Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0024677

Physical Location & Seq

Genomic Coordinates Forward (+)

76108051 .. 76108640

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG443400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGGATGGGAAGGGGCTATGAGGTTGCGAGTGGCTCTGCATCTGGCACAAGCTTTGGTGTATTGCAGCAGCAAAGGACGACCATTGTACTGGCAAAAGAAGCTCTTGTAGATTGTATGAAAGCCCTCGAACTACACCATGTATGGCCCACTGCCTTCTATCTTCAATCTGTTGCCCTAAAGATCCTAGGGATGGATAATGATGCGCAGGAAATGCTGAAAGAAGGCGCATTGTTGGAAGCCATTCAAAACAAAAGAGCTGATAGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

90

Amino Acids

9.74

Weight (kDa)

5.55

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024677)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g07360
rosa_rugosa	Rorug05G0384000
rosa_samantha	Rh5AG443400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	207
AclWI	GGATC	1 cut(s)	178
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	167, 248
AluBI	AGCT	3 cut(s)	54, 104, 260
AluI	AGCT	3 cut(s)	54, 104, 260
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	2 cut(s)	67, 70
Asp700I	GAANNNNTTC	1 cut(s)	243
AspA2I	CCTAGG	1 cut(s)	187
AspLEI	GCGC	2 cut(s)	208, 230
AspS9I	GGNCC	1 cut(s)	147
AvrII	CCTAGG	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	79, 82
BccI	CCATC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	68, 71
BlnI	CCTAGG	1 cut(s)	187
BlsI	GCNGC	2 cut(s)	69, 72
BmgT120I	GGNCC	1 cut(s)	147
BmsI	GCATC	2 cut(s)	50, 193
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	12, 198
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	79, 82
BshFI	GGCC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	193
BsnI	GGCC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	12, 198
BstHHI	GCGC	2 cut(s)	208, 230
BstKTI	GATC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 214
BstV1I	GCAGC	2 cut(s)	79, 82
BstX2I	RGATCY	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	12, 198
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
CfoI	GCGC	2 cut(s)	208, 230
Cfr13I	GGNCC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	8 cut(s)	18, 36, 54, 104, 125, 148, 242, 260
CviKI_1	RGCY	8 cut(s)	18, 36, 54, 104, 125, 148, 242, 260
CviQI	GTAC	1 cut(s)	89
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	1 cut(s)	143
FaiI	YATR	4 cut(s)	21, 119, 141, 145
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	68, 71
FokI	GGATG	2 cut(s)	19, 205
Fsp4HI	GCNGC	2 cut(s)	68, 71
FspBI	CTAG	1 cut(s)	188
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	2 cut(s)	207, 229
GluI	GCNGC	2 cut(s)	68, 71
HaeIII	GGCC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	208, 230
Hin1II	CATG	1 cut(s)	143
Hin6I	GCGC	2 cut(s)	206, 228
HinP1I	GCGC	2 cut(s)	206, 228
HindIII	AAGCTT	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	6, 166, 218
HpyCH4V	TGCA	2 cut(s)	41, 67
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 214
Hsp92II	CATG	1 cut(s)	143
HspAI	GCGC	2 cut(s)	206, 228
Kzo9I	GATC	1 cut(s)	183
LpnPI	CCDG	3 cut(s)	30, 77, 194
Lsp1109I	GCAGC	2 cut(s)	79, 82
LweI	GCATC	2 cut(s)	50, 193
MaeI	CTAG	1 cut(s)	188
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	1 cut(s)	155
MflI	RGATCY	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	2 cut(s)	16, 137
MroXI	GAANNNNTTC	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	101, 214
NdeII	GATC	1 cut(s)	183
NlaIII	CATG	1 cut(s)	143
NsbI	TGCGCA	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	69, 72
PspPI	GGNCC	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SatI	GCNGC	2 cut(s)	68, 71
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	147
SetI	ASST	4 cut(s)	27, 56, 106, 262
SfaNI	GCATC	2 cut(s)	50, 193
SgeI	CNNG	9 cut(s)	42, 57, 63, 104, 119, 140, 152, 200, 221
SspMI	CTAG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	187
TaqI	TCGA	1 cut(s)	129
TatI	WGTACW	1 cut(s)	88
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	2 cut(s)	67, 70
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	157
XmaJI	CCTAGG	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.