Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010727

Physical Location & Seq

Genomic Coordinates Reverse (-)

51024289 .. 51025123

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0377300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGAGAGTCAAAGAATGAAACAGCTCCAGCTCCACTAAGTGGAGACGCCAAAATCAAATACCCCATCGATCTGGTGGTTTTGACCAATTCATTCCAACCTCACAAAGTTTCCCTTGAAAATCTCCTCCTCGCAGCTACCCGACATTTAGGAAAAACAACAGTTCTAACTGCTGAAGCTTGTGCCCTCCGTAATAGCCTTGTGGCTGCTCGTGAGCAAGGCTTCAGGCACATCGAGGTTGAAGGTGACACAAAGATCGTTATAGATGCTGTATATATGTGGGAAACTACAACCACCTTGGAGAGTTCTCAAGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

106

Amino Acids

11.68

Weight (kDa)

5.54

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	43 - 93	5.8e-08	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59250
fragaria_vesca	FvH4_3g36930 FvH4_3g36930 FvH4_3g36930
malus_domestica	MD11G1095200.v1.1
prunus_persica	Prupe.6G070700_v2.0.a1 Prupe.6G070700_v2.0.a1
pyrus_communis	pycom11g08070
rosa_chinensis	RchiOBHm_Chr5g0066331
rosa_laevigata	RLG00000035851
rosa_multiflora	Rmu_sc0006887.1_g000007
rosa_roxburghii	Rroxscaffold_1G00014800
rosa_rugosa	Rorug05G0377300 Rorug05G0377400 Rorug05G0377400
rosa_samantha	Rh5BG452100 Rh5BG452200 Rh5CG474400
rosa_wichuraiana	Rw5G040810 Rw5G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	41
AcuI	CTGAAG	2 cut(s)	195, 208
AcyI	GRCGYC	1 cut(s)	48
AdeI	CACNNNGTG	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	119, 242
AluBI	AGCT	4 cut(s)	26, 32, 137, 179
AluI	AGCT	4 cut(s)	26, 32, 137, 179
Alw26I	GTCTC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	134, 206
AsuHPI	GGTGA	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	187
BauI	CACGAG	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	146, 193
BccI	CCATC	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	39
BisI	GCNGC	2 cut(s)	135, 207
BlsI	GCNGC	2 cut(s)	136, 208
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	294
Bsa29I	ATCGAT	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseRI	GAGGAG	2 cut(s)	116, 119
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	146, 193
BshVI	ATCGAT	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	70, 255
BspDI	ATCGAT	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	70, 255
BssNI	GRCGYC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	38
BstKTI	GATC	2 cut(s)	73, 258
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	70, 255
BstSLI	GKGCMC	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	146, 193
BstXI	CCANNNNNNTGG	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	69
BsuTUI	ATCGAT	1 cut(s)	69
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	1 cut(s)	56
CviJI	RGCY	7 cut(s)	26, 32, 137, 179, 198, 206, 222
CviKI_1	RGCY	7 cut(s)	26, 32, 137, 179, 198, 206, 222
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	2 cut(s)	72, 257
DpnII	GATC	2 cut(s)	70, 255
DraIII	CACNNNGTG	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	297
Eco57I	CTGAAG	2 cut(s)	195, 208
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	39
FaiI	YATR	4 cut(s)	263, 274, 276, 278
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
Fnu4HI	GCNGC	2 cut(s)	135, 207
Fsp4HI	GCNGC	2 cut(s)	135, 207
GluI	GCNGC	2 cut(s)	135, 207
GsuI	CTGGAG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	1 cut(s)	257
Hpy188III	TCNNGA	2 cut(s)	212, 311
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	163
HpyF3I	CTNAG	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	70, 255
LmnI	GCTCC	2 cut(s)	31, 37
LpnPI	CCDG	3 cut(s)	42, 59, 211
Lsp1109I	GCAGC	2 cut(s)	146, 193
LweI	GCATC	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	72, 257
MboI	GATC	2 cut(s)	70, 255
MfeI	CAATTG	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	2 cut(s)	88, 316
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	5 cut(s)	111, 137, 140, 197, 229
MunI	CAATTG	1 cut(s)	316
NdeII	GATC	2 cut(s)	70, 255
NmuCI	GTSAC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	136, 208
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
SatI	GCNGC	2 cut(s)	135, 207
Sau3AI	GATC	2 cut(s)	70, 255
SchI	GAGTC	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	8 cut(s)	28, 34, 103, 139, 181, 240, 247, 299
SfaNI	GCATC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	2 cut(s)	88, 316
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	69, 234
TasI	AATT	2 cut(s)	88, 316
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	2 cut(s)	134, 206
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	33, 81
TspGWI	ACGGA	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.