Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Forward (+)

12443361 .. 12449538

Gene Structure 6178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG108600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCACTTGATACTGCAATTTTTATCTGTTTCAGTTACTTCACGTCTAGTGCCACCATGATCTACGCTCAGCACCTTACTGTAACCCAAGGGCTACCAGAGCCACAAATTGATTTGAAGTACCCTGGAATTCTGTTGTGTCTACTTGGGATATCTGGCAATTTCTACCATCACTACCTACTTTCCCGAATGAGATCATCATCCTCTTCGTCTCCGTCGAAGATAAAAAGCAATGATGATAAGGATTATAAGATTCCAAGGGGTAGTTTGTTTGAGCTAGTGGTATGCCCTCACTATCTTTTTGAAATCATCGGATTTGTAGGGTTCTCTTTTATTTCTCAGACCTTGTATGCATTCGCCGTCGCGGTCGGAACAGCATTCTATTTGACTGGTAGGAGCTATGCTACCAGGAGATGGGAAGGCCGAAATCATCCAAATCGATCTTTCTATGAATGTGGGATAAAAACAGTAAAAAATTGCCCTTCCCCAATAATATATAATCATATAGTAGCTGGTAATTCTGAAAAAAGCTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

179

Amino Acids

20.11

Weight (kDa)

8.78

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	36 - 144	4.1e-15	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccB7I	CCANNNNNTGG	1 cut(s)	414
AccI	GTMKAC	1 cut(s)	142
AccII	CGCG	1 cut(s)	365
AciI	CCGC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	129
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	118, 305
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	2 cut(s)	124, 407
AluBI	AGCT	4 cut(s)	277, 399, 512, 531
AluI	AGCT	4 cut(s)	277, 399, 512, 531
Alw26I	GTCTC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	421
ApoI	RAATTY	1 cut(s)	129
BccI	CCATC	2 cut(s)	177, 408
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	2 cut(s)	126, 409
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	48, 278
BlpI	GCTNAGC	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	126, 409
BmgBI	CACGTC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	126, 409
Bpu1102I	GCTNAGC	1 cut(s)	69
Bsa29I	ATCGAT	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	199
BsaJI	CCNNGG	3 cut(s)	88, 124, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	238
Bse8I	GATNNNNATC	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	126, 409
BseCI	ATCGAT	1 cut(s)	439
BseDI	CCNNGG	3 cut(s)	88, 124, 257
BseGI	GGATG	2 cut(s)	200, 430
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	83, 353
BseNI	ACTGG	1 cut(s)	394
Bsh1236I	CGCG	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	423
BshVI	ATCGAT	1 cut(s)	439
BsiEI	CGRYCG	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsmI	GAATGC	2 cut(s)	353, 377
BsnI	GGCC	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	60, 194, 440
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	2 cut(s)	82, 352
BspDI	ATCGAT	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	3 cut(s)	88, 124, 257
BssMI	GATC	3 cut(s)	60, 194, 440
BssT1I	CCWWGG	2 cut(s)	88, 257
Bst2UI	CCWGG	2 cut(s)	126, 409
Bst4CI	ACNGT	2 cut(s)	82, 469
Bst6I	CTCTTC	1 cut(s)	211
BstDEI	CTNAG	3 cut(s)	69, 339, 532
BstF5I	GGATG	2 cut(s)	200, 430
BstFNI	CGCG	1 cut(s)	365
BstKTI	GATC	3 cut(s)	63, 197, 443
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	3 cut(s)	60, 194, 440
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	126, 409
BstSCI	CCNGG	2 cut(s)	124, 407
BstUI	CGCG	1 cut(s)	365
Bsu15I	ATCGAT	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	423
BsuTUI	ATCGAT	1 cut(s)	439
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	200, 430
ClaI	ATCGAT	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	7 cut(s)	94, 103, 277, 399, 423, 512, 531
CviKI_1	RGCY	7 cut(s)	94, 103, 277, 399, 423, 512, 531
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	3 cut(s)	69, 339, 532
DpnI	GATC	3 cut(s)	62, 196, 442
DpnII	GATC	3 cut(s)	60, 194, 440
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	88, 257
Eco32I	GATATC	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	124, 407
EcoRV	GATATC	1 cut(s)	153
EcoT14I	CCWWGG	2 cut(s)	88, 257
EcoT22I	ATGCAT	1 cut(s)	355
ErhI	CCWWGG	2 cut(s)	88, 257
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	1 cut(s)	61
FatI	CATG	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	142
FokI	GGATG	2 cut(s)	187, 417
FspBI	CTAG	2 cut(s)	48, 278
HaeIII	GGCC	1 cut(s)	423
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	5 cut(s)	314, 342, 371, 523, 535
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	2 cut(s)	220, 365
HpyAV	CCTTC	2 cut(s)	413, 492
HpyCH4III	ACNGT	2 cut(s)	82, 469
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	17, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	3 cut(s)	69, 339, 532
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	60, 194, 440
LmnI	GCTCC	1 cut(s)	396
LpnPI	CCDG	8 cut(s)	111, 111, 138, 141, 375, 394, 421, 498
MaeI	CTAG	2 cut(s)	48, 278
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	2 cut(s)	35, 82
MalI	GATC	3 cut(s)	62, 196, 442
MboI	GATC	3 cut(s)	60, 194, 440
MboII	GAAGA	2 cut(s)	198, 232
MluCI	AATT	6 cut(s)	18, 108, 129, 160, 475, 517
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	2 cut(s)	214, 300
Mph1103I	ATGCAT	1 cut(s)	355
MspR9I	CCNGG	2 cut(s)	126, 409
Mva1269I	GAATGC	2 cut(s)	353, 377
MvaI	CCWGG	2 cut(s)	126, 409
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	3 cut(s)	60, 194, 440
NlaIII	CATG	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	2 cut(s)	353, 377
PfeI	GAWTC	1 cut(s)	253
PflMI	CCANNNNNTGG	1 cut(s)	414
PsiI	TTATAA	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	124, 407
PspGI	CCWGG	2 cut(s)	124, 407
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
Sau3AI	GATC	3 cut(s)	60, 194, 440
ScrFI	CCNGG	2 cut(s)	126, 409
SetI	ASST	8 cut(s)	47, 78, 180, 279, 347, 401, 514, 533
Sse9I	AATT	6 cut(s)	18, 108, 129, 160, 475, 517
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	2 cut(s)	48, 278
StyD4I	CCNGG	2 cut(s)	124, 407
StyI	CCWWGG	2 cut(s)	88, 257
TaaI	ACNGT	2 cut(s)	82, 469
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	2 cut(s)	218, 439
TasI	AATT	6 cut(s)	18, 108, 129, 160, 475, 517
TfiI	GAWTC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	465
TspGWI	ACGGA	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	414
XapI	RAATTY	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	142
XspI	CTAG	2 cut(s)	48, 278
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.