Rorug05G0424900
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008983
Physical Location & Seq
Forward (+)
59015479 .. 59020336
4858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0424900.1

Sequence Viewer

Length: 513 bp
ATGTTGGCCGTCAATCTGCAGAGGAAGATCCTAGATTGGAACAGGAACTGTGCAGCAACAACTGCGAGAGCTTTTGTGACTGTGAAAGCCTCCAACCCCAATTTCAGAACTTTCCTTCTTCCTCTTCACTCTCGCAGGTCCCTGTGTCGTGTTAGCGCTACAAACAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCAAATGCTGACAGAGGAGCTCCAACAATATTTGACAAGATCATAGCAAAGGAAATCCCATCGACCATTGTATACGAGGATGATAAGGTCCTGGCATTTCGGGATATCAACCCACAGGCTCCTGTGCATGTTGTTATCATCCCAAAGAATAGGGATGGGTTAACAGAGCTGGGAAAGGCTGAATCTAGGCATGTGGAAATATTGGGTCAACTTCTATATGCTGCAAAAAAAGTTGCTGAGAAAGAAGGTATTCTTCACGGGCAGAGCAAATACAAAAGACAGAGCAAATACGATGGGTATGTGGCATGGTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

170

Amino Acids

18.96

Weight (kDa)

9.69

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DcpS_C PF11969 74 - 150 1.6e-15 Scavenger mRNA decapping enzyme C-term binding
HIT PF01230 82 - 152 1.2e-14 HIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 126
AccI GTMKAC 1 cut(s) 267
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 6
AfeI AGCGCT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 4 cut(s) 71, 191, 215, 364
AluI AGCT 4 cut(s) 71, 191, 215, 364
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 48
Aor51HI AGCGCT 1 cut(s) 157
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 6 cut(s) 53, 176, 179, 191, 194, 416
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 138, 283
AvaII GGWCC 2 cut(s) 138, 283
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 6 cut(s) 65, 163, 166, 178, 206, 403
BccI CCATC 3 cut(s) 262, 344, 482
BciT130I CCWGG 1 cut(s) 287
BfaI CTAG 2 cut(s) 32, 381
BfmI CTRYAG 2 cut(s) 17, 192
BfoI RGCGCY 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 126
BisI GCNGC 6 cut(s) 54, 177, 180, 192, 195, 417
BlsI GCNGC 6 cut(s) 55, 178, 181, 193, 196, 418
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 2 cut(s) 138, 283
BmgT120I GGNCC 2 cut(s) 138, 283
BmiI GGNNCC 2 cut(s) 140, 315
BmrFI CCNGG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 3 cut(s) 280, 333, 355
BseMII CTCAG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 225
BseXI GCAGC 6 cut(s) 65, 163, 166, 178, 206, 403
BseYI CCCAGC 1 cut(s) 364
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 217
BslFI GGGAC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 27, 234
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 140, 315
BspMAI CTGCAG 2 cut(s) 21, 196
BspMI ACCTGC 1 cut(s) 126
BspPI GGATC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 2 cut(s) 27, 234
BssNAI GTATAC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 50, 82
Bst6I CTCTTC 2 cut(s) 129, 165
BstAPI GCANNNNNTGC 2 cut(s) 62, 200
BstDEI CTNAG 1 cut(s) 432
BstF5I GGATG 3 cut(s) 280, 333, 355
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 2 cut(s) 30, 237
BstMBI GATC 2 cut(s) 27, 234
BstMWI GCNNNNNNNGC 3 cut(s) 62, 188, 200
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 2 cut(s) 326, 389
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 2 cut(s) 17, 192
BstV1I GCAGC 6 cut(s) 65, 163, 166, 178, 206, 403
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BstZ17I GTATAC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 3 cut(s) 280, 333, 355
BveI ACCTGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 48
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 138, 283
CviAII CATG 3 cut(s) 323, 386, 501
CviJI RGCY 9 cut(s) 8, 71, 89, 176, 191, 215, 314, 364, 374
CviKI_1 RGCY 9 cut(s) 8, 71, 89, 176, 191, 215, 314, 364, 374
DdeI CTNAG 1 cut(s) 432
DpnI GATC 2 cut(s) 29, 236
DpnII GATC 2 cut(s) 27, 234
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 129, 165
EarI CTCTTC 2 cut(s) 129, 165
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 138, 283
Eco47III AGCGCT 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 215
EcoO109I RGGNCCY 2 cut(s) 138, 283
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 326, 389, 504
FaiI YATR 9 cut(s) 239, 268, 324, 387, 412, 414, 495, 502, 511
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 124
FatI CATG 3 cut(s) 322, 385, 500
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 6 cut(s) 54, 177, 180, 192, 195, 417
FokI GGATG 3 cut(s) 287, 320, 362
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 6 cut(s) 54, 177, 180, 192, 195, 417
FspBI CTAG 2 cut(s) 32, 381
GlaI GCGC 1 cut(s) 157
GluI GCNGC 6 cut(s) 54, 177, 180, 192, 195, 417
GsaI CCCAGC 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 1 cut(s) 8
HhaI GCGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 326, 389, 504
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HincII GTYRAC 2 cut(s) 357, 404
HindII GTYRAC 2 cut(s) 357, 404
HinfI GANTC 1 cut(s) 377
HpaI GTTAAC 1 cut(s) 357
Hpy166II GTNNAC 3 cut(s) 268, 357, 404
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 3 cut(s) 268, 357, 404
HpyAV CCTTC 2 cut(s) 125, 434
HpyCH4III ACNGT 2 cut(s) 50, 82
HpyCH4V TGCA 5 cut(s) 19, 53, 194, 322, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 188, 200
HpyF3I CTNAG 1 cut(s) 432
Hsp92II CATG 3 cut(s) 326, 389, 504
HspAI GCGC 1 cut(s) 156
KspAI GTTAAC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 27, 234
LmnI GCTCC 3 cut(s) 212, 220, 319
LpnPI CCDG 8 cut(s) 28, 121, 155, 272, 296, 299, 330, 350
Lsp1109I GCAGC 6 cut(s) 65, 163, 166, 178, 206, 403
MaeI CTAG 2 cut(s) 32, 381
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 29, 236
MboI GATC 2 cut(s) 27, 234
MboII GAAGA 5 cut(s) 37, 110, 116, 182, 440
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 117, 242
MnlI CCTC 6 cut(s) 15, 100, 132, 166, 203, 265
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 3 cut(s) 62, 188, 200
NdeII GATC 2 cut(s) 27, 234
NlaIII CATG 3 cut(s) 326, 389, 504
NlaIV GGNNCC 2 cut(s) 140, 315
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 2 cut(s) 326, 389
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 6 cut(s) 55, 178, 181, 193, 196, 418
PpuMI RGGWCCY 2 cut(s) 138, 283
Psp124BI GAGCTC 1 cut(s) 217
Psp5II RGGWCCY 2 cut(s) 138, 283
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 140, 315
PspPI GGNCC 2 cut(s) 138, 283
PspPPI RGGWCCY 2 cut(s) 138, 283
PstI CTGCAG 2 cut(s) 21, 196
PstNI CAGNNNCTG 1 cut(s) 48
PsuI RGATCY 1 cut(s) 27
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 6 cut(s) 54, 177, 180, 192, 195, 417
Sau3AI GATC 2 cut(s) 27, 234
Sau96I GGNCC 2 cut(s) 138, 283
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 217
SetI ASST 8 cut(s) 73, 140, 189, 193, 217, 285, 366, 445
SfcI CTRYAG 2 cut(s) 17, 192
SinI GGWCC 2 cut(s) 138, 283
Sse9I AATT 1 cut(s) 100
SspI AATATT 2 cut(s) 225, 396
SspMI CTAG 2 cut(s) 32, 381
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 50, 82
TaqI TCGA 1 cut(s) 257
TasI AATT 1 cut(s) 100
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 6 cut(s) 53, 176, 179, 191, 194, 416
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 183
VpaK11BI GGWCC 2 cut(s) 138, 283
XceI RCATGY 2 cut(s) 326, 389
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 2 cut(s) 32, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.