Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Forward (+)

79435677 .. 79440045

Gene Structure 4369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0596300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1911 bp

ATGGCTACCGTCGCTTCACTTCCGCCGCCTGCCGATCCTTCAGACTTGCTGCAGAATTTGTCATTGGATTCTCAGGCCACGGAGGCCAAAATTTCTGAGCCCGCCAAGAAGGCCAATGCTGTGACTACTAAGCTCCAGTCAACTGACCGGACTAGGACTACCACCCCATCACTGAAGGATTCAACCATGCCCTATCACCCTAATGGCTACGCCTCTTCTGCCTATTACTATGGAGGATATGGTGGACTTGAGTGGGGCAACAATATGAATTCTGTTGTCTATGGTTATGGTTATGCACCCTATAACACATATTCAACAGCAGGGTCTCCAACTGTGGGAAGTGGTCAGCTATATGAACAGCAGTATCAATATCCTCCCTATTTTAAGCAGCTGACTCCTAAAAGTGGTACACCCTACATGCCTAATTCAGCTGTTCCTTCCAAGGGGGGTGTTTCCACCACTAAGGATGCTGACCAAAAGTCCTCACCGGTAGGAACAGCTAATGGGATATCTAATGGTATTTTGTCCAGTGTGGGGCTGAAGGAAAATAATCTTTCAGACTTCTCCAAATATCAAAACTCATCTCTGAATGTAAAGGGTTCCTATGAGGGATACCCTGATGCAGTTTATGGTTTTGATGGTTTGATGTCTCCCATACCATGGTTAGAAGGGTCAACGTTTTCAAATGGACAGGCCAAGGGGATGACCGGAAATACAGTCAACAGAACTCCGTCTTCTAAGAATCAGATTTCCCGACCAAATTCTCCATACATGGGTTTGCTGCCAAGGTTGGGGTACGGTTTGGATACAGCTCGTGGACTTAGTGGGATGTATGCCAACGATTTATATGGTCATAACTGGAACACATATGGACTTGGTATGGGGTTTGGATCCAATAGTTTTGGTATGGCAAGAAATGGATATGGGTGGACCTCTCTCCAAAACAAGTGTAAGTCTAGGGGGCGTGGCAGCACCTTTCGCTATGGTAACCAGGACATAGATGGGTTGGAGGAGTTGAACAAAGGACCTAGAGGTAAGAGTTATAAAGCCGGGGTCAGTGTGGCGTTGAATAAAGCTAATGATGAGAAGGATTCAACTAGCACCATTCCAGAGGGGGAGCAGCACTCCGGAGCAGATATCATTGATAATTACTCAGATGCTAAGTTCTTCATTATAAAGTCATATAGTGAGGATGACGTTCATAAGAGTGTTAAGTATAATGTCTGGGCCAGCACACCAAATGGAAACAAGAAACTTAATGCCGCATACCAGGAGGCTCAGGAGAAAGCTAGTGGCTGCCCTGTATTTCTGCTCTTCTCGGTGAATGCTAGTGGTCAATTCGTTGGCCTAGCGGAGATGGTGGGGCCGGTTGATTTTGACAAGAATGTGGAGTATTGGCAACAAGACAAGTGGACTGGTTGTTTCCCTGTTAAGTGGCACATTGTAAAGGACGTACCCAACAGTTTGCTAAAGCACATTACCCTTGAAAACAATGAAAACAAACCTGTCACAAACAGTAGGGACACTCAAGAGGTCAAGTTAGAGGAGGGGCTTAAATTGATCAAACTATTCAAGGATCATTCTGGTAGAACATGCCTTTTGGATGATTTTGAGTTCTATGAAGATCGGCAAAAGACAATTGAGGAAGTTAAAGCAAAGCGGCAGACTCGGAAGAAGAAGGTATTGGAGGAGAAGCCAACTGATGGAAGAAATGATGGGACAGAAGAGGCACTAGTCAAATCACCAGAGTCATTGGGAACTGCATTGGATTTGGTTAAGGAACCAACACCAATTGATCAGAGTGATGAACAAGTGAAGCCTTTGGAGAATGGCTCAGTTGCAGAAGCTGGAGATGACGTGAAGGGTCCACAACCAGTTGTTGAAGAGTCTGAGGTGATTGTAACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

636

Amino Acids

69.46

Weight (kDa)

5.74

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YTH	PF04146	387 - 525	1.3e-49	YT521-B-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1044, 1175
AccB7I	CCANNNNNTGG	2 cut(s)	660, 1703
AccIII	TCCGGA	1 cut(s)	1127
AciI	CCGC	6 cut(s)	23, 26, 102, 1263, 1352, 1660
AclI	AACGTT	1 cut(s)	677
AclWI	GGATC	4 cut(s)	29, 885, 898, 1584
AcsI	RAATTY	4 cut(s)	55, 90, 268, 760
AcuI	CTGAAG	3 cut(s)	24, 194, 560
AfaI	GTAC	3 cut(s)	409, 797, 1455
AfiI	CCNNNNNNNGG	8 cut(s)	335, 404, 443, 534, 660, 773, 791, 1703
AgeI	ACCGGT	1 cut(s)	487
AgsI	TTSAA	9 cut(s)	183, 315, 684, 1018, 1069, 1095, 1487, 1573, 1883
AhdI	GACNNNNNGTC	1 cut(s)	478
AhlI	ACTAGT	1 cut(s)	1732
AjiI	CACGTC	1 cut(s)	1858
AjnI	CCWGG	2 cut(s)	990, 1269
AjuI	GAANNNNNNNTTGG	4 cut(s)	47, 79, 1667, 1699
AluBI	AGCT	9 cut(s)	133, 349, 391, 431, 500, 812, 1076, 1289, 1847
AluI	AGCT	9 cut(s)	133, 349, 391, 431, 500, 812, 1076, 1289, 1847
Alw26I	GTCTC	2 cut(s)	330, 654
AlwI	GGATC	4 cut(s)	29, 885, 898, 1584
AlwNI	CAGNNNCTG	1 cut(s)	1847
Aor13HI	TCCGGA	1 cut(s)	1127
AoxI	GGCC	7 cut(s)	75, 84, 111, 693, 1227, 1345, 1364
ApeKI	GCWGC	6 cut(s)	49, 388, 781, 969, 1120, 1296
ApoI	RAATTY	4 cut(s)	55, 90, 268, 760
AsiGI	ACCGGT	1 cut(s)	487
AspS9I	GGNCC	5 cut(s)	930, 1025, 1227, 1364, 1865
AsuC2I	CCSGG	1 cut(s)	1051
AsuHPI	GGTGA	5 cut(s)	188, 477, 1333, 1734, 1906
AvaII	GGWCC	3 cut(s)	930, 1025, 1865
BaeI	ACNNNNGTAYC	2 cut(s)	347, 380
BamHI	GGATCC	1 cut(s)	890
BanII	GRGCYC	1 cut(s)	102
BauI	CACGAG	1 cut(s)	813
BbsI	GAAGAC	1 cut(s)	726
BbvI	GCAGC	6 cut(s)	36, 400, 768, 981, 1132, 1283
BccI	CCATC	6 cut(s)	175, 632, 995, 1351, 1697, 1709
BciT130I	CCWGG	2 cut(s)	992, 1271
BciVI	GTATCC	2 cut(s)	605, 799
BclI	TGATCA	2 cut(s)	1560, 1795
BcnI	CCSGG	1 cut(s)	1051
BcoDI	GTCTC	2 cut(s)	330, 654
BcuI	ACTAGT	1 cut(s)	1732
BfaI	CTAG	8 cut(s)	153, 957, 1029, 1098, 1290, 1329, 1349, 1733
BfmI	CTRYAG	1 cut(s)	50
BfuI	GTATCC	2 cut(s)	605, 799
BglI	GCCNNNNNGGC	2 cut(s)	83, 110
BisI	GCNGC	9 cut(s)	26, 50, 389, 782, 970, 1121, 1263, 1297, 1661
BlsI	GCNGC	9 cut(s)	27, 51, 390, 783, 971, 1122, 1264, 1298, 1662
Bme1390I	CCNGG	3 cut(s)	992, 1051, 1271
Bme18I	GGWCC	3 cut(s)	930, 1025, 1865
BmeRI	GACNNNNNGTC	1 cut(s)	478
BmgBI	CACGTC	1 cut(s)	1858
BmgT120I	GGNCC	5 cut(s)	930, 1025, 1227, 1364, 1865
BmiI	GGNNCC	5 cut(s)	601, 892, 1365, 1782, 1866
BmrFI	CCNGG	3 cut(s)	992, 1051, 1271
BmsI	GCATC	3 cut(s)	457, 610, 1147
BpiI	GAAGAC	1 cut(s)	726
BplI	GAGNNNNNCTC	4 cut(s)	1109, 1141, 1817, 1849
BpmI	CTGGAG	2 cut(s)	119, 1869
Bpu10I	CCTNAGC	1 cut(s)	1278
BpuEI	CTTGAG	2 cut(s)	269, 1512
BpuMI	CCSGG	1 cut(s)	1051
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	6 cut(s)	78, 441, 659, 696, 785, 1050
BsaWI	WCCGGW	4 cut(s)	147, 487, 707, 1127
BsaXI	ACNNNNNCTCC	2 cut(s)	1842, 1872
Bsc4I	CCNNNNNNNGG	8 cut(s)	335, 404, 443, 534, 660, 773, 791, 1703
Bse118I	RCCGGY	2 cut(s)	487, 1366
Bse1I	ACTGG	5 cut(s)	136, 528, 863, 1420, 1874
BseAI	TCCGGA	1 cut(s)	1127
BseBI	CCWGG	2 cut(s)	992, 1271
BseDI	CCNNGG	6 cut(s)	78, 441, 659, 696, 785, 1050
BseGI	GGATG	5 cut(s)	472, 708, 834, 1198, 1609
BseLI	CCNNNNNNNGG	8 cut(s)	335, 404, 443, 534, 660, 773, 791, 1703
BseMII	CTCAG	6 cut(s)	86, 87, 1167, 1292, 1848, 1881
BseNI	ACTGG	5 cut(s)	136, 528, 863, 1420, 1874
BseRI	GAGGAG	3 cut(s)	1025, 1559, 1703
BseXI	GCAGC	6 cut(s)	36, 400, 768, 981, 1132, 1283
BshFI	GGCC	7 cut(s)	77, 86, 113, 695, 1229, 1347, 1366
BshTI	ACCGGT	1 cut(s)	487
BsiSI	CCGG	6 cut(s)	148, 488, 708, 1050, 1128, 1367
BslFI	GGGAC	2 cut(s)	1535, 1732
BslI	CCNNNNNNNGG	8 cut(s)	335, 404, 443, 534, 660, 773, 791, 1703
BsmAI	GTCTC	2 cut(s)	330, 654
BsmFI	GGGAC	2 cut(s)	1535, 1732
BsmI	GAATGC	1 cut(s)	1330
BsnI	GGCC	7 cut(s)	77, 86, 113, 695, 1229, 1347, 1366
Bso31I	GGTCTC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp13I	TCCGGA	1 cut(s)	1127
Bsp143I	GATC	6 cut(s)	34, 890, 1560, 1576, 1624, 1795
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	6 cut(s)	23, 26, 102, 1263, 1352, 1660
BspANI	GGCC	7 cut(s)	77, 86, 113, 695, 1229, 1347, 1366
BspCNI	CTCAG	6 cut(s)	85, 88, 1166, 1291, 1847, 1882
BspEI	TCCGGA	1 cut(s)	1127
BspLI	GGNNCC	5 cut(s)	601, 892, 1365, 1782, 1866
BspMAI	CTGCAG	1 cut(s)	54
BspPI	GGATC	4 cut(s)	29, 885, 898, 1584
BspQI	GCTCTTC	1 cut(s)	1319
BspTNI	GGTCTC	1 cut(s)	330
BsrFI	RCCGGY	2 cut(s)	487, 1366
BsrI	ACTGG	5 cut(s)	136, 528, 863, 1420, 1874
BssAI	RCCGGY	2 cut(s)	487, 1366
BssECI	CCNNGG	6 cut(s)	78, 441, 659, 696, 785, 1050
BssMI	GATC	6 cut(s)	34, 890, 1560, 1576, 1624, 1795
BssSI	CACGAG	1 cut(s)	813
BssT1I	CCWWGG	4 cut(s)	441, 659, 696, 785
Bst2BI	CACGAG	1 cut(s)	813
Bst2UI	CCWGG	2 cut(s)	992, 1271
Bst4CI	ACNGT	6 cut(s)	10, 334, 718, 800, 1463, 1517
Bst6I	CTCTTC	4 cut(s)	220, 1319, 1719, 1878
BstC8I	GCNNGC	3 cut(s)	30, 102, 1231
BstDSI	CCRYGG	2 cut(s)	78, 659
BstEII	GGTNACC	1 cut(s)	986
BstF5I	GGATG	5 cut(s)	472, 708, 834, 1198, 1609
BstKTI	GATC	6 cut(s)	37, 893, 1563, 1579, 1627, 1798
BstMAI	GTCTC	2 cut(s)	330, 654
BstMBI	GATC	6 cut(s)	34, 890, 1560, 1576, 1624, 1795
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 83, 110, 218, 978
BstNI	CCWGG	2 cut(s)	992, 1271
BstNSI	RCATGY	2 cut(s)	421, 1596
BstPI	GGTNACC	1 cut(s)	986
BstSCI	CCNGG	3 cut(s)	990, 1049, 1269
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	6 cut(s)	36, 400, 768, 981, 1132, 1283
BstV2I	GAAGAC	1 cut(s)	726
BstX2I	RGATCY	1 cut(s)	890
BstYI	RGATCY	1 cut(s)	890
BsuI	GTATCC	2 cut(s)	605, 799
BsuRI	GGCC	7 cut(s)	77, 86, 113, 695, 1229, 1347, 1366
BtgI	CCRYGG	2 cut(s)	78, 659
BtrI	CACGTC	1 cut(s)	1858
BtsCI	GGATG	5 cut(s)	472, 708, 834, 1198, 1609
BtsIMutI	CAGTG	3 cut(s)	170, 535, 1063
Cac8I	GCNNGC	3 cut(s)	30, 102, 1231
CaiI	CAGNNNCTG	1 cut(s)	1847
Cfr10I	RCCGGY	2 cut(s)	487, 1366
Cfr13I	GGNCC	5 cut(s)	930, 1025, 1227, 1364, 1865
Csp6I	GTAC	3 cut(s)	408, 796, 1454
CspAI	ACCGGT	1 cut(s)	487
CspCI	CAANNNNNGTGG	2 cut(s)	1391, 1426
CviAII	CATG	5 cut(s)	187, 418, 660, 772, 1593
CviQI	GTAC	3 cut(s)	408, 796, 1454
DpnI	GATC	6 cut(s)	36, 892, 1562, 1578, 1626, 1797
DpnII	GATC	6 cut(s)	34, 890, 1560, 1576, 1624, 1795
DriI	GACNNNNNGTC	1 cut(s)	478
Eam1104I	CTCTTC	4 cut(s)	220, 1319, 1719, 1878
Eam1105I	GACNNNNNGTC	1 cut(s)	478
EarI	CTCTTC	4 cut(s)	220, 1319, 1719, 1878
EciI	GGCGGA	1 cut(s)	12
Eco130I	CCWWGG	4 cut(s)	441, 659, 696, 785
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	330
Eco32I	GATATC	2 cut(s)	510, 1138
Eco47I	GGWCC	3 cut(s)	930, 1025, 1865
Eco57I	CTGAAG	3 cut(s)	24, 194, 560
Eco91I	GGTNACC	1 cut(s)	986
EcoO109I	RGGNCCY	1 cut(s)	1025
EcoO65I	GGTNACC	1 cut(s)	986
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	990, 1269
EcoRV	GATATC	2 cut(s)	510, 1138
EcoT14I	CCWWGG	4 cut(s)	441, 659, 696, 785
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	4 cut(s)	441, 659, 696, 785
FaeI	CATG	5 cut(s)	190, 421, 663, 775, 1596
FaqI	GGGAC	2 cut(s)	1535, 1732
FatI	CATG	5 cut(s)	186, 417, 659, 771, 1592
FauI	CCCGC	1 cut(s)	109
FauNDI	CATATG	1 cut(s)	868
FbaI	TGATCA	2 cut(s)	1560, 1795
Fnu4HI	GCNGC	9 cut(s)	26, 50, 389, 782, 970, 1121, 1263, 1297, 1661
FokI	GGATG	5 cut(s)	479, 715, 841, 1205, 1616
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	9 cut(s)	26, 50, 389, 782, 970, 1121, 1263, 1297, 1661
FspBI	CTAG	8 cut(s)	153, 957, 1029, 1098, 1290, 1329, 1349, 1733
GluI	GCNGC	9 cut(s)	26, 50, 389, 782, 970, 1121, 1263, 1297, 1661
GsuI	CTGGAG	2 cut(s)	119, 1869
HaeIII	GGCC	7 cut(s)	77, 86, 113, 695, 1229, 1347, 1366
HapII	CCGG	6 cut(s)	148, 488, 708, 1050, 1128, 1367
Hin1II	CATG	5 cut(s)	190, 421, 663, 775, 1596
HincII	GTYRAC	3 cut(s)	141, 675, 721
HindII	GTYRAC	3 cut(s)	141, 675, 721
HinfI	GANTC	8 cut(s)	68, 179, 394, 742, 1091, 1666, 1748, 1886
HpaII	CCGG	6 cut(s)	148, 488, 708, 1050, 1128, 1367
HphI	GGTGA	5 cut(s)	188, 477, 1333, 1734, 1906
Hpy166II	GTNNAC	9 cut(s)	141, 245, 410, 675, 721, 818, 930, 1413, 1868
Hpy188I	TCNGA	9 cut(s)	43, 97, 559, 588, 747, 1156, 1671, 1800, 1891
Hpy188III	TCNNGA	5 cut(s)	753, 1109, 1128, 1280, 1529
Hpy8I	GTNNAC	9 cut(s)	141, 245, 410, 675, 721, 818, 930, 1413, 1868
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	9 cut(s)	48, 103, 169, 447, 535, 662, 1081, 1672, 1855
HpyCH4III	ACNGT	6 cut(s)	10, 334, 718, 800, 1463, 1517
HpyCH4IV	ACGT	4 cut(s)	677, 1197, 1452, 1857
HpyCH4V	TGCA	5 cut(s)	52, 296, 623, 1763, 1841
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 83, 110, 218, 978
HpySE526I	ACGT	4 cut(s)	677, 1197, 1452, 1857
Hsp92II	CATG	5 cut(s)	190, 421, 663, 775, 1596
Kpn2I	TCCGGA	1 cut(s)	1127
Ksp22I	TGATCA	2 cut(s)	1560, 1795
Kzo9I	GATC	6 cut(s)	34, 890, 1560, 1576, 1624, 1795
LguI	GCTCTTC	1 cut(s)	1319
LmnI	GCTCC	3 cut(s)	138, 1117, 1130
Lsp1109I	GCAGC	6 cut(s)	36, 400, 768, 981, 1132, 1283
LweI	GCATC	3 cut(s)	457, 610, 1147
MaeI	CTAG	8 cut(s)	153, 957, 1029, 1098, 1290, 1329, 1349, 1733
MaeII	ACGT	4 cut(s)	677, 1197, 1452, 1857
MaeIII	GTNAC	4 cut(s)	121, 986, 1507, 1900
MalI	GATC	6 cut(s)	36, 892, 1562, 1578, 1626, 1797
MboI	GATC	6 cut(s)	34, 890, 1560, 1576, 1624, 1795
MfeI	CAATTG	2 cut(s)	1638, 1791
MflI	RGATCY	1 cut(s)	890
MhlI	GDGCHC	1 cut(s)	102
MlyI	GAGTC	4 cut(s)	388, 1660, 1757, 1895
MmeI	TCCRAC	2 cut(s)	353, 987
MroI	TCCGGA	1 cut(s)	1127
MseI	TTAA	7 cut(s)	384, 1212, 1257, 1431, 1554, 1650, 1776
MslI	CAYNNNNRTG	2 cut(s)	201, 1206
MspA1I	CMGCKG	2 cut(s)	391, 431
MspI	CCGG	6 cut(s)	148, 488, 708, 1050, 1128, 1367
MspR9I	CCNGG	3 cut(s)	992, 1051, 1271
MunI	CAATTG	2 cut(s)	1638, 1791
Mva1269I	GAATGC	1 cut(s)	1330
MvaI	CCWGG	2 cut(s)	992, 1271
MwoI	GCNNNNNNNGC	5 cut(s)	11, 83, 110, 218, 978
NciI	CCSGG	1 cut(s)	1051
NcoI	CCATGG	1 cut(s)	659
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	6 cut(s)	34, 890, 1560, 1576, 1624, 1795
NlaIII	CATG	5 cut(s)	190, 421, 663, 775, 1596
NlaIV	GGNNCC	5 cut(s)	601, 892, 1365, 1782, 1866
NmuCI	GTSAC	2 cut(s)	121, 1507
NspI	RCATGY	2 cut(s)	421, 1596
PciSI	GCTCTTC	1 cut(s)	1319
PctI	GAATGC	1 cut(s)	1330
PfeI	GAWTC	4 cut(s)	68, 179, 742, 1091
PflMI	CCANNNNNTGG	2 cut(s)	660, 1703
PinAI	ACCGGT	1 cut(s)	487
PkrI	GCNGC	9 cut(s)	27, 51, 390, 783, 971, 1122, 1264, 1298, 1662
PleI	GAGTC	4 cut(s)	388, 1660, 1756, 1894
PpsI	GAGTC	4 cut(s)	388, 1660, 1756, 1894
PpuMI	RGGWCCY	1 cut(s)	1025
PsiI	TTATAA	2 cut(s)	1044, 1175
Psp1406I	AACGTT	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	1025
Psp6I	CCWGG	2 cut(s)	990, 1269
PspEI	GGTNACC	1 cut(s)	986
PspGI	CCWGG	2 cut(s)	990, 1269
PspN4I	GGNNCC	5 cut(s)	601, 892, 1365, 1782, 1866
PspPI	GGNCC	5 cut(s)	930, 1025, 1227, 1364, 1865
PspPPI	RGGWCCY	1 cut(s)	1025
PstI	CTGCAG	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	1847
PsuI	RGATCY	1 cut(s)	890
PvuII	CAGCTG	2 cut(s)	391, 431
RsaI	GTAC	3 cut(s)	409, 797, 1455
RsaNI	GTAC	3 cut(s)	408, 796, 1454
RseI	CAYNNNNRTG	2 cut(s)	201, 1206
SapI	GCTCTTC	1 cut(s)	1319
SaqAI	TTAA	7 cut(s)	384, 1212, 1257, 1431, 1554, 1650, 1776
SatI	GCNGC	9 cut(s)	26, 50, 389, 782, 970, 1121, 1263, 1297, 1661
Sau3AI	GATC	6 cut(s)	34, 890, 1560, 1576, 1624, 1795
Sau96I	GGNCC	5 cut(s)	930, 1025, 1227, 1364, 1865
SchI	GAGTC	4 cut(s)	388, 1660, 1757, 1895
ScrFI	CCNGG	3 cut(s)	992, 1051, 1271
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	3 cut(s)	457, 610, 1147
SfcI	CTRYAG	1 cut(s)	50
SfiI	GGCCNNNNNGGCC	1 cut(s)	83
SinI	GGWCC	3 cut(s)	930, 1025, 1865
SmiMI	CAYNNNNRTG	2 cut(s)	201, 1206
SmlI	CTYRAG	2 cut(s)	248, 1527
SmoI	CTYRAG	2 cut(s)	248, 1527
SpeI	ACTAGT	1 cut(s)	1732
SsiI	CCGC	6 cut(s)	23, 26, 102, 1263, 1352, 1660
SspMI	CTAG	8 cut(s)	153, 957, 1029, 1098, 1290, 1329, 1349, 1733
StyD4I	CCNGG	3 cut(s)	990, 1049, 1269
StyI	CCWWGG	4 cut(s)	441, 659, 696, 785
TaaI	ACNGT	6 cut(s)	10, 334, 718, 800, 1463, 1517
TaiI	ACGT	4 cut(s)	680, 1200, 1455, 1860
TauI	GCSGC	3 cut(s)	28, 1265, 1663
TfiI	GAWTC	4 cut(s)	68, 179, 742, 1091
Tru1I	TTAA	7 cut(s)	384, 1212, 1257, 1431, 1554, 1650, 1776
Tru9I	TTAA	7 cut(s)	384, 1212, 1257, 1431, 1554, 1650, 1776
TscAI	CASTG	3 cut(s)	177, 535, 1063
TseFI	GTSAC	2 cut(s)	121, 1507
TseI	GCWGC	6 cut(s)	49, 388, 781, 969, 1120, 1296
Tsp45I	GTSAC	2 cut(s)	121, 1507
TspDTI	ATGAA	7 cut(s)	281, 369, 1159, 1190, 1509, 1635, 1821
TspGWI	ACGGA	2 cut(s)	95, 720
TspRI	CASTG	3 cut(s)	177, 535, 1063
Van91I	CCANNNNNTGG	2 cut(s)	660, 1703
VpaK11BI	GGWCC	3 cut(s)	930, 1025, 1865
XapI	RAATTY	4 cut(s)	55, 90, 268, 760
XceI	RCATGY	2 cut(s)	421, 1596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	998
XspI	CTAG	8 cut(s)	153, 957, 1029, 1098, 1290, 1329, 1349, 1733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.