Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008772

Physical Location & Seq

Genomic Coordinates Forward (+)

79430228 .. 79434878

Gene Structure 4651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0596200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGCCACCGTTGCTCCTCCTGCAGATCAAGCAGCAGATTTGCTTCAGAAGTTGTCAATAGATTCTCAGACCAAGACCCTGGAAATTCCAGAGCCTACAAAGAAGCCTTCTGTTAACCAATATGGGTCTATTGATTCTGGCAACGCTGCAAATGGTCAGATCCAATCTGATCGCTCTGTGACTCCACTGTCGACTGATTTCATGGATCAATCTTTCTCCTATCTCCCAAATGGTTATCCATCAACAGCCTATTACTATGGAGGCTATGATGGGACTGCCGACTGGGATGAGTACTCGAGATATGTGAATCCAGAGGGAGTAGATATGACTTCCGGGGTTTATGGAGATAACGGGTCTCTTATGTACCACCATGGTTATGGGTATGCACCGTATGGGCCTTATTCACCAGCAGCTTCCCCTGTTCCAACTATGGGAAATGATGGTCAATTATATGGTCCTCAACACTACCAGTATCCGCCCTATTTCCAGCCGCTGACTCCAACCAGTGGGCCATACACTCCCAGTCCTGTGGCCCCTCAGAATGAGGTATCCACATCTTTAGCTGCTGACCAAAAGCCTCAGCCTGTGGAAACAGCTAATGGAATTTCTAATGGCATTGCAAATATGAAAGGAAATAACATTTCAGCTCCCTTATCGACATATCAAACCACATCTTTCAACTCCAATGGTTCATATGGACGAGGTGCTTTACCTGCACGTGTTCCTACTCCTGGGTACCAGGACCCAAGATATGGTTATGACACAGTACGTTCTCCAATTCCTTGGTTAGATGCCCCACTTTTTTCAGATGGGCAGCATAGACCTGTGGCAAATACACCCATTACTTCTTCAAACTCGAATGGCAATAGAATTCCATCTTTGAGGAATCAGAACTACCGTCCAAATTCTCACTTCATGGGTTTGCACCACCCAAGACCGCTGTCAGGAATAGGTACAGCTCAAGGGTTTATGAATAGCAGCATGTACCCAAGCAAGCTATTTGGCCAGTATGGAAACACAGTTAGATCCGGTCTGGGATTTGGGTCTCATGGTTATGATTCGCGAACCAATGGACGCACATGGCTGGCTGTTGACAACAAGTATAAACAACCCAGGGGACGTAATGGTGGTTACTATGGATATGGTAATGAGAACTCGGATGGTTTAAATGAACTCAACAGAGGACCTCGGGCGAGAGGCTCAAAGAACCAAAAGAGTTTTCCCCCTAGTGCATTGGCTATCAAGGGACAGAACGTGCCAGCAAATCTTAGTAATGATGAGGAAAAGGATACAAGTTCTGTACCAGACAGAGAGCAATACAACAAAGCAGATTTTCCGGAGGATTATACTGATGCCAAATTTTTCATCATCAAGTCATATAGTGAGGATGATGTCCATAAGAGCATCAAGTATAATGTTTGGGCCAGCACACCAAATGGCAACAAGAAGCTTCATGCAGCATATCAGGAGGCCCAGGAGAAGACCGGCGGCTGCCCTGTATTTCTTTTTTTCTCGGTCAATACCAGTGGGCAATTTGTCGGTGTCGCTGAGATGTTGGGGCCTGTTGATTTTAACAAGAATTTGGAGTACTGGCAGCAAGACAAATGGAATGGCTGTTTCTCTGTCAAATGGCATATTGTTAAAGACGTTCCTAACAGTTTGCTGAAGCATATTACTCTTGAAAATAATGAGAACAAGCCTGTGACTAATAGTAGGGACACTCAAGAGGTTAAGTTGGAACCAGGGCTTAAAATGATCAAAATATTCAAGGAGCATTCAAGCAAAACATGCATTTTGGATGACTTTGGATTTTATGAGTCCCGCCAGAAGACAATTCAGGAGAAGAAGGCTAAGCAACAGCAGCAGTTTCAGAAGCAGCAGGTATGGGAAGGAAAAACCCTCGATGAGAAGAAAGAGGTGGTGACAAACGGGCAAGTCAAAACACAAAATTCATCGGATGTTCCCTCTGAGATAACTAAGGAGTCTATCTCAATAGTGCATGCCAGCGAGGAGCTGAAACCTGCAGAAAATGGATCAATTGCAACTGGAGAAGCCCCAAAGGGTGCTAAGCCGGTTGTGGCTGAGAAGAGGGTTGTAGCAAATGGGGTTGCAAACGGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796 GO:0098807

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

707

Amino Acids

77.71

Weight (kDa)

6.72

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YTH	PF04146	452 - 590	4.2e-49	YT521-B-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18890
fragaria_vesca	FvH4_2g07870 FvH4_2g07870 FvH4_2g07870 FvH4_2g07870 FvH4_2g07870 FvH4_2g07870 FvH4_2g07870
malus_domestica	MD10G1083200.v1.1
prunus_persica	Prupe.8G106300_v2.0.a1 Prupe.8G106300_v2.0.a1
pyrus_communis	pycom10g06530
rosa_chinensis	RchiOBHm_Chr6g0262291
rosa_laevigata	RLG00000014439
rosa_multiflora	Rmu_sc0002510.1_g000032
rosa_rugosa	Rorug05G0596200 Rorug05G0596200 Rorug05G0596300
rosa_samantha	Rh6AG116500 Rh6BG110700 Rh6CG108100 Rh6DG098500
rosa_wichuraiana	Rw6G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	187
Acc36I	ACCTGC	3 cut(s)	721, 1870, 2029
Acc65I	GGTACC	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	735
AccB7I	CCANNNNNTGG	2 cut(s)	506, 752
AccI	GTMKAC	1 cut(s)	191
AccII	CGCG	1 cut(s)	1063
AccIII	TCCGGA	1 cut(s)	1336
AciI	CCGC	5 cut(s)	476, 491, 938, 1488, 1822
AclWI	GGATC	4 cut(s)	154, 213, 1020, 2041
AcoI	YGGCCR	2 cut(s)	3, 1003
AcsI	RAATTY	7 cut(s)	84, 603, 870, 904, 1358, 1579, 1948
AcuI	CTGAAG	2 cut(s)	29, 1685
AcvI	CACGTG	1 cut(s)	719
AfaI	GTAC	8 cut(s)	293, 365, 737, 768, 955, 986, 1302, 1589
AfiI	CCNNNNNNNGG	5 cut(s)	431, 506, 731, 752, 944
AflIII	ACRYGT	1 cut(s)	718
AgsI	TTSAA	5 cut(s)	679, 852, 1682, 1768, 1779
AjnI	CCWGG	6 cut(s)	78, 730, 738, 1112, 1473, 1741
AjuI	GAANNNNNNNTTGG	2 cut(s)	1203, 1235
AluBI	AGCT	8 cut(s)	413, 563, 596, 647, 959, 997, 1450, 2014
AluI	AGCT	8 cut(s)	413, 563, 596, 647, 959, 997, 1450, 2014
Alw26I	GTCTC	2 cut(s)	360, 1050
AlwI	GGATC	4 cut(s)	154, 213, 1020, 2041
AlwNI	CAGNNNCTG	1 cut(s)	493
Ama87I	CYCGRG	2 cut(s)	295, 1188
Aor13HI	TCCGGA	1 cut(s)	1336
AoxI	GGCC	8 cut(s)	3, 395, 509, 531, 1003, 1422, 1470, 1559
ApoI	RAATTY	7 cut(s)	84, 603, 870, 904, 1358, 1579, 1948
Asp718I	GGTACC	1 cut(s)	735
AspS9I	GGNCC	9 cut(s)	395, 455, 509, 532, 742, 1184, 1422, 1471, 1559
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	396, 1933
AvaI	CYCGRG	2 cut(s)	295, 1188
AvaII	GGWCC	3 cut(s)	455, 742, 1184
BalI	TGGCCA	2 cut(s)	5, 1005
BanI	GGYRCC	1 cut(s)	735
BbrPI	CACGTG	1 cut(s)	719
BbsI	GAAGAC	2 cut(s)	1487, 1835
BbvCI	CCTCAGC	1 cut(s)	579
BccI	CCATC	6 cut(s)	247, 263, 434, 803, 883, 1154
BciT130I	CCWGG	6 cut(s)	80, 732, 740, 1114, 1475, 1743
BciVI	GTATCC	3 cut(s)	483, 559, 1282
BclI	TGATCA	1 cut(s)	1755
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	360, 1050
BfaI	CTAG	2 cut(s)	1227, 2122
BfmI	CTRYAG	2 cut(s)	21, 2022
BfuAI	ACCTGC	3 cut(s)	721, 1870, 2029
BfuI	GTATCC	3 cut(s)	483, 559, 1282
BlpI	GCTNAGC	2 cut(s)	1851, 2067
BmcAI	AGTACT	2 cut(s)	293, 1589
Bme1390I	CCNGG	7 cut(s)	80, 334, 732, 740, 1114, 1475, 1743
Bme18I	GGWCC	3 cut(s)	455, 742, 1184
BmeT110I	CYCGRG	2 cut(s)	295, 1188
BmgT120I	GGNCC	9 cut(s)	395, 455, 509, 532, 742, 1184, 1422, 1471, 1559
BmiI	GGNNCC	5 cut(s)	534, 737, 744, 1560, 1740
BmrFI	CCNGG	7 cut(s)	80, 334, 732, 740, 1114, 1475, 1743
BmrI	ACTGGG	2 cut(s)	292, 516
BmsI	GCATC	3 cut(s)	781, 1342, 1413
BmuI	ACTGGG	2 cut(s)	292, 516
BoxI	GACNNNNGTC	1 cut(s)	940
BpiI	GAAGAC	2 cut(s)	1487, 1835
BplI	GAGNNNNNCTC	2 cut(s)	1973, 2005
BpmI	CTGGAG	1 cut(s)	2067
Bpu10I	CCTNAGC	1 cut(s)	579
Bpu1102I	GCTNAGC	2 cut(s)	1851, 2067
BpuEI	CTTGAG	2 cut(s)	945, 1707
BpuMI	CCSGG	1 cut(s)	334
BsaAI	YACGTR	1 cut(s)	719
BsaI	GGTCTC	2 cut(s)	360, 1050
BsaWI	WCCGGW	2 cut(s)	1028, 1336
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	5 cut(s)	431, 506, 731, 752, 944
Bse118I	RCCGGY	2 cut(s)	1484, 2071
Bse1I	ACTGG	8 cut(s)	287, 469, 504, 522, 1006, 1524, 1595, 2050
Bse3DI	GCAATG	1 cut(s)	615
BseAI	TCCGGA	1 cut(s)	1336
BseBI	CCWGG	6 cut(s)	80, 732, 740, 1114, 1475, 1743
BseGI	GGATG	5 cut(s)	292, 1165, 1393, 1804, 1963
BseLI	CCNNNNNNNGG	5 cut(s)	431, 506, 731, 752, 944
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	6 cut(s)	80, 551, 593, 1539, 1959, 2073
BseNI	ACTGG	8 cut(s)	287, 469, 504, 522, 1006, 1524, 1595, 2050
BseRI	GAGGAG	2 cut(s)	6, 2024
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	1063
BshFI	GGCC	8 cut(s)	5, 397, 511, 533, 1005, 1424, 1472, 1561
BshNI	GGYRCC	1 cut(s)	735
BsiHKCI	CYCGRG	2 cut(s)	295, 1188
BsiSI	CCGG	5 cut(s)	333, 1029, 1337, 1485, 2072
BslFI	GGGAC	5 cut(s)	286, 1131, 1260, 1730, 1804
BslI	CCNNNNNNNGG	5 cut(s)	431, 506, 731, 752, 944
BsmAI	GTCTC	2 cut(s)	360, 1050
BsmFI	GGGAC	5 cut(s)	286, 1131, 1260, 1730, 1804
BsmI	GAATGC	1 cut(s)	1774
BsnI	GGCC	8 cut(s)	5, 397, 511, 533, 1005, 1424, 1472, 1561
Bso31I	GGTCTC	2 cut(s)	360, 1050
BsoBI	CYCGRG	2 cut(s)	295, 1188
Bsp13I	TCCGGA	1 cut(s)	1336
Bsp143I	GATC	7 cut(s)	25, 159, 169, 205, 1025, 1755, 2033
Bsp1720I	GCTNAGC	2 cut(s)	1851, 2067
Bsp19I	CCATGG	1 cut(s)	370
Bsp68I	TCGCGA	1 cut(s)	1063
BspACI	CCGC	5 cut(s)	476, 491, 938, 1488, 1822
BspANI	GGCC	8 cut(s)	5, 397, 511, 533, 1005, 1424, 1472, 1561
BspCNI	CTCAG	6 cut(s)	79, 550, 592, 1540, 1960, 2074
BspEI	TCCGGA	1 cut(s)	1336
BspFNI	CGCG	1 cut(s)	1063
BspLI	GGNNCC	5 cut(s)	534, 737, 744, 1560, 1740
BspMAI	CTGCAG	2 cut(s)	25, 2026
BspMI	ACCTGC	3 cut(s)	721, 1870, 2029
BspPI	GGATC	4 cut(s)	154, 213, 1020, 2041
BspT107I	GGYRCC	1 cut(s)	735
BspTNI	GGTCTC	2 cut(s)	360, 1050
BsrDI	GCAATG	1 cut(s)	615
BsrFI	RCCGGY	2 cut(s)	1484, 2071
BsrI	ACTGG	8 cut(s)	287, 469, 504, 522, 1006, 1524, 1595, 2050
BssAI	RCCGGY	2 cut(s)	1484, 2071
BssMI	GATC	7 cut(s)	25, 159, 169, 205, 1025, 1755, 2033
BssT1I	CCWWGG	2 cut(s)	370, 782
Bst2UI	CCWGG	6 cut(s)	80, 732, 740, 1114, 1475, 1743
Bst4CI	ACNGT	8 cut(s)	10, 189, 390, 766, 899, 1021, 1658, 2117
Bst6I	CTCTTC	1 cut(s)	2081
BstAPI	GCANNNNNTGC	1 cut(s)	1788
BstBAI	YACGTR	1 cut(s)	719
BstC8I	GCNNGC	6 cut(s)	995, 1086, 1260, 1426, 2001, 2005
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	5 cut(s)	292, 1165, 1393, 1804, 1963
BstFNI	CGCG	1 cut(s)	1063
BstKTI	GATC	7 cut(s)	28, 162, 172, 208, 1028, 1758, 2036
BstMAI	GTCTC	2 cut(s)	360, 1050
BstMBI	GATC	7 cut(s)	25, 159, 169, 205, 1025, 1755, 2033
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 20, 29, 713, 1788, 1861
BstNI	CCWGG	6 cut(s)	80, 732, 740, 1114, 1475, 1743
BstNSI	RCATGY	3 cut(s)	985, 1791, 2003
BstPAI	GACNNNNGTC	1 cut(s)	940
BstSCI	CCNGG	7 cut(s)	78, 332, 730, 738, 1112, 1473, 1741
BstSFI	CTRYAG	2 cut(s)	21, 2022
BstUI	CGCG	1 cut(s)	1063
BstV2I	GAAGAC	2 cut(s)	1487, 1835
BstX2I	RGATCY	2 cut(s)	159, 1025
BstXI	CCANNNNNNTGG	4 cut(s)	79, 377, 529, 783
BstYI	RGATCY	2 cut(s)	159, 1025
BsuI	GTATCC	3 cut(s)	483, 559, 1282
BsuRI	GGCC	8 cut(s)	5, 397, 511, 533, 1005, 1424, 1472, 1561
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	5 cut(s)	292, 1165, 1393, 1804, 1963
BtsIMutI	CAGTG	3 cut(s)	185, 511, 1531
BtuMI	TCGCGA	1 cut(s)	1063
BveI	ACCTGC	3 cut(s)	721, 1870, 2029
Cac8I	GCNNGC	6 cut(s)	995, 1086, 1260, 1426, 2001, 2005
CaiI	CAGNNNCTG	1 cut(s)	493
Cfr10I	RCCGGY	2 cut(s)	1484, 2071
Cfr13I	GGNCC	9 cut(s)	395, 455, 509, 532, 742, 1184, 1422, 1471, 1559
CseI	GACGC	1 cut(s)	1083
Csp6I	GTAC	8 cut(s)	292, 364, 736, 767, 954, 985, 1301, 1588
CspCI	CAANNNNNGTGG	2 cut(s)	1507, 1542
CviAII	CATG	9 cut(s)	202, 371, 916, 982, 1049, 1080, 1454, 1788, 2000
CviQI	GTAC	8 cut(s)	292, 364, 736, 767, 954, 985, 1301, 1588
DpnI	GATC	7 cut(s)	27, 161, 171, 207, 1027, 1757, 2035
DpnII	GATC	7 cut(s)	25, 159, 169, 205, 1025, 1755, 2033
DraI	TTTAAA	1 cut(s)	1167
DrdI	GACNNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	1 cut(s)	187
EaeI	YGGCCR	2 cut(s)	3, 1003
Eam1104I	CTCTTC	1 cut(s)	2081
EarI	CTCTTC	1 cut(s)	2081
EciI	GGCGGA	1 cut(s)	465
Eco130I	CCWWGG	2 cut(s)	370, 782
Eco31I	GGTCTC	2 cut(s)	360, 1050
Eco47I	GGWCC	3 cut(s)	455, 742, 1184
Eco57I	CTGAAG	2 cut(s)	29, 1685
Eco72I	CACGTG	1 cut(s)	719
Eco88I	CYCGRG	2 cut(s)	295, 1188
EcoO109I	RGGNCCY	3 cut(s)	742, 1184, 1559
EcoRI	GAATTC	1 cut(s)	870
EcoRII	CCWGG	6 cut(s)	78, 730, 738, 1112, 1473, 1741
EcoT14I	CCWWGG	2 cut(s)	370, 782
EcoT22I	ATGCAT	1 cut(s)	1793
ErhI	CCWWGG	2 cut(s)	370, 782
FaeI	CATG	9 cut(s)	205, 374, 919, 985, 1052, 1083, 1457, 1791, 2003
FaqI	GGGAC	5 cut(s)	286, 1131, 1260, 1730, 1804
FatI	CATG	9 cut(s)	201, 370, 915, 981, 1048, 1079, 1453, 1787, 1999
FauI	CCCGC	1 cut(s)	1829
FauNDI	CATATG	1 cut(s)	694
FbaI	TGATCA	1 cut(s)	1755
FblI	GTMKAC	1 cut(s)	191
FokI	GGATG	5 cut(s)	299, 1172, 1400, 1811, 1970
FspBI	CTAG	2 cut(s)	1227, 2122
GsuI	CTGGAG	1 cut(s)	2067
HaeIII	GGCC	8 cut(s)	5, 397, 511, 533, 1005, 1424, 1472, 1561
HapII	CCGG	5 cut(s)	333, 1029, 1337, 1485, 2072
HgaI	GACGC	1 cut(s)	1083
Hin1II	CATG	9 cut(s)	205, 374, 919, 985, 1052, 1083, 1457, 1791, 2003
HincII	GTYRAC	3 cut(s)	115, 192, 1093
HindII	GTYRAC	3 cut(s)	115, 192, 1093
HindIII	AAGCTT	1 cut(s)	1448
HinfI	GANTC	9 cut(s)	62, 134, 181, 307, 496, 886, 1058, 1817, 1982
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	5 cut(s)	333, 1029, 1337, 1485, 2072
HphI	GGTGA	2 cut(s)	396, 1933
Hpy166II	GTNNAC	3 cut(s)	115, 192, 1093
Hpy8I	GTNNAC	3 cut(s)	115, 192, 1093
HpyAV	CCTTC	3 cut(s)	117, 1840, 1883
HpyCH4III	ACNGT	8 cut(s)	10, 189, 390, 766, 899, 1021, 1658, 2117
HpyCH4IV	ACGT	5 cut(s)	718, 769, 1120, 1254, 1647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 20, 29, 713, 1788, 1861
HpySE526I	ACGT	5 cut(s)	718, 769, 1120, 1254, 1647
Hsp92II	CATG	9 cut(s)	205, 374, 919, 985, 1052, 1083, 1457, 1791, 2003
Kpn2I	TCCGGA	1 cut(s)	1336
KpnI	GGTACC	1 cut(s)	739
Ksp22I	TGATCA	1 cut(s)	1755
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	7 cut(s)	25, 159, 169, 205, 1025, 1755, 2033
LmnI	GCTCC	4 cut(s)	19, 652, 1771, 2011
LweI	GCATC	3 cut(s)	781, 1342, 1413
MaeI	CTAG	2 cut(s)	1227, 2122
MaeII	ACGT	5 cut(s)	718, 769, 1120, 1254, 1647
MaeIII	GTNAC	4 cut(s)	178, 1130, 1702, 1921
MalI	GATC	7 cut(s)	27, 161, 171, 207, 1027, 1757, 2035
MboI	GATC	7 cut(s)	25, 159, 169, 205, 1025, 1755, 2033
MboII	GAAGA	6 cut(s)	840, 1492, 1840, 1855, 1921, 2098
MfeI	CAATTG	1 cut(s)	2037
MflI	RGATCY	2 cut(s)	159, 1025
MlsI	TGGCCA	2 cut(s)	5, 1005
MluNI	TGGCCA	2 cut(s)	5, 1005
MlyI	GAGTC	4 cut(s)	175, 490, 1826, 1991
MmeI	TCCRAC	3 cut(s)	449, 524, 1716
Mox20I	TGGCCA	2 cut(s)	5, 1005
Mph1103I	ATGCAT	1 cut(s)	1793
MroI	TCCGGA	1 cut(s)	1336
MscI	TGGCCA	2 cut(s)	5, 1005
MseI	TTAA	6 cut(s)	114, 1166, 1572, 1641, 1731, 1749
MslI	CAYNNNNRTG	2 cut(s)	375, 1053
Msp20I	TGGCCA	2 cut(s)	5, 1005
MspA1I	CMGCKG	2 cut(s)	493, 940
MspI	CCGG	5 cut(s)	333, 1029, 1337, 1485, 2072
MspR9I	CCNGG	7 cut(s)	80, 334, 732, 740, 1114, 1475, 1743
MunI	CAATTG	1 cut(s)	2037
Mva1269I	GAATGC	1 cut(s)	1774
MvaI	CCWGG	6 cut(s)	80, 732, 740, 1114, 1475, 1743
MvnI	CGCG	1 cut(s)	1063
MwoI	GCNNNNNNNGC	6 cut(s)	11, 20, 29, 713, 1788, 1861
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	370
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	7 cut(s)	25, 159, 169, 205, 1025, 1755, 2033
NlaIII	CATG	9 cut(s)	205, 374, 919, 985, 1052, 1083, 1457, 1791, 2003
NlaIV	GGNNCC	5 cut(s)	534, 737, 744, 1560, 1740
NmuCI	GTSAC	3 cut(s)	178, 1702, 1921
NruI	TCGCGA	1 cut(s)	1063
NsiI	ATGCAT	1 cut(s)	1793
NspI	RCATGY	3 cut(s)	985, 1791, 2003
PaeI	GCATGC	1 cut(s)	2003
PaeR7I	CTCGAG	1 cut(s)	295
PasI	CCCWGGG	1 cut(s)	1113
PctI	GAATGC	1 cut(s)	1774
PfeI	GAWTC	5 cut(s)	62, 134, 307, 886, 1058
PflMI	CCANNNNNTGG	2 cut(s)	506, 752
PleI	GAGTC	4 cut(s)	175, 490, 1825, 1990
PmaCI	CACGTG	1 cut(s)	719
PmlI	CACGTG	1 cut(s)	719
PpsI	GAGTC	4 cut(s)	175, 490, 1825, 1990
Ppu21I	YACGTR	1 cut(s)	719
PpuMI	RGGWCCY	2 cut(s)	742, 1184
PshAI	GACNNNNGTC	1 cut(s)	940
Psp5II	RGGWCCY	2 cut(s)	742, 1184
Psp6I	CCWGG	6 cut(s)	78, 730, 738, 1112, 1473, 1741
PspCI	CACGTG	1 cut(s)	719
PspGI	CCWGG	6 cut(s)	78, 730, 738, 1112, 1473, 1741
PspN4I	GGNNCC	5 cut(s)	534, 737, 744, 1560, 1740
PspPI	GGNCC	9 cut(s)	395, 455, 509, 532, 742, 1184, 1422, 1471, 1559
PspPPI	RGGWCCY	2 cut(s)	742, 1184
PstI	CTGCAG	2 cut(s)	25, 2026
PstNI	CAGNNNCTG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	159, 1025
RruI	TCGCGA	1 cut(s)	1063
RsaI	GTAC	8 cut(s)	293, 365, 737, 768, 955, 986, 1302, 1589
RsaNI	GTAC	8 cut(s)	292, 364, 736, 767, 954, 985, 1301, 1588
RseI	CAYNNNNRTG	2 cut(s)	375, 1053
SalI	GTCGAC	1 cut(s)	190
SaqAI	TTAA	6 cut(s)	114, 1166, 1572, 1641, 1731, 1749
Sau3AI	GATC	7 cut(s)	25, 159, 169, 205, 1025, 1755, 2033
Sau96I	GGNCC	9 cut(s)	395, 455, 509, 532, 742, 1184, 1422, 1471, 1559
ScaI	AGTACT	2 cut(s)	293, 1589
SchI	GAGTC	4 cut(s)	175, 490, 1826, 1991
ScrFI	CCNGG	7 cut(s)	80, 334, 732, 740, 1114, 1475, 1743
SfaNI	GCATC	3 cut(s)	781, 1342, 1413
SfcI	CTRYAG	2 cut(s)	21, 2022
Sfr274I	CTCGAG	1 cut(s)	295
SinI	GGWCC	3 cut(s)	455, 742, 1184
SlaI	CTCGAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	2 cut(s)	375, 1053
SmlI	CTYRAG	3 cut(s)	295, 960, 1722
SmoI	CTYRAG	3 cut(s)	295, 960, 1722
SphI	GCATGC	1 cut(s)	2003
SsiI	CCGC	5 cut(s)	476, 491, 938, 1488, 1822
SspI	AATATT	1 cut(s)	1764
SspMI	CTAG	2 cut(s)	1227, 2122
StyD4I	CCNGG	7 cut(s)	78, 332, 730, 738, 1112, 1473, 1741
StyI	CCWWGG	2 cut(s)	370, 782
TaaI	ACNGT	8 cut(s)	10, 189, 390, 766, 899, 1021, 1658, 2117
TaiI	ACGT	5 cut(s)	721, 772, 1123, 1257, 1650
TaqI	TCGA	5 cut(s)	191, 296, 656, 857, 1902
TaqII	GACCGA	1 cut(s)	1504
TatI	WGTACW	2 cut(s)	291, 1587
TauI	GCSGC	2 cut(s)	493, 1491
TfiI	GAWTC	5 cut(s)	62, 134, 307, 886, 1058
Tru1I	TTAA	6 cut(s)	114, 1166, 1572, 1641, 1731, 1749
Tru9I	TTAA	6 cut(s)	114, 1166, 1572, 1641, 1731, 1749
TscAI	CASTG	3 cut(s)	192, 511, 1531
TseFI	GTSAC	3 cut(s)	178, 1702, 1921
Tsp45I	GTSAC	3 cut(s)	178, 1702, 1921
TspDTI	ATGAA	9 cut(s)	190, 641, 681, 904, 986, 1185, 1354, 1442, 1941
TspRI	CASTG	3 cut(s)	192, 511, 1531
Van91I	CCANNNNNTGG	2 cut(s)	506, 752
VpaK11BI	GGWCC	3 cut(s)	455, 742, 1184
XapI	RAATTY	7 cut(s)	84, 603, 870, 904, 1358, 1579, 1948
XceI	RCATGY	3 cut(s)	985, 1791, 2003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	2 cut(s)	1227, 2122
ZrmI	AGTACT	2 cut(s)	293, 1589
Zsp2I	ATGCAT	1 cut(s)	1793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.