Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0024677

Physical Location & Seq

Genomic Coordinates Forward (+)

52133167 .. 52134632

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0384000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCTTGCTGTAATAATCTTATTTTCCTCTCTCTCTTCCTCTGCCTCACCTTCTCTTCCTTAGCCTACAGCAACAACAACGACAATGAAACCAAAAATGGAAATGGTGCTCACAACCTTCGGTCCAAGTCTCTAGTCCTGGTCAAGATATGGTGCTTGCTGTTGGTCTTTGTTGGGACTTTTGCAGCAGGAATGTCACCTTACTTCTTAAGGTGGAACGAGGCATTCTTGGTTCTAGGCACACAGTTTGCTGGTGGTGTGTTTTTGGGAACAGCTCTCATGCACTTCCTGAGTGATTCAGACATGACTTTTCAGGGCTTGACTGAAAAGGAGTACCCTTTTGCCTATATGCTGGCATGTGTGGGGTTCTTGATCACTATGCTTGCTGATTGTGTTGTTTCTTATGTGTATGGTAAGCAGGAGGGTAGTACTACTGACCCAGAAGTTCTAGGAAAGGAAGAGGCTCACAAGGGCCATGATACTCACCACATTGCAGCTGTTGGTTCATTCAGGGACACAATTCTGTTGATCGTAGCCTTGTGCTTCCACTCTTTCTTTGAGGGGATTGCAATTGGGATTGCCAAGACAAAACTGGATGCTTGGAAAGCCTTGTGGACAGTGTGTGTGCACAAAATCATTGCAGCTATTGCCATGAGCATTGCCCTTCTCCGCATGATTCCAAATCGGCCATTCATATCATGCATGGCATATGCTTTTGTATTTGCCATTTCCAGTCCAGTTGGTGTAGGAGTTGGGATCATAATAGACGCCAAAACCCAAGGTGCCACAGCAGATTGGATGTTTGCTATTTCTACAGCTTTGGCTTGTGGAGTGTTCATCTATGTGTCAATAAATCATTTGCTTTCGAAAGGTTACACAGCTCAAAATGCAGTCTCTGTTGATGAACCCCATTACAAGTTTTTGGCTGTTGTTTTTGGTGTTGGGGTGATCTCTGTTGCCATGATCTGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

324

Amino Acids

35.26

Weight (kDa)

6.35

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	47 - 319	2.5e-46	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0024677)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g07360
rosa_rugosa	Rorug05G0384000
rosa_samantha	Rh5AG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	782
AccB7I	CCANNNNNTGG	1 cut(s)	966
AciI	CCGC	1 cut(s)	670
AclWI	GGATC	1 cut(s)	764
AcoI	YGGCCR	1 cut(s)	686
AcyI	GRCGYC	1 cut(s)	768
AfaI	GTAC	2 cut(s)	335, 430
AfiI	CCNNNNNNNGG	1 cut(s)	966
AflII	CTTAAG	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	5 cut(s)	275, 497, 644, 818, 881
AluI	AGCT	5 cut(s)	275, 497, 644, 818, 881
Alw21I	GWGCWC	2 cut(s)	112, 630
Alw26I	GTCTC	2 cut(s)	135, 898
Alw44I	GTGCAC	1 cut(s)	626
AlwI	GGATC	1 cut(s)	764
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	2 cut(s)	472, 686
ApaLI	GTGCAC	1 cut(s)	626
ApeKI	GCWGC	3 cut(s)	185, 494, 641
AspS9I	GGNCC	2 cut(s)	123, 472
AsuHPI	GGTGA	4 cut(s)	40, 189, 476, 958
AsuII	TTCGAA	1 cut(s)	866
AvaII	GGWCC	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	782
Bbv12I	GWGCWC	2 cut(s)	112, 630
BbvI	GCAGC	3 cut(s)	197, 506, 653
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	135, 898
BfaI	CTAG	3 cut(s)	134, 236, 449
BfmI	CTRYAG	2 cut(s)	67, 813
BfrI	CTTAAG	1 cut(s)	208
BisI	GCNGC	3 cut(s)	186, 495, 642
BlsI	GCNGC	3 cut(s)	187, 496, 643
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	2 cut(s)	123, 472
BmiI	GGNNCC	1 cut(s)	784
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	586
Bpu10I	CCTNAGC	1 cut(s)	61
Bpu14I	TTCGAA	1 cut(s)	866
BsaHI	GRCGYC	1 cut(s)	768
BsaJI	CCNNGG	1 cut(s)	778
Bsc4I	CCNNNNNNNGG	1 cut(s)	966
Bse1I	ACTGG	3 cut(s)	597, 732, 737
Bse3DI	GCAATG	3 cut(s)	489, 636, 657
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	778
BseGI	GGATG	2 cut(s)	601, 804
BseLI	CCNNNNNNNGG	1 cut(s)	966
BseMI	GCAATG	3 cut(s)	489, 636, 657
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	3 cut(s)	597, 732, 737
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	3 cut(s)	197, 506, 653
BshFI	GGCC	2 cut(s)	474, 688
BshNI	GGYRCC	1 cut(s)	782
BsiHKAI	GWGCWC	2 cut(s)	112, 630
BslFI	GGGAC	2 cut(s)	190, 527
BslI	CCNNNNNNNGG	1 cut(s)	966
BsmAI	GTCTC	2 cut(s)	135, 898
BsmFI	GGGAC	2 cut(s)	190, 527
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	474, 688
Bsp119I	TTCGAA	1 cut(s)	866
Bsp1286I	GDGCHC	2 cut(s)	112, 630
Bsp143I	GATC	5 cut(s)	372, 528, 756, 948, 963
BspACI	CCGC	1 cut(s)	670
BspANI	GGCC	2 cut(s)	474, 688
BspCNI	CTCAG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	784
BspPI	GGATC	1 cut(s)	764
BspT104I	TTCGAA	1 cut(s)	866
BspT107I	GGYRCC	1 cut(s)	782
BspTI	CTTAAG	1 cut(s)	208
BsrDI	GCAATG	3 cut(s)	489, 636, 657
BsrI	ACTGG	3 cut(s)	597, 732, 737
BssECI	CCNNGG	1 cut(s)	778
BssMI	GATC	5 cut(s)	372, 528, 756, 948, 963
BssNI	GRCGYC	1 cut(s)	768
BssT1I	CCWWGG	1 cut(s)	778
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	246, 619
Bst6I	CTCTTC	3 cut(s)	41, 61, 453
BstACI	GRCGYC	1 cut(s)	768
BstAFI	CTTAAG	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBI	TTCGAA	1 cut(s)	866
BstC8I	GCNNGC	4 cut(s)	7, 158, 354, 384
BstDEI	CTNAG	2 cut(s)	61, 290
BstF5I	GGATG	2 cut(s)	601, 804
BstKTI	GATC	5 cut(s)	375, 531, 759, 951, 966
BstMAI	GTCTC	2 cut(s)	135, 898
BstMBI	GATC	5 cut(s)	372, 528, 756, 948, 963
BstMWI	GCNNNNNNNGC	3 cut(s)	605, 647, 887
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	2 cut(s)	67, 813
BstSLI	GKGCMC	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	197, 506, 653
BsuRI	GGCC	2 cut(s)	474, 688
BtsCI	GGATG	2 cut(s)	601, 804
BtsIMutI	CAGTG	1 cut(s)	624
Cac8I	GCNNGC	4 cut(s)	7, 158, 354, 384
CaiI	CAGNNNCTG	1 cut(s)	896
Cfr13I	GGNCC	2 cut(s)	123, 472
CseI	GACGC	1 cut(s)	776
Csp6I	GTAC	2 cut(s)	334, 429
CviAII	CATG	9 cut(s)	280, 304, 357, 476, 652, 673, 699, 703, 961
CviQI	GTAC	2 cut(s)	334, 429
DdeI	CTNAG	2 cut(s)	61, 290
DpnI	GATC	5 cut(s)	374, 530, 758, 950, 965
DpnII	GATC	5 cut(s)	372, 528, 756, 948, 963
EaeI	YGGCCR	1 cut(s)	686
Eam1104I	CTCTTC	3 cut(s)	41, 61, 453
EarI	CTCTTC	3 cut(s)	41, 61, 453
Eco130I	CCWWGG	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	778
EcoT22I	ATGCAT	1 cut(s)	704
ErhI	CCWWGG	1 cut(s)	778
FaeI	CATG	9 cut(s)	283, 307, 360, 479, 655, 676, 702, 706, 964
FaqI	GGGAC	2 cut(s)	190, 527
FatI	CATG	9 cut(s)	279, 303, 356, 475, 651, 672, 698, 702, 960
FauNDI	CATATG	1 cut(s)	709
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	3 cut(s)	186, 495, 642
FokI	GGATG	2 cut(s)	608, 811
Fsp4HI	GCNGC	3 cut(s)	186, 495, 642
FspBI	CTAG	3 cut(s)	134, 236, 449
GluI	GCNGC	3 cut(s)	186, 495, 642
HaeIII	GGCC	2 cut(s)	474, 688
HgaI	GACGC	1 cut(s)	776
Hin1I	GRCGYC	1 cut(s)	768
Hin1II	CATG	9 cut(s)	283, 307, 360, 479, 655, 676, 702, 706, 964
HinfI	GANTC	2 cut(s)	296, 676
HphI	GGTGA	4 cut(s)	40, 189, 476, 958
Hpy166II	GTNNAC	2 cut(s)	615, 628
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	3 cut(s)	145, 289, 370
Hpy8I	GTNNAC	2 cut(s)	615, 628
HpyAV	CCTTC	3 cut(s)	61, 128, 674
HpyCH4III	ACNGT	2 cut(s)	246, 619
HpyCH4V	TGCA	8 cut(s)	185, 283, 494, 569, 628, 641, 702, 890
HpyF10VI	GCNNNNNNNGC	3 cut(s)	605, 647, 887
HpyF3I	CTNAG	2 cut(s)	61, 290
Hsp92I	GRCGYC	1 cut(s)	768
Hsp92II	CATG	9 cut(s)	283, 307, 360, 479, 655, 676, 702, 706, 964
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	5 cut(s)	372, 528, 756, 948, 963
Lsp1109I	GCAGC	3 cut(s)	197, 506, 653
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	3 cut(s)	134, 236, 449
MaeIII	GTNAC	2 cut(s)	195, 872
MalI	GATC	5 cut(s)	374, 530, 758, 950, 965
MboI	GATC	5 cut(s)	372, 528, 756, 948, 963
MboII	GAAGA	3 cut(s)	28, 48, 470
MfeI	CAATTG	1 cut(s)	570
MhlI	GDGCHC	2 cut(s)	112, 630
MluCI	AATT	2 cut(s)	519, 570
MnlI	CCTC	7 cut(s)	38, 50, 56, 214, 415, 454, 553
Mph1103I	ATGCAT	1 cut(s)	704
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	842
MspA1I	CMGCKG	1 cut(s)	497
MspCI	CTTAAG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	605, 647, 887
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	5 cut(s)	372, 528, 756, 948, 963
NlaIII	CATG	9 cut(s)	283, 307, 360, 479, 655, 676, 702, 706, 964
NlaIV	GGNNCC	1 cut(s)	784
NmuCI	GTSAC	1 cut(s)	195
NsiI	ATGCAT	1 cut(s)	704
NspI	RCATGY	1 cut(s)	360
NspV	TTCGAA	1 cut(s)	866
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	296, 676
PflMI	CCANNNNNTGG	1 cut(s)	966
PkrI	GCNGC	3 cut(s)	187, 496, 643
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	784
PspPI	GGNCC	2 cut(s)	123, 472
PstNI	CAGNNNCTG	1 cut(s)	896
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	2 cut(s)	335, 430
RsaNI	GTAC	2 cut(s)	334, 429
RseI	CAYNNNNRTG	1 cut(s)	842
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	3 cut(s)	186, 495, 642
Sau3AI	GATC	5 cut(s)	372, 528, 756, 948, 963
Sau96I	GGNCC	2 cut(s)	123, 472
ScaI	AGTACT	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	112, 630
SfaNI	GCATC	1 cut(s)	586
SfcI	CTRYAG	2 cut(s)	67, 813
SfuI	TTCGAA	1 cut(s)	866
SinI	GGWCC	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	2 cut(s)	519, 570
SsiI	CCGC	1 cut(s)	670
SspMI	CTAG	3 cut(s)	134, 236, 449
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	2 cut(s)	246, 619
TaqI	TCGA	1 cut(s)	866
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	519, 570
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	2 cut(s)	296, 676
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	1 cut(s)	624
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	3 cut(s)	185, 494, 641
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	5 cut(s)	102, 495, 682, 826, 918
TspRI	CASTG	1 cut(s)	624
Van91I	CCANNNNNTGG	1 cut(s)	966
Vha464I	CTTAAG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	123
XceI	RCATGY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XspI	CTAG	3 cut(s)	134, 236, 449
ZrmI	AGTACT	1 cut(s)	430
Zsp2I	ATGCAT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.