Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012973

Physical Location & Seq

Genomic Coordinates Reverse (-)

27222956 .. 27223222

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0248100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAATAATATTTGCGAAAGAGTCAGGTTCTTCATCAAGAAGCAGGGAGCAATTCGGAAAGGTTACGTACCTTTGCTCATCGGCAAAGAAAGAAAGAAGTACTGCGTTCCTGTGAAGTATCTATCCTATCCAACTTTACAAGAACTGATCATCAAGAACCAACCAGATCAGGACATGTATGATCCAAGAATTGAAGGGCCTCTTGTGCTTCCATGTTTAAGAGGCGACTCGTTTGATCAGTTGCTGAAGAGCTTCAAGAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0071704 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

88

Amino Acids

10.33

Weight (kDa)

9.6

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	17 - 83	1.4e-08	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20930
fragaria_vesca	FvH4_3g26940
malus_domestica	MD03G1161400.v1.1 MD11G1177500.v1.1
prunus_persica	Prupe.6G149600_v2.0.a1 Prupe.6G149600_v2.0.a1 Prupe.6G149600_v2.0.a1
pyrus_communis	pycom11g15140
rosa_chinensis	RchiOBHm_Chr5g0049381
rosa_laevigata	RLG00000034615
rosa_multiflora	Rmu_sc0014052.1_g000012
rosa_roxburghii	Rroxscaffold_1G00032310
rosa_rugosa	Rorug05G0248100
rosa_samantha	Rh5AG324500 Rh5BG335600 Rh5CG360300 Rh5DG347900
rosa_wichuraiana	Rw5G030660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	2 cut(s)	69, 101
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	194, 256
AluBI	AGCT	1 cut(s)	252
AluI	AGCT	1 cut(s)	252
AlwI	GGATC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	244
AoxI	GGCC	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	197
BclI	TGATCA	2 cut(s)	147, 235
BmcAI	AGTACT	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	67
BshFI	GGCC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	147, 166, 181, 235
BspANI	GGCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	242
BssMI	GATC	4 cut(s)	147, 166, 181, 235
Bst6I	CTCTTC	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	67
BstKTI	GATC	4 cut(s)	150, 169, 184, 238
BstMBI	GATC	4 cut(s)	147, 166, 181, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	178
BstSNI	TACGTA	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	199
CaiI	CAGNNNCTG	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	68, 100
CviAII	CATG	2 cut(s)	175, 213
CviJI	RGCY	2 cut(s)	199, 252
CviKI_1	RGCY	2 cut(s)	199, 252
CviQI	GTAC	2 cut(s)	68, 100
DpnI	GATC	4 cut(s)	149, 168, 183, 237
DpnII	GATC	4 cut(s)	147, 166, 181, 235
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco105I	TACGTA	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	197
FaeI	CATG	2 cut(s)	178, 216
FaiI	YATR	3 cut(s)	176, 180, 214
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	2 cut(s)	174, 212
FbaI	TGATCA	2 cut(s)	147, 235
HaeIII	GGCC	1 cut(s)	199
Hin1II	CATG	2 cut(s)	178, 216
HinfI	GANTC	2 cut(s)	21, 227
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	4 cut(s)	37, 154, 170, 256
HpyAV	CCTTC	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	178, 216
Ksp22I	TGATCA	2 cut(s)	147, 235
Kzo9I	GATC	4 cut(s)	147, 166, 181, 235
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	5 cut(s)	10, 29, 123, 155, 177
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	4 cut(s)	149, 168, 183, 237
MboI	GATC	4 cut(s)	147, 166, 181, 235
MboII	GAAGA	2 cut(s)	22, 259
MluCI	AATT	2 cut(s)	51, 189
MlyI	GAGTC	2 cut(s)	30, 221
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	2 cut(s)	210, 215
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	205
NdeII	GATC	4 cut(s)	147, 166, 181, 235
NlaIII	CATG	2 cut(s)	178, 216
NspI	RCATGY	1 cut(s)	178
PciI	ACATGT	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	251
PleI	GAGTC	2 cut(s)	29, 221
PpsI	GAGTC	2 cut(s)	29, 221
Ppu21I	YACGTR	1 cut(s)	67
PscI	ACATGT	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	69, 101
RsaNI	GTAC	2 cut(s)	68, 100
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	218
Sau3AI	GATC	4 cut(s)	147, 166, 181, 235
Sau96I	GGNCC	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	2 cut(s)	30, 221
SetI	ASST	5 cut(s)	29, 64, 69, 73, 254
SnaBI	TACGTA	1 cut(s)	67
Sse9I	AATT	2 cut(s)	51, 189
SspI	AATATT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	69
TasI	AATT	2 cut(s)	51, 189
TatI	WGTACW	1 cut(s)	99
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	17, 22
XceI	RCATGY	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.