Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008117

Physical Location & Seq

Genomic Coordinates Forward (+)

79382735 .. 79384792

Gene Structure 2058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0595500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGGTTTATGTTTTGCAAGATTCATTGTCCTCCCTTTATTTGCTTTTGTAAGCCTTCCCCTCATATATACACTCCTGGACCACTCAAGCTAGAGAATACCCCACCTCCAAACCCACATGTTCCTTCTTCAAAACCTGACGCCTCTGATCAGTTACCTAATGACCCTATTGAGATCAAGGAAGAGAGCTTAGCTGAGAATCCAAAACCAGCTGAGAATTCTCTGAAAAGTAATCTCAGAAAGCCGGATTCTTCAGACCCTGCTGCTCCAAAAGACGAGATGAAGAAGAGAGTGCAGTGGATGGACTTTGTAGGGAAGGACCTTGTTGAGATCAGGGAATTTGAATGCAGTGAATTAGATGACACTGACAACGAATACGAGAACAGAAGAGGCTGCATTTGTGTTATTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 FBA_1 Lzipper-MIP1

Protein Analysis

137

Amino Acids

15.63

Weight (kDa)

5.09

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07820 FvH4_2g07820 FvH4_2g07820 FvH4_2g07820 FvH4_2g07820
malus_domestica	MD10G1083700.v1.1
prunus_persica	Prupe.8G106700_v2.0.a1 Prupe.8G106700_v2.0.a1 Prupe.8G106700_v2.0.a1 Prupe.8G106700_v2.0.a1 Prupe.8G106700_v2.0.a1 Prupe.8G106700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262231
rosa_laevigata	RLG00000014444
rosa_multiflora	Rmu_sc0002510.1_g000026
rosa_roxburghii	Rroxscaffold_7G00207910
rosa_rugosa	Rorug05G0595400 Rorug05G0595500 Rorug05G0595600
rosa_samantha	Rh6AG115700 Rh6BG110000 Rh6CG107700 Rh6DG098000
rosa_wichuraiana	Rw6G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	217, 338
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	141
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	132, 344
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	4 cut(s)	91, 189, 194, 212
AluI	AGCT	4 cut(s)	91, 189, 194, 212
AlwNI	CAGNNNCTG	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	263, 393
ApoI	RAATTY	2 cut(s)	217, 338
AspS9I	GGNCC	2 cut(s)	80, 319
AvaII	GGWCC	2 cut(s)	80, 319
BbvI	GCAGC	2 cut(s)	250, 380
BccI	CCATC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	148
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	264, 394
BlpI	GCTNAGC	1 cut(s)	190
BlsI	GCNGC	2 cut(s)	265, 395
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	2 cut(s)	80, 319
BmgT120I	GGNCC	2 cut(s)	80, 319
BmrFI	CCNGG	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
BseBI	CCWGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	186, 204, 250
BseXI	GCAGC	2 cut(s)	250, 380
BsgI	GTGCAG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	350
Bsp143I	GATC	3 cut(s)	148, 174, 330
Bsp1720I	GCTNAGC	1 cut(s)	190
BspCNI	CTCAG	3 cut(s)	187, 205, 249
BssMI	GATC	3 cut(s)	148, 174, 330
BssNI	GRCGYC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	78
Bst6I	CTCTTC	3 cut(s)	177, 281, 382
BstACI	GRCGYC	1 cut(s)	141
BstDEI	CTNAG	4 cut(s)	190, 195, 213, 236
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	3 cut(s)	151, 177, 333
BstMBI	GATC	3 cut(s)	148, 174, 330
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	250, 380
BtsCI	GGATG	1 cut(s)	306
BtsI	GCAGTG	2 cut(s)	302, 355
BtsIMutI	CAGTG	3 cut(s)	302, 355, 363
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	80, 319
CseI	GACGC	1 cut(s)	149
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	7 cut(s)	55, 91, 189, 194, 212, 244, 393
CviKI_1	RGCY	7 cut(s)	55, 91, 189, 194, 212, 244, 393
DdeI	CTNAG	4 cut(s)	190, 195, 213, 236
DpnI	GATC	3 cut(s)	150, 176, 332
DpnII	GATC	3 cut(s)	148, 174, 330
Eam1104I	CTCTTC	3 cut(s)	177, 281, 382
EarI	CTCTTC	3 cut(s)	177, 281, 382
Eco47I	GGWCC	2 cut(s)	80, 319
Eco57I	CTGAAG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	122
FaiI	YATR	6 cut(s)	11, 66, 68, 70, 120, 412
FatI	CATG	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	264, 394
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	264, 394
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	264, 394
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	122
HinfI	GANTC	3 cut(s)	22, 199, 248
HpaII	CCGG	1 cut(s)	245
Hpy188I	TCNGA	4 cut(s)	148, 225, 239, 256
HpyAV	CCTTC	3 cut(s)	66, 135, 310
HpyCH4V	TGCA	4 cut(s)	18, 295, 348, 396
HpyF3I	CTNAG	4 cut(s)	190, 195, 213, 236
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	148, 174, 330
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	7 cut(s)	63, 90, 150, 222, 258, 273, 319
Lsp1109I	GCAGC	2 cut(s)	250, 380
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	3 cut(s)	150, 176, 332
MboI	GATC	3 cut(s)	148, 174, 330
MboII	GAAGA	6 cut(s)	120, 194, 243, 295, 298, 399
MluCI	AATT	3 cut(s)	217, 338, 353
MnlI	CCTC	5 cut(s)	42, 72, 117, 154, 383
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	3 cut(s)	148, 174, 330
NlaIII	CATG	1 cut(s)	122
NspI	RCATGY	1 cut(s)	122
PciI	ACATGT	1 cut(s)	118
PctI	GAATGC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	22, 199, 248
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	265, 395
PpuMI	RGGWCCY	1 cut(s)	319
PscI	ACATGT	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	80, 319
PspPPI	RGGWCCY	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	212
SatI	GCNGC	2 cut(s)	264, 394
Sau3AI	GATC	3 cut(s)	148, 174, 330
Sau96I	GGNCC	2 cut(s)	80, 319
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	9 cut(s)	8, 93, 109, 139, 160, 191, 196, 214, 324
SinI	GGWCC	2 cut(s)	80, 319
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	217, 338, 353
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	76
TasI	AATT	3 cut(s)	217, 338, 353
TfiI	GAWTC	3 cut(s)	22, 199, 248
TscAI	CASTG	3 cut(s)	302, 355, 370
TseI	GCWGC	2 cut(s)	263, 393
TspDTI	ATGAA	2 cut(s)	14, 296
TspRI	CASTG	3 cut(s)	302, 355, 370
VpaK11BI	GGWCC	2 cut(s)	80, 319
XapI	RAATTY	2 cut(s)	217, 338
XceI	RCATGY	1 cut(s)	122
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.