Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016596

Physical Location & Seq

Genomic Coordinates Forward (+)

8676343 .. 8677747

Gene Structure 1405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0097900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGGAAGGCTCAAGATCTGGAACTCCACATCATAGATAAAGCTGCACCTATTTGTAATCCAAATATGTCTCTCATACCAGTTCAAGAAGCTGAACCAGCAATTTCTCGGCCCAGAAATTTTAAGTGGTGGCTCCGTATCGGCGTCTACACACTCTTTGTTCTCTTTGGCCAGTCAGCAGCTATACTCTTGGGACGACTGTACTACAACAAAGGTGGAAAAAGCATATGGATGGCAACCCTAGTGCAATTTGTAGGGTTTCCAATCCTAATTCCTTACCAATGTCTCTCATCATCCAAAAAAATCACTACAGAAAGCAATGTGAACCTTCCATCTTCATCAGTTCTTGCATTGATCTATCTCTCTTTTGGTGTGCTACTAGCATCAGATAGCATGCTGTATTCCATTGGACTCTTGTACCTTCCAGTTTCGACATTTTCACTCATTTGTGCATCTCAGTTGGTCTTCAATGCTTTCTTCTCCTTCTTCCTCAATTCACAAAAGTTCACACCTTACATTGTCAATTCCCTAGTCCTTCTCACCATCTCCTCCATGTTACTTGTGTTTCATGCCAACTCCATGAATGTCGCTGGAGTTTCTAAAGAGAAGTACATAGTCGGAATCACGTGCACCATTGGCGCATCTGCTGGCTATGGTTTGATGTTTTCCCTTACGCAGGTAGCTTTCCAGAAAGTTCTAAAATCAAATGCATTTAGTGCTGTGTTAGAAATGATAATCTTTGAATCTATAGTTGCAACCTGTGCTACCCTAGTTGGACTTTTCGTCAGCAAAGAGATGAAGGGTTTAAAGAGAGAGATTGAGGAGTTTGAGCTGGGGAGGCTATTCTACTTGGTGACTTTGGTTTGCACAGCTGCAGCATGGCAAGCTTTCAATATTGGTGCAATAGGACTGATTTTTGAGGTTTCTTCCTTATTCTCGAATGTTATATGTGTTTCGGGCTTGCCATTTGTTCCAGTTCTCGCAGTAATATTCTTCAATGATAGTATGGATGGAATAAAGGTTATTGCAACAGTGTTGGCAATCTGGGGATTTGCTTCATATCTCTATCAGCATTATCTCGACAATTCGAACTCCAACCCTGAAACTAAACCTGTAACAGAAATTTCAATGATTCCTTTACTGAAAGAGACCAACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009914 GO:0009926 GO:0009987 GO:0010154 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

386

Amino Acids

42.42

Weight (kDa)

8.03

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	46 - 363	3e-114	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53700 AT3G14370
fragaria_vesca	FvH4_3g16190
malus_domestica	MD05G1211600.v1.1
prunus_persica	Prupe.4G145600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0027261
rosa_laevigata	RLG00000033006
rosa_multiflora	Rmu_co8412521.1_g000001 Rmu_sc0001503.1_g000005
rosa_rugosa	Rorug05G0097900
rosa_samantha	Rh5AG192000 Rh5BG189700 Rh5CG210300 Rh5DG191900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	2 cut(s)	118, 1122
AcvI	CACGTG	1 cut(s)	627
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	3 cut(s)	203, 419, 611
AfiI	CCNNNNNNNGG	1 cut(s)	676
AgsI	TTSAA	6 cut(s)	86, 469, 743, 892, 997, 1128
AhdI	GACNNNNNGTC	1 cut(s)	782
AluBI	AGCT	7 cut(s)	44, 92, 182, 683, 832, 872, 887
AluI	AGCT	7 cut(s)	44, 92, 182, 683, 832, 872, 887
Alw21I	GWGCWC	1 cut(s)	632
Alw26I	GTCTC	3 cut(s)	75, 290, 1142
Alw44I	GTGCAC	1 cut(s)	628
AoxI	GGCC	2 cut(s)	110, 169
ApaLI	GTGCAC	1 cut(s)	628
ApeKI	GCWGC	4 cut(s)	44, 179, 872, 875
ApoI	RAATTY	2 cut(s)	118, 1122
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	532, 865
AsuII	TTCGAA	1 cut(s)	1088
BaeGI	GKGCMC	1 cut(s)	632
BaeI	ACNNNNGTAYC	2 cut(s)	401, 434
BalI	TGGCCA	1 cut(s)	171
BbrPI	CACGTG	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	632
BbvI	GCAGC	4 cut(s)	31, 191, 859, 887
BccI	CCATC	4 cut(s)	226, 340, 551, 1004
BcoDI	GTCTC	3 cut(s)	75, 290, 1142
BfaI	CTAG	4 cut(s)	242, 380, 530, 770
BfmI	CTRYAG	3 cut(s)	309, 747, 873
BfuAI	ACCTGC	1 cut(s)	667
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	4 cut(s)	45, 180, 873, 876
BlsI	GCNGC	4 cut(s)	46, 181, 874, 877
BmeRI	GACNNNNNGTC	1 cut(s)	782
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	134
BmsI	GCATC	3 cut(s)	392, 461, 650
BpiI	GAAGAC	1 cut(s)	457
BpmI	CTGGAG	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	1088
BsaAI	YACGTR	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	1142
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse1I	ACTGG	4 cut(s)	80, 172, 425, 974
Bse3DI	GCAATG	1 cut(s)	325
BseGI	GGATG	3 cut(s)	237, 293, 1015
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	4 cut(s)	80, 172, 425, 974
BseRI	GAGGAG	2 cut(s)	538, 836
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	4 cut(s)	31, 191, 859, 887
BseYI	CCCAGC	1 cut(s)	832
BsgI	GTGCAG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	112, 171
BsiHKAI	GWGCWC	1 cut(s)	632
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	3 cut(s)	75, 290, 1142
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	112, 171
Bso31I	GGTCTC	1 cut(s)	1142
Bsp119I	TTCGAA	1 cut(s)	1088
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp143I	GATC	2 cut(s)	16, 354
BspANI	GGCC	2 cut(s)	112, 171
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	134
BspMAI	CTGCAG	1 cut(s)	877
BspMI	ACCTGC	1 cut(s)	667
BspT104I	TTCGAA	1 cut(s)	1088
BspTNI	GGTCTC	1 cut(s)	1142
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	4 cut(s)	80, 172, 425, 974
BssMI	GATC	2 cut(s)	16, 354
BssNI	GRCGYC	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	201, 1033
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	2 cut(s)	716, 761
BstBAI	YACGTR	1 cut(s)	627
BstBI	TTCGAA	1 cut(s)	1088
BstC8I	GCNNGC	4 cut(s)	395, 649, 885, 962
BstDEI	CTNAG	1 cut(s)	456
BstENI	CCTNNNNNAGG	1 cut(s)	674
BstF5I	GGATG	3 cut(s)	237, 293, 1015
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	2 cut(s)	19, 357
BstMAI	GTCTC	3 cut(s)	75, 290, 1142
BstMBI	GATC	2 cut(s)	16, 354
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 636, 716, 761, 838, 884
BstNSI	RCATGY	1 cut(s)	397
BstSFI	CTRYAG	3 cut(s)	309, 747, 873
BstSLI	GKGCMC	1 cut(s)	632
BstV1I	GCAGC	4 cut(s)	31, 191, 859, 887
BstV2I	GAAGAC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	112, 171
BtsCI	GGATG	3 cut(s)	237, 293, 1015
BtsIMutI	CAGTG	1 cut(s)	1038
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	4 cut(s)	395, 649, 885, 962
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	111
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	202, 418, 610
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	5 cut(s)	394, 553, 569, 580, 879
CviQI	GTAC	3 cut(s)	202, 418, 610
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	2 cut(s)	18, 356
DpnII	GATC	2 cut(s)	16, 354
DraI	TTTAAA	1 cut(s)	807
DriI	GACNNNNNGTC	1 cut(s)	782
EaeI	YGGCCR	1 cut(s)	169
Eam1105I	GACNNNNNGTC	1 cut(s)	782
Eco31I	GGTCTC	1 cut(s)	1142
Eco72I	CACGTG	1 cut(s)	627
EcoNI	CCTNNNNNAGG	1 cut(s)	674
EcoT22I	ATGCAT	1 cut(s)	712
FaeI	CATG	5 cut(s)	397, 556, 572, 583, 882
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	5 cut(s)	393, 552, 568, 579, 878
FauNDI	CATATG	1 cut(s)	227
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	45, 180, 873, 876
FokI	GGATG	3 cut(s)	244, 280, 1022
Fsp4HI	GCNGC	4 cut(s)	45, 180, 873, 876
FspBI	CTAG	4 cut(s)	242, 380, 530, 770
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	4 cut(s)	45, 180, 873, 876
GsaI	CCCAGC	1 cut(s)	836
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	2 cut(s)	112, 171
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	641
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	5 cut(s)	397, 556, 572, 583, 882
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HindIII	AAGCTT	1 cut(s)	885
HinfI	GANTC	4 cut(s)	411, 621, 743, 1132
HphI	GGTGA	2 cut(s)	532, 865
Hpy166II	GTNNAC	4 cut(s)	148, 325, 507, 630
Hpy188I	TCNGA	2 cut(s)	388, 620
Hpy188III	TCNNGA	6 cut(s)	14, 20, 86, 688, 937, 1079
Hpy8I	GTNNAC	4 cut(s)	148, 325, 507, 630
HpyAV	CCTTC	5 cut(s)	338, 431, 493, 545, 793
HpyCH4III	ACNGT	2 cut(s)	201, 1033
HpyCH4IV	ACGT	1 cut(s)	626
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 636, 716, 761, 838, 884
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	1 cut(s)	626
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	5 cut(s)	397, 556, 572, 583, 882
HspAI	GCGC	1 cut(s)	639
Kzo9I	GATC	2 cut(s)	16, 354
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	4 cut(s)	31, 191, 859, 887
LweI	GCATC	3 cut(s)	392, 461, 650
MaeI	CTAG	4 cut(s)	242, 380, 530, 770
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	3 cut(s)	555, 853, 1114
MalI	GATC	2 cut(s)	18, 356
MboI	GATC	2 cut(s)	16, 354
MboII	GAAGA	6 cut(s)	327, 457, 469, 478, 918, 985
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	632
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	8 cut(s)	102, 118, 248, 270, 493, 523, 1084, 1122
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	3 cut(s)	598, 754, 1119
MnlI	CCTC	5 cut(s)	500, 559, 814, 831, 913
Mox20I	TGGCCA	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	712
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	2 cut(s)	123, 806
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	872
MwoI	GCNNNNNNNGC	6 cut(s)	98, 636, 716, 761, 838, 884
NdeI	CATATG	1 cut(s)	227
NdeII	GATC	2 cut(s)	16, 354
NlaIII	CATG	5 cut(s)	397, 556, 572, 583, 882
NlaIV	GGNNCC	1 cut(s)	134
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	853
NsiI	ATGCAT	1 cut(s)	712
NspI	RCATGY	1 cut(s)	397
NspV	TTCGAA	1 cut(s)	1088
PaeI	GCATGC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	621, 743, 1132
PkrI	GCNGC	4 cut(s)	46, 181, 874, 877
PleI	GAGTC	1 cut(s)	405
PmaCI	CACGTG	1 cut(s)	627
PmlI	CACGTG	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	405
Ppu21I	YACGTR	1 cut(s)	627
PspCI	CACGTG	1 cut(s)	627
PspFI	CCCAGC	1 cut(s)	832
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	877
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	872
RsaI	GTAC	3 cut(s)	203, 419, 611
RsaNI	GTAC	3 cut(s)	202, 418, 610
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	123, 806
SatI	GCNGC	4 cut(s)	45, 180, 873, 876
Sau3AI	GATC	2 cut(s)	16, 354
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	632
SfaNI	GCATC	3 cut(s)	392, 461, 650
SfcI	CTRYAG	3 cut(s)	309, 747, 873
SfuI	TTCGAA	1 cut(s)	1088
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SphI	GCATGC	1 cut(s)	397
Sse9I	AATT	8 cut(s)	102, 118, 248, 270, 493, 523, 1084, 1122
SspI	AATATT	2 cut(s)	895, 990
SspMI	CTAG	4 cut(s)	242, 380, 530, 770
TaaI	ACNGT	2 cut(s)	201, 1033
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	4 cut(s)	431, 938, 1080, 1088
TasI	AATT	8 cut(s)	102, 118, 248, 270, 493, 523, 1084, 1122
TatI	WGTACW	2 cut(s)	201, 609
TfiI	GAWTC	3 cut(s)	621, 743, 1132
Tru1I	TTAA	2 cut(s)	123, 806
Tru9I	TTAA	2 cut(s)	123, 806
TscAI	CASTG	1 cut(s)	1038
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	4 cut(s)	44, 179, 872, 875
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	5 cut(s)	327, 557, 596, 812, 1047
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	1038
VneI	GTGCAC	1 cut(s)	628
XagI	CCTNNNNNAGG	1 cut(s)	674
XapI	RAATTY	2 cut(s)	118, 1122
XceI	RCATGY	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	4 cut(s)	242, 380, 530, 770
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.