Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028284.1

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1091

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028284.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggcgtggccaatcatatttgtttttccagcaccagcttctgtgttcgtcacagccatgtcagtgatcagcttcgcagggttagctaatgccgggttctcggaggtcagaggaaaacacctccagtattccaagttccggacgaataatagcaatcaatccgattctcaaaaatcaaagcaaatttacatatctggaagaagaggcatgcaaatcgcttatactcccgcatttcttgctggtctcacatccttggtgttctttccccacaacgatgatatcagatatctattgctctcttcagctctcaccattcatttcctcaaacgacttttggaggttcaatttgttcacaagtacagtggagggatggcgctcgattctgcgattcctatctctctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

134

Amino Acids

14.85

Weight (kDa)

9.91

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	344
AluBI	AGCT	4 cut(s)	38, 72, 86, 305
AluI	AGCT	4 cut(s)	38, 72, 86, 305
Alw26I	GTCTC	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	138
AoxI	GGCC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	376
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	10
BccI	CCATC	1 cut(s)	364
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	392
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	392
BseAI	TCCGGA	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	248, 375
BseJI	GATNNNNATC	1 cut(s)	392
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	93, 139
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	248
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	10
BspEI	TCCGGA	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	2 cut(s)	196, 304
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	248, 375
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 236
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	248, 375
BtsIMutI	CAGTG	2 cut(s)	69, 367
Cac8I	GCNNGC	1 cut(s)	209
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	358
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	2 cut(s)	58, 208
CviJI	RGCY	6 cut(s)	10, 38, 56, 72, 86, 305
CviKI_1	RGCY	6 cut(s)	10, 38, 56, 72, 86, 305
CviQI	GTAC	1 cut(s)	358
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	8
Eam1104I	CTCTTC	2 cut(s)	196, 304
EarI	CTCTTC	2 cut(s)	196, 304
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	248
Eco32I	GATATC	2 cut(s)	280, 287
Eco57I	CTGAAG	1 cut(s)	285
EcoRV	GATATC	2 cut(s)	280, 287
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	61, 211
FaiI	YATR	5 cut(s)	17, 59, 191, 209, 222
FatI	CATG	2 cut(s)	57, 207
FauI	CCCGC	1 cut(s)	235
FbaI	TGATCA	1 cut(s)	66
FokI	GGATG	2 cut(s)	235, 382
GlaI	GCGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	107
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	2 cut(s)	93, 139
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	2 cut(s)	61, 211
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HinfI	GANTC	3 cut(s)	164, 380, 388
HpaII	CCGG	2 cut(s)	93, 139
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	4 cut(s)	103, 110, 163, 284
Hpy188III	TCNNGA	2 cut(s)	139, 195
Hpy8I	GTNNAC	1 cut(s)	352
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 236
Hsp92II	CATG	2 cut(s)	61, 211
HspAI	GCGC	1 cut(s)	374
Kpn2I	TCCGGA	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	66
LpnPI	CCDG	8 cut(s)	42, 48, 63, 106, 137, 152, 180, 225
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	3 cut(s)	210, 213, 291
MlsI	TGGCCA	1 cut(s)	10
MluCI	AATT	2 cut(s)	183, 344
MluNI	TGGCCA	1 cut(s)	10
MnlI	CCTC	7 cut(s)	97, 104, 131, 197, 331, 332, 359
Mox20I	TGGCCA	1 cut(s)	10
MroI	TCCGGA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	10
MslI	CAYNNNNRTG	3 cut(s)	56, 62, 273
Msp20I	TGGCCA	1 cut(s)	10
MspI	CCGG	2 cut(s)	93, 139
MspR9I	CCNGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	83, 236
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	2 cut(s)	61, 211
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	211
PaeI	GCATGC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	164, 380, 388
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
PstNI	CAGNNNCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	3 cut(s)	56, 62, 273
Sau3AI	GATC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	7 cut(s)	40, 74, 88, 108, 123, 307, 342
SmiMI	CAYNNNNRTG	3 cut(s)	56, 62, 273
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	183, 344
SsiI	CCGC	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	1 cut(s)	378
TasI	AATT	2 cut(s)	183, 344
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	3 cut(s)	164, 380, 388
TscAI	CASTG	2 cut(s)	69, 367
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	305
TspRI	CASTG	2 cut(s)	69, 367
XapI	RAATTY	1 cut(s)	183
XceI	RCATGY	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.