Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Forward (+)

17435778 .. 17437606

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTGAGCATGGCATGGCCAATCATATTTGTTTTTCCACCAGCTTCTGTGTTCATCACAGCCATGTCAGTGATCTGCTTCACAGCGTCAGCTTATGCCGGGTTCTCGGAGGTGAGAGGAAAGCACCTGGAGTATTCCAAGTTTTGGAAAAATAATAGCAATCAATCCATTTCTCAAAAATCAAAGCAAATTAAAATATCCGGTAGAAGAGGCATGCAAATTACTTATACTCCCTCATTTCTTGCTAGTCTCACATCCTTGGTGTTCGTTCAATTTGTTCACAAGTCCAGTGGAGGGATGGCACTTGATACTGCAATTTTTATCTGTTTCAGTTACTTCACGTCTAGTGCCACCATGATCTACGCTCAGCACCTTACTGTAACCCAAGGGCTACCGGAGCCACAAATTGATTTGAAGTACCCTGGAATTCTGTTGTGTCTACTTGGGATATCTGGCAATTTCTACCATCACTACCTACTTTCCCGAATGAGATCATCATCCTCTTCGTCTCCGTCGAAGATAAAAAGCAATGATGATAAGGATTATAAGATTCCAAGGGGTGGTTTGTTTGAGCTAGTGGTATGCCCTCACTATCCTTTTGAAATCATCGGATTTGTATGGTTCTCTTTTATTTCTCAGACCTTGAGCTATGCTACCAGGAGATGGTATCTTTCTGAGTTTAAGCATTTTCCCCAAAATGTCAAGGCTCTCATTCCATATCTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

242

Amino Acids

27.42

Weight (kDa)

9.53

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	132 - 242	6e-14	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AccB7I	CCANNNNNTGG	3 cut(s)	144, 560, 663
AccI	GTMKAC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	4 cut(s)	144, 294, 560, 663
AgsI	TTSAA	3 cut(s)	272, 415, 602
AjiI	CACGTC	1 cut(s)	342
AjnI	CCWGG	3 cut(s)	126, 421, 656
AluBI	AGCT	4 cut(s)	44, 92, 574, 648
AluI	AGCT	4 cut(s)	44, 92, 574, 648
Alw26I	GTCTC	2 cut(s)	254, 513
AlwNI	CAGNNNCTG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	426
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	16, 124
BalI	TGGCCA	1 cut(s)	19
BccI	CCATC	3 cut(s)	292, 474, 657
BciT130I	CCWGG	3 cut(s)	128, 423, 658
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	254, 513
BfaI	CTAG	3 cut(s)	246, 345, 575
BlpI	GCTNAGC	1 cut(s)	366
Bme1390I	CCNGG	4 cut(s)	100, 128, 423, 658
BmgBI	CACGTC	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	4 cut(s)	100, 128, 423, 658
BpmI	CTGGAG	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	664
BpuMI	CCSGG	1 cut(s)	100
BsaBI	GATNNNNATC	1 cut(s)	496
BsaJI	CCNNGG	4 cut(s)	258, 385, 421, 554
BsaWI	WCCGGW	2 cut(s)	200, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 294, 560, 663
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	535
Bse8I	GATNNNNATC	1 cut(s)	496
BseBI	CCWGG	3 cut(s)	128, 423, 658
BseDI	CCNNGG	4 cut(s)	258, 385, 421, 554
BseGI	GGATG	3 cut(s)	254, 303, 497
BseJI	GATNNNNATC	1 cut(s)	496
BseLI	CCNNNNNNNGG	4 cut(s)	144, 294, 560, 663
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	380, 650, 666
BseNI	ACTGG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	99, 201, 395
BslI	CCNNNNNNNGG	4 cut(s)	144, 294, 560, 663
BsmAI	GTCTC	2 cut(s)	254, 513
BsmBI	CGTCTC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	72, 357, 491
Bsp1720I	GCTNAGC	1 cut(s)	366
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	3 cut(s)	379, 649, 667
BspLI	GGNNCC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	4 cut(s)	258, 385, 421, 554
BssMI	GATC	3 cut(s)	72, 357, 491
BssT1I	CCWWGG	3 cut(s)	258, 385, 554
Bst2UI	CCWGG	3 cut(s)	128, 423, 658
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	2 cut(s)	202, 508
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	3 cut(s)	366, 636, 675
BstF5I	GGATG	3 cut(s)	254, 303, 497
BstKTI	GATC	3 cut(s)	75, 360, 494
BstMAI	GTCTC	2 cut(s)	254, 513
BstMBI	GATC	3 cut(s)	72, 357, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	3 cut(s)	128, 423, 658
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	4 cut(s)	98, 126, 421, 656
BsuRI	GGCC	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	342
BtsCI	GGATG	3 cut(s)	254, 303, 497
BtsIMutI	CAGTG	2 cut(s)	75, 295
Cac8I	GCNNGC	1 cut(s)	215
CaiI	CAGNNNCTG	1 cut(s)	47
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	418
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	5 cut(s)	10, 15, 64, 214, 355
CviJI	RGCY	9 cut(s)	19, 44, 62, 92, 391, 400, 574, 648, 707
CviKI_1	RGCY	9 cut(s)	19, 44, 62, 92, 391, 400, 574, 648, 707
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	366, 636, 675
DpnI	GATC	3 cut(s)	74, 359, 493
DpnII	GATC	3 cut(s)	72, 357, 491
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	202, 508
EarI	CTCTTC	2 cut(s)	202, 508
Eco130I	CCWWGG	3 cut(s)	258, 385, 554
Eco32I	GATATC	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	3 cut(s)	126, 421, 656
EcoRV	GATATC	1 cut(s)	450
EcoT14I	CCWWGG	3 cut(s)	258, 385, 554
ErhI	CCWWGG	3 cut(s)	258, 385, 554
Esp3I	CGTCTC	1 cut(s)	513
FaeI	CATG	5 cut(s)	13, 18, 67, 217, 358
FatI	CATG	5 cut(s)	9, 14, 63, 213, 354
FblI	GTMKAC	1 cut(s)	439
FokI	GGATG	3 cut(s)	241, 310, 484
FspBI	CTAG	3 cut(s)	246, 345, 575
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	3 cut(s)	99, 201, 395
HgaI	GACGC	1 cut(s)	75
Hin1II	CATG	5 cut(s)	13, 18, 67, 217, 358
HinfI	GANTC	1 cut(s)	550
HpaII	CCGG	3 cut(s)	99, 201, 395
HphI	GGTGA	2 cut(s)	16, 124
Hpy166II	GTNNAC	2 cut(s)	280, 440
Hpy188I	TCNGA	4 cut(s)	109, 611, 639, 676
Hpy188III	TCNNGA	1 cut(s)	483
Hpy8I	GTNNAC	2 cut(s)	280, 440
Hpy99I	CGWCG	1 cut(s)	517
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	2 cut(s)	217, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	3 cut(s)	366, 636, 675
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	5 cut(s)	13, 18, 67, 217, 358
Kzo9I	GATC	3 cut(s)	72, 357, 491
LmnI	GCTCC	1 cut(s)	397
MaeI	CTAG	3 cut(s)	246, 345, 575
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	332, 379
MalI	GATC	3 cut(s)	74, 359, 493
MboI	GATC	3 cut(s)	72, 357, 491
MboII	GAAGA	3 cut(s)	219, 495, 529
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	7 cut(s)	189, 219, 272, 315, 405, 426, 457
MluNI	TGGCCA	1 cut(s)	19
MnlI	CCTC	7 cut(s)	103, 110, 203, 244, 287, 511, 597
Mox20I	TGGCCA	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	2 cut(s)	192, 681
MslI	CAYNNNNRTG	2 cut(s)	62, 68
Msp20I	TGGCCA	1 cut(s)	19
MspI	CCGG	3 cut(s)	99, 201, 395
MspR9I	CCNGG	4 cut(s)	100, 128, 423, 658
MvaI	CCWGG	3 cut(s)	128, 423, 658
MwoI	GCNNNNNNNGC	1 cut(s)	397
NciI	CCSGG	1 cut(s)	100
NdeII	GATC	3 cut(s)	72, 357, 491
NlaIII	CATG	5 cut(s)	13, 18, 67, 217, 358
NlaIV	GGNNCC	1 cut(s)	399
NspI	RCATGY	1 cut(s)	217
PaeI	GCATGC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PfeI	GAWTC	1 cut(s)	550
PflMI	CCANNNNNTGG	3 cut(s)	144, 560, 663
PsiI	TTATAA	1 cut(s)	546
Psp6I	CCWGG	3 cut(s)	126, 421, 656
PspGI	CCWGG	3 cut(s)	126, 421, 656
PspN4I	GGNNCC	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	2 cut(s)	62, 68
SaqAI	TTAA	2 cut(s)	192, 681
Sau3AI	GATC	3 cut(s)	72, 357, 491
ScrFI	CCNGG	4 cut(s)	100, 128, 423, 658
SmiMI	CAYNNNNRTG	2 cut(s)	62, 68
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
SphI	GCATGC	1 cut(s)	217
Sse9I	AATT	7 cut(s)	189, 219, 272, 315, 405, 426, 457
SspMI	CTAG	3 cut(s)	246, 345, 575
StyD4I	CCNGG	4 cut(s)	98, 126, 421, 656
StyI	CCWWGG	3 cut(s)	258, 385, 554
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	515
TasI	AATT	7 cut(s)	189, 219, 272, 315, 405, 426, 457
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	2 cut(s)	192, 681
Tru9I	TTAA	2 cut(s)	192, 681
TscAI	CASTG	2 cut(s)	75, 295
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	2 cut(s)	75, 295
Van91I	CCANNNNNTGG	3 cut(s)	144, 560, 663
XapI	RAATTY	1 cut(s)	426
XceI	RCATGY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	439
XspI	CTAG	3 cut(s)	246, 345, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.