Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Reverse (-)

9109305 .. 9111075

Gene Structure 1771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G066100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTTGTTGACATTAATTTTCCCACCACCTCCTTCGATTTTCATGGCAGCAATGTCTGTGATTAGCTTCACATCATTAGCCAATGCTGGGTTCTCAGAGCTGAGAGGAAAGCACATGCAATATTCCAAGTTCTGGAATTTCAATTCTTCTCAAAACTCAGCAGAAAAAAAACAGCAAATTCCACAACTATCTGGTAGAACAGGCATGCTGATTTTGTATGCTCCTGCGTTTCTAGCCGCTCTCTCATGCTTGCTGTTTTTTCCCCATCACAGTACCAGGCATCTGTTGCTCTCCTCAGCTCTAACCCTTCATTTTCTTAAAAGGCTTCTTGAGGTTCAGTTTGTGCACAGCTACAGTGGAGGTATGAGTATTGACACTGCAATCCCTATCTCTCTCAGTTACTTCCTGTCGACAGCAACCATGATTTATGGTCAAAACCTAACCCAAGGGCTTCCAGAGCCCCCAATTGATTTGAAGGAGCCTGGGATTCTCTTGTTTCTGATAGGAATTTCTGGCAACTTCTATCATCACTACATTCTTTCAAAAATGAGGTCAAAGGGTGACAAGGAGTATAAGATTCCAAAGGGTGGTTTGTTTGAACTTGTGATATGCCCCCACTATTTCTTTGAGATCATGGGATTTGTTGGGGTTTCTTGCATTTCTCAGACTCTCTATGCATTCTCCTTCGCCATGGGAACCGCACTCTACTTGACGGGAAGGAGCTGTGCCACCAGGAAATGGTATCTTTCCAAGTTTAAAGAGTTTCCCCAAACTGTCAAGGCTCTCATTCCATATGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

268

Amino Acids

29.97

Weight (kDa)

9.44

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	132, 587, 738
AccBSI	CCGCTC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	410
AciI	CCGC	2 cut(s)	237, 699
AcsI	RAATTY	3 cut(s)	136, 177, 507
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	4 cut(s)	87, 132, 587, 738
AgsI	TTSAA	4 cut(s)	142, 475, 543, 599
AjnI	CCWGG	3 cut(s)	275, 481, 731
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	5 cut(s)	66, 100, 299, 351, 723
AluI	AGCT	5 cut(s)	66, 100, 299, 351, 723
Alw21I	GWGCWC	1 cut(s)	348
Alw44I	GTGCAC	1 cut(s)	344
ApaLI	GTGCAC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	3 cut(s)	136, 177, 507
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AseI	ATTAAT	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	572
BaeGI	GKGCMC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	348
BbvCI	CCTCAGC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	273
BciT130I	CCWGG	3 cut(s)	277, 483, 733
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	352
BisI	GCNGC	2 cut(s)	48, 237
BlsI	GCNGC	2 cut(s)	49, 238
Bme1390I	CCNGG	3 cut(s)	277, 483, 733
BmiI	GGNNCC	2 cut(s)	480, 697
BmrFI	CCNGG	3 cut(s)	277, 483, 733
BmsI	GCATC	1 cut(s)	289
Bpu10I	CCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	445, 482, 690
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 132, 587, 738
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	3 cut(s)	277, 483, 733
BseDI	CCNNGG	3 cut(s)	445, 482, 690
BseLI	CCNNNNNNNGG	4 cut(s)	87, 132, 587, 738
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	6 cut(s)	92, 108, 171, 309, 409, 677
BseRI	GAGGAG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	59
BseYI	CCCAGC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	348
BslI	CCNNNNNNNGG	4 cut(s)	87, 132, 587, 738
BsmI	GAATGC	1 cut(s)	677
Bsp1286I	GDGCHC	2 cut(s)	348, 462
Bsp143I	GATC	1 cut(s)	630
Bsp19I	CCATGG	1 cut(s)	690
BspACI	CCGC	2 cut(s)	237, 699
BspCNI	CTCAG	6 cut(s)	93, 107, 170, 308, 408, 676
BspLI	GGNNCC	2 cut(s)	480, 697
BsrBI	CCGCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	57
BssECI	CCNNGG	3 cut(s)	445, 482, 690
BssMI	GATC	1 cut(s)	630
BssT1I	CCWWGG	2 cut(s)	445, 690
Bst2UI	CCWGG	3 cut(s)	277, 483, 733
Bst4CI	ACNGT	3 cut(s)	272, 356, 775
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	206, 251
BstDEI	CTNAG	6 cut(s)	94, 101, 157, 295, 395, 663
BstDSI	CCRYGG	1 cut(s)	690
BstKTI	GATC	1 cut(s)	633
BstMBI	GATC	1 cut(s)	630
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 286, 457
BstNI	CCWGG	3 cut(s)	277, 483, 733
BstNSI	RCATGY	2 cut(s)	118, 208
BstSCI	CCNGG	3 cut(s)	275, 481, 731
BstSFI	CTRYAG	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	690
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	361, 375
Cac8I	GCNNGC	2 cut(s)	206, 251
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	7 cut(s)	43, 115, 205, 246, 421, 634, 691
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	6 cut(s)	94, 101, 157, 295, 395, 663
DpnI	GATC	1 cut(s)	632
DpnII	GATC	1 cut(s)	630
DraI	TTTAAA	1 cut(s)	757
Eco130I	CCWWGG	2 cut(s)	445, 690
Eco24I	GRGCYC	1 cut(s)	462
EcoRII	CCWGG	3 cut(s)	275, 481, 731
EcoT14I	CCWWGG	2 cut(s)	445, 690
EcoT22I	ATGCAT	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	445, 690
FaeI	CATG	7 cut(s)	46, 118, 208, 249, 424, 637, 694
FatI	CATG	7 cut(s)	42, 114, 204, 245, 420, 633, 690
FauNDI	CATATG	1 cut(s)	793
FblI	GTMKAC	1 cut(s)	410
Fnu4HI	GCNGC	2 cut(s)	48, 237
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	2 cut(s)	48, 237
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	2 cut(s)	48, 237
GsaI	CCCAGC	1 cut(s)	90
Hin1II	CATG	7 cut(s)	46, 118, 208, 249, 424, 637, 694
HincII	GTYRAC	2 cut(s)	9, 411
HindII	GTYRAC	2 cut(s)	9, 411
HinfI	GANTC	3 cut(s)	487, 577, 667
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	3 cut(s)	9, 346, 411
Hpy188I	TCNGA	3 cut(s)	97, 501, 666
Hpy188III	TCNNGA	3 cut(s)	133, 329, 455
Hpy8I	GTNNAC	3 cut(s)	9, 346, 411
HpyAV	CCTTC	5 cut(s)	42, 317, 469, 694, 711
HpyCH4III	ACNGT	3 cut(s)	272, 356, 775
HpyCH4V	TGCA	5 cut(s)	118, 346, 380, 657, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 286, 457
HpyF3I	CTNAG	6 cut(s)	94, 101, 157, 295, 395, 663
Hsp92II	CATG	7 cut(s)	46, 118, 208, 249, 424, 637, 694
Kzo9I	GATC	1 cut(s)	630
LmnI	GCTCC	3 cut(s)	226, 478, 720
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	398, 560
MalI	GATC	1 cut(s)	632
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	1 cut(s)	630
MboII	GAAGA	1 cut(s)	138
MfeI	CAATTG	1 cut(s)	465
MhlI	GDGCHC	2 cut(s)	348, 462
MluCI	AATT	6 cut(s)	15, 136, 142, 177, 465, 507
MlyI	GAGTC	1 cut(s)	661
MnlI	CCTC	6 cut(s)	39, 98, 304, 325, 353, 543
Mph1103I	ATGCAT	1 cut(s)	679
MseI	TTAA	3 cut(s)	14, 318, 756
MspR9I	CCNGG	3 cut(s)	277, 483, 733
MunI	CAATTG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	677
MvaI	CCWGG	3 cut(s)	277, 483, 733
MwoI	GCNNNNNNNGC	3 cut(s)	233, 286, 457
NcoI	CCATGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	793
NdeII	GATC	1 cut(s)	630
NlaIII	CATG	7 cut(s)	46, 118, 208, 249, 424, 637, 694
NlaIV	GGNNCC	2 cut(s)	480, 697
NmuCI	GTSAC	1 cut(s)	560
NsiI	ATGCAT	1 cut(s)	679
NspI	RCATGY	2 cut(s)	118, 208
PaeI	GCATGC	1 cut(s)	208
PctI	GAATGC	1 cut(s)	677
PfeI	GAWTC	2 cut(s)	487, 577
PflMI	CCANNNNNTGG	3 cut(s)	132, 587, 738
PkrI	GCNGC	2 cut(s)	49, 238
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
PshBI	ATTAAT	1 cut(s)	14
Psp6I	CCWGG	3 cut(s)	275, 481, 731
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	3 cut(s)	275, 481, 731
PspN4I	GGNNCC	2 cut(s)	480, 697
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	409
SaqAI	TTAA	3 cut(s)	14, 318, 756
SatI	GCNGC	2 cut(s)	48, 237
Sau3AI	GATC	1 cut(s)	630
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	3 cut(s)	277, 483, 733
SduI	GDGCHC	2 cut(s)	348, 462
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	6 cut(s)	15, 136, 142, 177, 465, 507
SsiI	CCGC	2 cut(s)	237, 699
SspI	AATATT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	3 cut(s)	275, 481, 731
StyI	CCWWGG	2 cut(s)	445, 690
TaaI	ACNGT	3 cut(s)	272, 356, 775
TaqI	TCGA	2 cut(s)	35, 410
TasI	AATT	6 cut(s)	15, 136, 142, 177, 465, 507
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	487, 577
Tru1I	TTAA	3 cut(s)	14, 318, 756
Tru9I	TTAA	3 cut(s)	14, 318, 756
TscAI	CASTG	2 cut(s)	361, 382
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	2 cut(s)	31, 299
TspRI	CASTG	2 cut(s)	361, 382
Van91I	CCANNNNNTGG	3 cut(s)	132, 587, 738
VneI	GTGCAC	1 cut(s)	344
VspI	ATTAAT	1 cut(s)	14
XapI	RAATTY	3 cut(s)	136, 177, 507
XceI	RCATGY	2 cut(s)	118, 208
XmiI	GTMKAC	1 cut(s)	410
XspI	CTAG	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.