) 257, 1058, 1227, 2123
BsmFI GGGAC 3 cut(s) 1506, 1747, 1955
BsmI GAATGC 2 cut(s) 1700, 2312
BsnI GGCC 4 cut(s) 333, 1737, 1900, 2279
Bso31I GGTCTC 2 cut(s) 257, 1058
BsoBI CYCGRG 1 cut(s) 2882
Bsp1286I GDGCHC 6 cut(s) 11, 1326, 1666, 1676, 1957, 2614
Bsp1407I TGTACA 1 cut(s) 2748
Bsp143I GATC 8 cut(s) 591, 1304, 1541, 1636, 2049, 2899, 3021, 3027
Bsp1720I GCTNAGC 1 cut(s) 959
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 3 cut(s) 44, 1667, 2964
BspANI GGCC 4 cut(s) 333, 1737, 1900, 2279
BspCNI CTCAG 7 cut(s) 334, 832, 1133, 1562, 1779, 2252, 2487
BspHI TCATGA 1 cut(s) 2902
BspLI GGNNCC 3 cut(s) 406, 2441, 2703
BspMAI CTGCAG 1 cut(s) 2393
BspMI ACCTGC 1 cut(s) 354
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 4 cut(s) 1312, 1549, 1644, 2907
BspQI GCTCTTC 1 cut(s) 108
BspTNI GGTCTC 2 cut(s) 257, 1058
BsrDI GCAATG 4 cut(s) 866, 2230, 2631, 2840
BsrGI TGTACA 1 cut(s) 2748
BsrI ACTGG 3 cut(s) 164, 191, 1252
BssECI CCNNGG 8 cut(s) 256, 328, 1030, 1288, 1357, 1713, 1894, 2412
BssMI GATC 8 cut(s) 591, 1304, 1541, 1636, 2049, 2899, 3021, 3027
BssNAI GTATAC 2 cut(s) 554, 1619
BssT1I CCWWGG 5 cut(s) 256, 328, 1288, 1357, 1713
Bst1107I GTATAC 2 cut(s) 554, 1619
Bst2UI CCWGG 3 cut(s) 23, 279, 2174
Bst4CI ACNGT 5 cut(s) 32, 323, 2064, 2567, 2753
Bst6I CTCTTC 4 cut(s) 108, 2155, 2647, 2731
BstAPI GCANNNNNTGC 1 cut(s) 2195
BstAUI TGTACA 1 cut(s) 2748
BstBAI YACGTR 1 cut(s) 2099
BstC8I GCNNGC 2 cut(s) 49, 2017
BstDSI CCRYGG 3 cut(s) 328, 1894, 2412
BstEII GGTNACC 2 cut(s) 1562, 2071
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 2 cut(s) 213, 641
BstKTI GATC 8 cut(s) 594, 1307, 1544, 1639, 2052, 2902, 3024, 3030
BstMAI GTCTC 4 cut(s) 257, 1058, 1227, 2123
BstMBI GATC 8 cut(s) 591, 1304, 1541, 1636, 2049, 2899, 3021, 3027
BstMWI GCNNNNNNNGC 4 cut(s) 107, 116, 2195, 2618
BstNI CCWGG 3 cut(s) 23, 279, 2174
BstNSI RCATGY 3 cut(s) 718, 2431, 2618
BstPI GGTNACC 2 cut(s) 1562, 2071
BstSCI CCNGG 4 cut(s) 21, 277, 1329, 2172
BstSFI CTRYAG 1 cut(s) 2389
BstSLI GKGCMC 4 cut(s) 1326, 1676, 1957, 2614
BstSNI TACGTA 1 cut(s) 2099
BstV1I GCAGC 8 cut(s) 38, 77, 80, 1137, 1638, 2107, 2375, 3034
BstV2I GAAGAC 2 cut(s) 700, 711
BstX2I RGATCY 4 cut(s) 591, 1304, 1541, 1636
BstXI CCANNNNNNTGG 2 cut(s) 1391, 3058
BstYI RGATCY 4 cut(s) 591, 1304, 1541, 1636
BstZ17I GTATAC 2 cut(s) 554, 1619
Bsu36I CCTNAGG 1 cut(s) 342
BsuI GTATCC 1 cut(s) 2687
BsuRI GGCC 4 cut(s) 333, 1737, 1900, 2279
BtgI CCRYGG 3 cut(s) 328, 1894, 2412
BtsIMutI CAGTG 1 cut(s) 2563
BveI ACCTGC 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 49, 2017
CaiI CAGNNNCTG 1 cut(s) 2388
CciI TCATGA 1 cut(s) 2902
CfoI GCGC 2 cut(s) 213, 641
Cfr13I GGNCC 3 cut(s) 836, 1027, 1898
CseI GACGC 1 cut(s) 3053
Csp6I GTAC 7 cut(s) 39, 981, 1989, 2035, 2060, 2417, 2749
CviQI GTAC 7 cut(s) 39, 981, 1989, 2035, 2060, 2417, 2749
DpnI GATC 8 cut(s) 593, 1306, 1543, 1638, 2051, 2901, 3023, 3029
DpnII GATC 8 cut(s) 591, 1304, 1541, 1636, 2049, 2899, 3021, 3027
EaeI YGGCCR 2 cut(s) 331, 2277
Eam1104I CTCTTC 4 cut(s) 108, 2155, 2647, 2731
EarI CTCTTC 4 cut(s) 108, 2155, 2647, 2731
Eco105I TACGTA 1 cut(s) 2099
Eco130I CCWWGG 5 cut(s) 256, 328, 1288, 1357, 1713
Eco147I AGGCCT 1 cut(s) 1737
Eco31I GGTCTC 2 cut(s) 257, 1058
Eco32I GATATC 2 cut(s) 493, 1504
Eco47I GGWCC 2 cut(s) 836, 1027
Eco57I CTGAAG 1 cut(s) 1212
Eco81I CCTNAGG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 2882
Eco91I GGTNACC 2 cut(s) 1562, 2071
EcoO65I GGTNACC 2 cut(s) 1562, 2071
EcoRI GAATTC 1 cut(s) 1465
EcoRII CCWGG 3 cut(s) 21, 277, 2172
EcoRV GATATC 2 cut(s) 493, 1504
EcoT14I CCWWGG 5 cut(s) 256, 328, 1288, 1357, 1713
EcoT22I ATGCAT 1 cut(s) 2200
ErhI CCWWGG 5 cut(s) 256, 328, 1288, 1357, 1713
FalI AAGNNNNNCTT 2 cut(s) 825, 857
FaqI GGGAC 3 cut(s) 1506, 1747, 1955
FauNDI CATATG 1 cut(s) 991
FblI GTMKAC 5 cut(s) 27, 358, 553, 763, 1618
Fnu4HI GCNGC 9 cut(s) 45, 52, 66, 69, 1126, 1627, 2121, 2389, 3048
Fsp4HI GCNGC 9 cut(s) 45, 52, 66, 69, 1126, 1627, 2121, 2389, 3048
GlaI GCGC 2 cut(s) 212, 640
GluI GCNGC 9 cut(s) 45, 52, 66, 69, 1126, 1627, 2121, 2389, 3048
GsaI CCCAGC 1 cut(s) 2583
GsuI CTGGAG 2 cut(s) 1269, 2688
HaeII RGCGCY 1 cut(s) 642
HaeIII GGCC 4 cut(s) 333, 1737, 1900, 2279
HapII CCGG 2 cut(s) 1331, 1611
HgaI GACGC 1 cut(s) 3053
HhaI GCGC 2 cut(s) 213, 641
Hin6I GCGC 2 cut(s) 211, 639
HinP1I GCGC 2 cut(s) 211, 639
HincII GTYRAC 4 cut(s) 165, 650, 1346, 1381
HindII GTYRAC 4 cut(s) 165, 650, 1346, 1381
HpaI GTTAAC 1 cut(s) 1381
HpaII CCGG 2 cut(s) 1331, 1611
HphI GGTGA 2 cut(s) 118, 2841
Hpy188III TCNNGA 8 cut(s) 299, 770, 1230, 2029, 2317, 2705, 2903, 3025
Hpy99I CGWCG 1 cut(s) 2800
HpyCH4III ACNGT 5 cut(s) 32, 323, 2064, 2567, 2753
HpyCH4IV ACGT 2 cut(s) 2098, 3011
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 116, 2195, 2618
HpySE526I ACGT 2 cut(s) 2098, 3011
HspAI GCGC 2 cut(s) 211, 639
KspAI GTTAAC 1 cut(s) 1381
Kzo9I GATC 8 cut(s) 591, 1304, 1541, 1636, 2049, 2899, 3021, 3027
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 4 cut(s) 404, 1250, 2439, 2707
Lsp1109I GCAGC 8 cut(s) 38, 77, 80, 1137, 1638, 2107, 2375, 3034
LweI GCATC 3 cut(s) 1987, 2525, 2860
MaeII ACGT 2 cut(s) 2098, 3011
MaeIII GTNAC 7 cut(s) 196, 893, 1562, 2071, 2139, 2728, 2877
MalI GATC 8 cut(s) 593, 1306, 1543, 1638, 2051, 2901, 3023, 3029
MboI GATC 8 cut(s) 591, 1304, 1541, 1636, 2049, 2899, 3021, 3027
MfeI CAATTG 3 cut(s) 941, 1241, 2688
MflI RGATCY 4 cut(s) 591, 1304, 1541, 1636
MhlI GDGCHC 6 cut(s) 11, 1326, 1666, 1676, 1957, 2614
MlsI TGGCCA 2 cut(s) 333, 2279
MluNI TGGCCA 2 cut(s) 333, 2279
MlyI GAGTC 2 cut(s) 730, 1460
MmeI TCCRAC 3 cut(s) 547, 1157, 1283
Mox20I TGGCCA 2 cut(s) 333, 2279
Mph1103I ATGCAT 1 cut(s) 2200
MroXI GAANNNNTTC 4 cut(s) 2164, 2257, 2532, 2656
MscI TGGCCA 2 cut(s) 333, 2279
MseI TTAA 8 cut(s) 56, 146, 378, 575, 876, 1094, 1380, 2988
MslI CAYNNNNRTG 3 cut(s) 1088, 1669, 2544
Msp20I TGGCCA 2 cut(s) 333, 2279
MspI CCGG 2 cut(s) 1331, 1611
MspR9I CCNGG 4 cut(s) 23, 279, 1331, 2174
MunI CAATTG 3 cut(s) 941, 1241, 2688
Mva1269I GAATGC 2 cut(s) 1700, 2312
MvaI CCWGG 3 cut(s) 23, 279, 2174
MwoI GCNNNNNNNGC 4 cut(s) 107, 116, 2195, 2618
NciI CCSGG 1 cut(s) 1331
NcoI CCATGG 1 cut(s) 328
NdeI CATATG 1 cut(s) 991
NdeII GATC 8 cut(s) 591, 1304, 1541, 1636, 2049, 2899, 3021, 3027
NheI GCTAGC 1 cut(s) 47
NlaIV GGNNCC 3 cut(s) 406, 2441, 2703
NsiI ATGCAT 1 cut(s) 2200
NspI RCATGY 3 cut(s) 718, 2431, 2618
OliI CACNNNNGTG 1 cut(s) 1669
PagI TCATGA 1 cut(s) 2902
PceI AGGCCT 1 cut(s) 1737
PciI ACATGT 2 cut(s) 714, 2614
PciSI GCTCTTC 1 cut(s) 108
PctI GAATGC 2 cut(s) 1700, 2312
PdmI GAANNNNTTC 4 cut(s) 2164, 2257, 2532, 2656
PfeI GAWTC 8 cut(s) 481, 787, 1362, 1829, 1922, 1962, 2657, 2969
PflMI CCANNNNNTGG 5 cut(s) 159, 855, 1294, 1895, 2711
PfoI TCCNGGA 1 cut(s) 1329
PkrI GCNGC 9 cut(s) 46, 53, 67, 70, 1127, 1628, 2122, 2390, 3049
PleI GAGTC 2 cut(s) 730, 1459
PpsI GAGTC 2 cut(s) 730, 1459
Ppu21I YACGTR 1 cut(s) 2099
PscI ACATGT 2 cut(s) 714, 2614
PshBI ATTAAT 1 cut(s) 2988
Psp6I CCWGG 3 cut(s) 21, 277, 2172
PspEI GGTNACC 2 cut(s) 1562, 2071
PspFI CCCAGC 1 cut(s) 2579
PspGI CCWGG 3 cut(s) 21, 277, 2172
PspN4I GGNNCC 3 cut(s) 406, 2441, 2703
PspPI GGNCC 3 cut(s) 836, 1027, 1898
PsrI GAACNNNNNNTAC 2 cut(s) 227, 259
PstI CTGCAG 1 cut(s) 2393
PstNI CAGNNNCTG 1 cut(s) 2388
PsuI RGATCY 4 cut(s) 591, 1304, 1541, 1636
RsaI GTAC 7 cut(s) 40, 982, 1990, 2036, 2061, 2418, 2750
RsaNI GTAC 7 cut(s) 39, 981, 1989, 2035, 2060, 2417, 2749
RseI CAYNNNNRTG 3 cut(s) 1088, 1669, 2544
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 8 cut(s) 56, 146, 378, 575, 876, 1094, 1380, 2988
SatI GCNGC 9 cut(s) 45, 52, 66, 69, 1126, 1627, 2121, 2389, 3048
Sau3AI GATC 8 cut(s) 591, 1304, 1541, 1636, 2049, 2899, 3021, 3027
Sau96I GGNCC 3 cut(s) 836, 1027, 1898
ScaI AGTACT 1 cut(s) 2061
SchI GAGTC 2 cut(s) 730, 1460
ScrFI CCNGG 4 cut(s) 23, 279, 1331, 2174
SduI GDGCHC 6 cut(s) 11, 1326, 1666, 1676, 1957, 2614
SfaNI GCATC 3 cut(s) 1987, 2525, 2860
SfcI CTRYAG 1 cut(s) 2389
SinI GGWCC 2 cut(s) 836, 1027
SmiMI CAYNNNNRTG 3 cut(s) 1088, 1669, 2544
SmlI CTYRAG 1 cut(s) 2679
SmoI CTYRAG 1 cut(s) 2679
SnaBI TACGTA 1 cut(s) 2099
SseBI AGGCCT 1 cut(s) 1737
SsiI CCGC 3 cut(s) 44, 1667, 2964
SspI AATATT 2 cut(s) 2482, 2587
StuI AGGCCT 1 cut(s) 1737
StyD4I CCNGG 4 cut(s) 21, 277, 1329, 2172
StyI CCWWGG 5 cut(s) 256, 328, 1288, 1357, 1713
TaaI ACNGT 5 cut(s) 32, 323, 2064, 2567, 2753
TaiI ACGT 2 cut(s) 2101, 3014
TaqI TCGA 8 cut(s) 479, 684, 1827, 1875, 1934, 2325, 2362, 2660
TatI WGTACW 4 cut(s) 1988, 2034, 2059, 2748
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 8 cut(s) 481, 787, 1362, 1829, 1922, 1962, 2657, 2969
Tru1I TTAA 8 cut(s) 56, 146, 378, 575, 876, 1094, 1380, 2988
Tru9I TTAA 8 cut(s) 56, 146, 378, 575, 876, 1094, 1380, 2988
TscAI CASTG 1 cut(s) 2570
TseI GCWGC 8 cut(s) 51, 65, 68, 1125, 1626, 2120, 2388, 3047
TspGWI ACGGA 2 cut(s) 1955, 2813
TspRI CASTG 1 cut(s) 2570
Van91I CCANNNNNTGG 5 cut(s) 159, 855, 1294, 1895, 2711
VneI GTGCAC 3 cut(s) 1672, 1953, 2610
VpaK11BI GGWCC 2 cut(s) 836, 1027
VspI ATTAAT 1 cut(s) 2988
XceI RCATGY 3 cut(s) 718, 2431, 2618
XcmI CCANNNNNNNNNTGG 2 cut(s) 852, 1485
XmaJI CCTAGG 1 cut(s) 1357
XmiI GTMKAC 5 cut(s) 27, 358, 553, 763, 1618
XmnI GAANNNNTTC 4 cut(s) 2164, 2257, 2532, 2656
ZrmI AGTACT 1 cut(s) 2061
Zsp2I ATGCAT 1 cut(s) 2200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.