Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Forward (+)

12345383 .. 12347351

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG098800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTGAGCATGGCGTGGCCAATCATATTTGTTTTTCCACCACCAGCTTCTGTGTTCGTCACAGCCATGTCAGTGATCAGCTTCGCAGGGTTAGCTAATGCCGGGTTCTCGGAGGTCAGAGGAAAACACCTCCAGTATTCCAAGTTCTGGAAGAATAATAGCAATCAATCCGATTCTCAAACATCAAAGCAAATTTACATATCTGGTAGAACAGGCATGCAAATTTTGTATACTCCCGCATTTCTCGCTGGTCTCACATCCTTGGTGTTCTTTCCCCATAACGATGATATCAGATATCTATTGCTTTCTTCAGCTCTCACCATTCATTTCCTCAAACGACTTTTGGAGGTTCAATTTGTTCACAAGTACAGTGGAGGGATGGCGCTCGATTCTGCGATTCCTATCTCTCTCAGTTACTTCATGTTTACTGTGACTGCGATTTACGCTCAGCACCTTACTATAACCCAAGGGCTACCAGAGCCACAAATTGATTTGAAGTACCCTGGAATTCTGTTGTTTCTACTTGGGATATCTGGCAATTTCTACCATCACTACCTACTCTCCCGAATGAGATCATCATCCTCTTCGTCTCCGTCAAACTCAAACAGCAATGACGATAAGGATTATAAGATTCCAAGGGGTGGAATGTTTGAGCTAGTGGTATGCCCTCACTATCTCTTTGAAATCATAGGATTTGTAGGGTTCTCTTTTATTTCTCAGACCTTGTATGCATTCGCCTTCATGGCCGGAACAGCATTCTATTTAACTGGTAGGAGCTATGCTACTAGGAGATGGTATCTTTCTAAGTTTAAACATTTTCCCCAAAATGTCAAGGCTCTCATTCCATATCTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

285

Amino Acids

32.21

Weight (kDa)

9.5

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	149 - 285	3.3e-24	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AccB7I	CCANNNNNTGG	2 cut(s)	147, 641
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	1 cut(s)	237
AcoI	YGGCCR	2 cut(s)	17, 744
AcsI	RAATTY	3 cut(s)	192, 222, 507
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	2 cut(s)	368, 500
AfiI	CCNNNNNNNGG	2 cut(s)	147, 641
AgsI	TTSAA	3 cut(s)	353, 496, 683
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	6 cut(s)	47, 81, 95, 314, 655, 777
AluI	AGCT	6 cut(s)	47, 81, 95, 314, 655, 777
Alw26I	GTCTC	2 cut(s)	257, 594
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	2 cut(s)	17, 744
ApoI	RAATTY	3 cut(s)	192, 222, 507
AspLEI	GCGC	1 cut(s)	385
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	16, 310
BalI	TGGCCA	1 cut(s)	19
BccI	CCATC	3 cut(s)	373, 555, 786
BciT130I	CCWGG	1 cut(s)	504
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	257, 594
BfaI	CTAG	2 cut(s)	656, 786
BfoI	RGCGCY	1 cut(s)	386
BglI	GCCNNNNNGGC	1 cut(s)	743
BlpI	GCTNAGC	1 cut(s)	447
Bme1390I	CCNGG	2 cut(s)	103, 504
BmrFI	CCNGG	2 cut(s)	103, 504
BpmI	CTGGAG	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	103
BsaBI	GATNNNNATC	2 cut(s)	401, 577
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	4 cut(s)	261, 466, 502, 635
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 641
Bse1I	ACTGG	2 cut(s)	133, 772
Bse3DI	GCAATG	1 cut(s)	616
Bse8I	GATNNNNATC	2 cut(s)	401, 577
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	4 cut(s)	261, 466, 502, 635
BseGI	GGATG	3 cut(s)	257, 384, 578
BseJI	GATNNNNATC	2 cut(s)	401, 577
BseLI	CCNNNNNNNGG	2 cut(s)	147, 641
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	3 cut(s)	424, 461, 731
BseNI	ACTGG	2 cut(s)	133, 772
BshFI	GGCC	2 cut(s)	19, 746
BsiSI	CCGG	2 cut(s)	102, 747
BslI	CCNNNNNNNGG	2 cut(s)	147, 641
BsmAI	GTCTC	2 cut(s)	257, 594
BsmBI	CGTCTC	1 cut(s)	594
BsmI	GAATGC	2 cut(s)	731, 755
BsnI	GGCC	2 cut(s)	19, 746
Bso31I	GGTCTC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	75, 572
Bsp1720I	GCTNAGC	1 cut(s)	447
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	19, 746
BspCNI	CTCAG	3 cut(s)	423, 460, 730
BspTNI	GGTCTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	133, 772
BssECI	CCNNGG	4 cut(s)	261, 466, 502, 635
BssMI	GATC	2 cut(s)	75, 572
BssNAI	GTATAC	1 cut(s)	231
BssT1I	CCWWGG	3 cut(s)	261, 466, 635
Bst1107I	GTATAC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	2 cut(s)	371, 430
Bst6I	CTCTTC	1 cut(s)	589
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	4 cut(s)	410, 447, 717, 804
BstF5I	GGATG	3 cut(s)	257, 384, 578
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	78, 575
BstMAI	GTCTC	2 cut(s)	257, 594
BstMBI	GATC	2 cut(s)	75, 572
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 245, 443, 478, 743, 752
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	101, 502
BstZ17I	GTATAC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	19, 746
BtsCI	GGATG	3 cut(s)	257, 384, 578
BtsIMutI	CAGTG	2 cut(s)	78, 376
Cac8I	GCNNGC	1 cut(s)	218
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	385
Csp6I	GTAC	2 cut(s)	367, 499
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	5 cut(s)	10, 67, 217, 421, 742
CviQI	GTAC	2 cut(s)	367, 499
DdeI	CTNAG	4 cut(s)	410, 447, 717, 804
DpnI	GATC	2 cut(s)	77, 574
DpnII	GATC	2 cut(s)	75, 572
DraI	TTTAAA	1 cut(s)	811
EaeI	YGGCCR	2 cut(s)	17, 744
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco130I	CCWWGG	3 cut(s)	261, 466, 635
Eco31I	GGTCTC	1 cut(s)	257
Eco32I	GATATC	3 cut(s)	289, 296, 531
Eco57I	CTGAAG	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	502
EcoRV	GATATC	3 cut(s)	289, 296, 531
EcoT14I	CCWWGG	3 cut(s)	261, 466, 635
EcoT22I	ATGCAT	1 cut(s)	733
ErhI	CCWWGG	3 cut(s)	261, 466, 635
Esp3I	CGTCTC	1 cut(s)	594
FaeI	CATG	5 cut(s)	13, 70, 220, 424, 745
FatI	CATG	5 cut(s)	9, 66, 216, 420, 741
FauI	CCCGC	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	230
FokI	GGATG	3 cut(s)	244, 391, 565
FspBI	CTAG	2 cut(s)	656, 786
GlaI	GCGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	19, 746
HapII	CCGG	2 cut(s)	102, 747
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	5 cut(s)	13, 70, 220, 424, 745
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HinfI	GANTC	4 cut(s)	173, 389, 397, 631
HpaII	CCGG	2 cut(s)	102, 747
HphI	GGTGA	2 cut(s)	16, 310
Hpy166II	GTNNAC	3 cut(s)	231, 361, 426
Hpy188I	TCNGA	5 cut(s)	112, 119, 172, 293, 720
Hpy188III	TCNNGA	2 cut(s)	148, 564
Hpy8I	GTNNAC	3 cut(s)	231, 361, 426
HpyAV	CCTTC	1 cut(s)	748
HpyCH4III	ACNGT	2 cut(s)	371, 430
HpyCH4V	TGCA	2 cut(s)	220, 731
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 245, 443, 478, 743, 752
HpyF3I	CTNAG	4 cut(s)	410, 447, 717, 804
Hsp92II	CATG	5 cut(s)	13, 70, 220, 424, 745
HspAI	GCGC	1 cut(s)	383
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	75, 572
LmnI	GCTCC	1 cut(s)	774
MaeI	CTAG	2 cut(s)	656, 786
MaeIII	GTNAC	3 cut(s)	58, 413, 430
MalI	GATC	2 cut(s)	77, 574
MboI	GATC	2 cut(s)	75, 572
MboII	GAAGA	3 cut(s)	163, 300, 576
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	6 cut(s)	192, 222, 353, 486, 507, 538
MluNI	TGGCCA	1 cut(s)	19
MnlI	CCTC	8 cut(s)	106, 113, 140, 340, 341, 368, 592, 678
Mox20I	TGGCCA	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	733
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	2 cut(s)	764, 810
MslI	CAYNNNNRTG	3 cut(s)	65, 71, 282
Msp20I	TGGCCA	1 cut(s)	19
MspI	CCGG	2 cut(s)	102, 747
MspR9I	CCNGG	2 cut(s)	103, 504
MssI	GTTTAAAC	1 cut(s)	811
Mva1269I	GAATGC	2 cut(s)	731, 755
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	6 cut(s)	92, 245, 443, 478, 743, 752
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	75, 572
NlaIII	CATG	5 cut(s)	13, 70, 220, 424, 745
NmuCI	GTSAC	2 cut(s)	58, 430
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	1 cut(s)	220
PaeI	GCATGC	1 cut(s)	220
PctI	GAATGC	2 cut(s)	731, 755
PfeI	GAWTC	4 cut(s)	173, 389, 397, 631
PflMI	CCANNNNNTGG	2 cut(s)	147, 641
PmeI	GTTTAAAC	1 cut(s)	811
PsiI	TTATAA	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	368, 500
RsaNI	GTAC	2 cut(s)	367, 499
RseI	CAYNNNNRTG	3 cut(s)	65, 71, 282
SaqAI	TTAA	2 cut(s)	764, 810
Sau3AI	GATC	2 cut(s)	75, 572
ScrFI	CCNGG	2 cut(s)	103, 504
SmiMI	CAYNNNNRTG	3 cut(s)	65, 71, 282
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	6 cut(s)	192, 222, 353, 486, 507, 538
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	2 cut(s)	656, 786
StyD4I	CCNGG	2 cut(s)	101, 502
StyI	CCWWGG	3 cut(s)	261, 466, 635
TaaI	ACNGT	2 cut(s)	371, 430
TaqI	TCGA	1 cut(s)	387
TasI	AATT	6 cut(s)	192, 222, 353, 486, 507, 538
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	4 cut(s)	173, 389, 397, 631
Tru1I	TTAA	2 cut(s)	764, 810
Tru9I	TTAA	2 cut(s)	764, 810
TscAI	CASTG	2 cut(s)	78, 376
TseFI	GTSAC	2 cut(s)	58, 430
Tsp45I	GTSAC	2 cut(s)	58, 430
TspDTI	ATGAA	3 cut(s)	314, 409, 730
TspGWI	ACGGA	1 cut(s)	582
TspRI	CASTG	2 cut(s)	78, 376
Van91I	CCANNNNNTGG	2 cut(s)	147, 641
XapI	RAATTY	3 cut(s)	192, 222, 507
XceI	RCATGY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	2 cut(s)	656, 786
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.