Rorug05G0164900

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
15235468 .. 15236524
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0164900.1

Sequence Viewer

Length: 870 bp
ATGGGTGTTCCAAGCTCTCTTGCTATACTGAAGCTGAGCAACAACTTTGGGGGATTGAAGAGTATCGATCTTGGAAGCAACCGATTCACTGGAAACCTACCTTCAAAAATTTCTGATGAATTGTTAATCCTACGGCTACGATCCAACTATTTCAGTGGGCATATACCCCATGGGTTGTGCCTTCTTCCCATTCTTCATGTCTTAGACCTTGGTGACAACAACTTTTCAGGGACTATTCCCAAGTGTTTTAATGGAATGTATTCCTTGGTTGAAAGTTTTTCCAATGTGAGTCACTATGATAGTTACGTTGAGCAAATCACATCGATGTCAAAAGGAACAGAACTGATATACAACACGACTCTATTTTTCGTCAACATCATTGATCTTTCGTCAAACAATTTAGAAGGCAAAATCCCTGAAGAAGTAAGTAGCCTCGTTGAATTGGGTACCTTGAACTTGTCAAGAAATCATTTAAGCGGACAGATTCCCTCGAAGATTGGAAATTTGCGATGGTTGGAAACTCTTGATCTCTCACATAATCAACTCTCGGGACCGATTCCTCAAAGTTTGTCTTCTTTAATCTCCTTGTCTCACTTGAATTTGTCCTATAACAACTTGGCCGGAAGAATTCCCTCGAACACACAACTTACTACACTTGATGATTCATCAATATACGAAGCCAATCCATTATTGTGTGGGGTTCCTCTTGCAACCAAGTGCTTGGGAGATAGCACACCTGCTGCTCTGGATGGGAAAGACAACAAAGATGAAGATGACAATGAAAAGCTTGGTTTCTATGGTAGCATCGTACTCGGCTTTATCATAGGCTTTTGGGGTGTTTGTGGCACATTGGTTGTCAAGAATTCATGA
Functional Annotation

Protein Analysis

289

Amino Acids

31.31

Weight (kDa)

5.18

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 124 - 224 6.6e-09 Leucine-rich repeat region
LRR_8 PF13855 167 - 206 3.4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022780)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0037381
rosa_laevigata RLG00000033778
rosa_rugosa Rorug05G0164900
rosa_samantha Rh5AG254000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
Acc36I ACCTGC 1 cut(s) 745
Acc65I GGTACC 1 cut(s) 446
AccB1I GGYRCC 1 cut(s) 446
AciI CCGC 1 cut(s) 477
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 5 cut(s) 108, 502, 598, 627, 862
AcuI CTGAAG 2 cut(s) 50, 438
AfaI GTAC 2 cut(s) 448, 810
AgsI TTSAA 6 cut(s) 58, 105, 272, 440, 454, 598
AluBI AGCT 3 cut(s) 15, 34, 787
AluI AGCT 3 cut(s) 15, 34, 787
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 1 cut(s) 135
Ama87I CYCGRG 1 cut(s) 547
AoxI GGCC 1 cut(s) 618
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 5 cut(s) 108, 502, 598, 627, 862
Asp700I GAANNNNTTC 1 cut(s) 259
Asp718I GGTACC 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 551
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 547
AvaII GGWCC 1 cut(s) 551
BanI GGYRCC 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 564
BbvI GCAGC 1 cut(s) 727
BccI CCATC 2 cut(s) 504, 743
BceAI ACGGC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 793, 827
BcoDI GTCTC 1 cut(s) 594
BfuAI ACCTGC 1 cut(s) 745
BisI GCNGC 1 cut(s) 741
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 742
Bme18I GGWCC 1 cut(s) 551
BmeT110I CYCGRG 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 3 cut(s) 448, 552, 702
BmsI GCATC 1 cut(s) 813
BpiI GAAGAC 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 35
Bsa29I ATCGAT 2 cut(s) 66, 323
BsaJI CCNNGG 3 cut(s) 169, 208, 264
Bse1I ACTGG 1 cut(s) 94
BseCI ATCGAT 2 cut(s) 66, 323
BseDI CCNNGG 3 cut(s) 169, 208, 264
BseGI GGATG 1 cut(s) 754
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 727
BshFI GGCC 1 cut(s) 620
BshNI GGYRCC 1 cut(s) 446
BshVI ATCGAT 2 cut(s) 66, 323
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 1 cut(s) 621
BslFI GGGAC 2 cut(s) 244, 564
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 2 cut(s) 244, 564
BsnI GGCC 1 cut(s) 620
BsoBI CYCGRG 1 cut(s) 547
Bsp143I GATC 4 cut(s) 67, 140, 382, 526
Bsp1720I GCTNAGC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 1 cut(s) 477
BspANI GGCC 1 cut(s) 620
BspCNI CTCAG 1 cut(s) 27
BspDI ATCGAT 2 cut(s) 66, 323
BspHI TCATGA 1 cut(s) 866
BspLI GGNNCC 3 cut(s) 448, 552, 702
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 446
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 169, 208, 264
BssMI GATC 4 cut(s) 67, 140, 382, 526
BssT1I CCWWGG 3 cut(s) 169, 208, 264
Bst6I CTCTTC 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 35, 202
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 754
BstKTI GATC 4 cut(s) 70, 143, 385, 529
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 4 cut(s) 67, 140, 382, 526
BstV1I GCAGC 1 cut(s) 727
BstV2I GAAGAC 1 cut(s) 564
BstXI CCANNNNNNTGG 1 cut(s) 721
Bsu15I ATCGAT 2 cut(s) 66, 323
BsuRI GGCC 1 cut(s) 620
BsuTUI ATCGAT 2 cut(s) 66, 323
BtgI CCRYGG 1 cut(s) 169
BtgZI GCGATG 1 cut(s) 523
BtsCI GGATG 1 cut(s) 754
BtsIMutI CAGTG 2 cut(s) 87, 160
BveI ACCTGC 1 cut(s) 745
CciI TCATGA 1 cut(s) 866
Cfr13I GGNCC 1 cut(s) 551
ClaI ATCGAT 2 cut(s) 66, 323
Csp6I GTAC 2 cut(s) 447, 809
CviAII CATG 3 cut(s) 170, 197, 867
CviJI RGCY 9 cut(s) 15, 34, 136, 432, 620, 680, 787, 816, 828
CviKI_1 RGCY 9 cut(s) 15, 34, 136, 432, 620, 680, 787, 816, 828
CviQI GTAC 2 cut(s) 447, 809
DdeI CTNAG 2 cut(s) 35, 202
DpnI GATC 4 cut(s) 69, 142, 384, 528
DpnII GATC 4 cut(s) 67, 140, 382, 526
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 3 cut(s) 169, 208, 264
Eco47I GGWCC 1 cut(s) 551
Eco57I CTGAAG 2 cut(s) 50, 438
Eco88I CYCGRG 1 cut(s) 547
EcoRI GAATTC 2 cut(s) 627, 862
EcoT14I CCWWGG 3 cut(s) 169, 208, 264
ErhI CCWWGG 3 cut(s) 169, 208, 264
FaeI CATG 3 cut(s) 173, 200, 870
FalI AAGNNNNNCTT 2 cut(s) 556, 588
FaqI GGGAC 2 cut(s) 244, 564
FatI CATG 3 cut(s) 169, 196, 866
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 1 cut(s) 761
Fsp4HI GCNGC 1 cut(s) 741
GluI GCNGC 1 cut(s) 741
HaeIII GGCC 1 cut(s) 620
HapII CCGG 1 cut(s) 621
Hin1II CATG 3 cut(s) 173, 200, 870
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 6 cut(s) 84, 289, 358, 484, 556, 662
HpaII CCGG 1 cut(s) 621
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 6 cut(s) 462, 524, 549, 746, 859, 867
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 3 cut(s) 111, 191, 398
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 1 cut(s) 710
HpyF3I CTNAG 2 cut(s) 35, 202
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 3 cut(s) 173, 200, 870
KpnI GGTACC 1 cut(s) 450
Kzo9I GATC 4 cut(s) 67, 140, 382, 526
LpnPI CCDG 6 cut(s) 75, 213, 429, 634, 731, 750
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 1 cut(s) 813
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 212, 290, 302
MalI GATC 4 cut(s) 69, 142, 384, 528
MboI GATC 4 cut(s) 67, 140, 382, 526
MboII GAAGA 8 cut(s) 70, 176, 185, 431, 505, 564, 636, 782
MluCI AATT 8 cut(s) 108, 119, 397, 440, 502, 598, 627, 862
MlyI GAGTC 2 cut(s) 298, 352
MmeI TCCRAC 2 cut(s) 168, 495
MnlI CCTC 5 cut(s) 443, 499, 570, 643, 714
MroXI GAANNNNTTC 1 cut(s) 259
MseI TTAA 4 cut(s) 125, 249, 473, 578
MslI CAYNNNNRTG 2 cut(s) 323, 691
MspI CCGG 1 cut(s) 621
NcoI CCATGG 1 cut(s) 169
NdeII GATC 4 cut(s) 67, 140, 382, 526
NlaIII CATG 3 cut(s) 173, 200, 870
NlaIV GGNNCC 3 cut(s) 448, 552, 702
NmeAIII GCCGAG 1 cut(s) 792
NmuCI GTSAC 2 cut(s) 212, 290
PagI TCATGA 1 cut(s) 866
PaqCI CACCTGC 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 259
PfeI GAWTC 4 cut(s) 84, 484, 556, 662
PkrI GCNGC 1 cut(s) 742
PleI GAGTC 2 cut(s) 297, 352
PpsI GAGTC 2 cut(s) 297, 352
PspN4I GGNNCC 3 cut(s) 448, 552, 702
PspPI GGNCC 1 cut(s) 551
RsaI GTAC 2 cut(s) 448, 810
RsaNI GTAC 2 cut(s) 447, 809
RseI CAYNNNNRTG 2 cut(s) 323, 691
SaqAI TTAA 4 cut(s) 125, 249, 473, 578
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 4 cut(s) 67, 140, 382, 526
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 2 cut(s) 298, 352
SetI ASST 9 cut(s) 17, 36, 99, 103, 210, 309, 452, 739, 789
SfaNI GCATC 1 cut(s) 813
SinI GGWCC 1 cut(s) 551
SmiMI CAYNNNNRTG 2 cut(s) 323, 691
Sse9I AATT 8 cut(s) 108, 119, 397, 440, 502, 598, 627, 862
SsiI CCGC 1 cut(s) 477
StyI CCWWGG 3 cut(s) 169, 208, 264
TaiI ACGT 1 cut(s) 309
TaqI TCGA 4 cut(s) 66, 323, 491, 635
TaqII GACCGA 1 cut(s) 568
TasI AATT 8 cut(s) 108, 119, 397, 440, 502, 598, 627, 862
TfiI GAWTC 4 cut(s) 84, 484, 556, 662
Tru1I TTAA 4 cut(s) 125, 249, 473, 578
Tru9I TTAA 4 cut(s) 125, 249, 473, 578
TscAI CASTG 2 cut(s) 94, 160
TseFI GTSAC 2 cut(s) 212, 290
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 2 cut(s) 212, 290
TspDTI ATGAA 6 cut(s) 132, 185, 654, 783, 795, 855
TspRI CASTG 2 cut(s) 94, 160
VpaK11BI GGWCC 1 cut(s) 551
XapI RAATTY 5 cut(s) 108, 502, 598, 627, 862
XmnI GAANNNNTTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.