Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Forward (+)

6808700 .. 6816739

Gene Structure 8040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07871.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGTGAGCATGGCGTGGCCAATCATATTTGTTTTTCCACCACCAGCTTCTGTGTTCATCACAGCCATGTCAGCAATCAGCTTCACCTTGGCCAGTGCAGGAATATCAGAGATGAGAGGTAAGAACATGCAGTATTCCAAGTTCTGGAAGAATAGCAATCAACCCGATTCTCAAAAATCCAAGCAAATTTACATATCTGGTAGAAGAGGCATGCAAATTGCGTATACTCCCGCATTTCTTGCTAGTCTCACATCCTTGGTGCTCTTTCCCCATAACGACGGTATCAGATATCTATTGCTCTCCTCAGCTCTAACCATTCATTTCCTCAAACGACTTTTGGAGGTTCAATTTGTTCACAAGTACAGTAGTGGGATGGCGCTTGATTCTGCGATTCCTATCGTTCTCAGTTACTTCATGGCTACTGTCACTGCAATTTACACGCAGCACCTTACTATAACCCAAGGGCTACCAGAGCCACCAATTGATTTGAAGTACCCTGGAATTGTGTTGTTTCTACTTGGGATAACTGGTAATTTCTACCATCATTACCTTCTTTCCCAACTGAGATCATCATCCTCTTCGTCTCCGTCAAGCTCACAAAGCAATAACGATGAGGATTATAAGATTCCAAAGGGTGGATTGTTTGAGCTAGTGATATGCCCTCACTATCTATTTGAAATCATAGCATTTGTAGGGTTCTCTTTTATTTCTCAGACCTTGTATGCGTTTGCTTTCTTGGCCGGAACAGTATTCTATTTGACTGGTAGGAGCTATGCTACTAGGAGGTGGTATCTTTCTAAGTTTAAGAATTTTCCCCAAAATGTCAAGGCTCTCATTCCATATGTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

284

Amino Acids

31.87

Weight (kDa)

9.56

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	164 - 281	5.8e-25	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
AccB7I	CCANNNNNTGG	2 cut(s)	144, 635
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	1 cut(s)	231
AcoI	YGGCCR	3 cut(s)	17, 90, 738
AcsI	RAATTY	2 cut(s)	186, 808
AfaI	GTAC	2 cut(s)	362, 494
AfiI	CCNNNNNNNGG	2 cut(s)	144, 635
AgsI	TTSAA	3 cut(s)	347, 490, 677
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	6 cut(s)	47, 81, 308, 594, 649, 771
AluI	AGCT	6 cut(s)	47, 81, 308, 594, 649, 771
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	251, 588
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	3 cut(s)	17, 90, 738
ApeKI	GCWGC	1 cut(s)	442
ApoI	RAATTY	2 cut(s)	186, 808
AspLEI	GCGC	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	16, 76
BaeI	ACNNNNGTAYC	2 cut(s)	265, 298
BalI	TGGCCA	2 cut(s)	19, 92
Bbv12I	GWGCWC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	2 cut(s)	367, 549
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	2 cut(s)	251, 588
BfaI	CTAG	3 cut(s)	243, 650, 780
BfoI	RGCGCY	1 cut(s)	380
BisI	GCNGC	1 cut(s)	443
BlsI	GCNGC	1 cut(s)	444
Bme1390I	CCNGG	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	498
Bpu10I	CCTNAGC	1 cut(s)	304
BsaBI	GATNNNNATC	2 cut(s)	395, 571
BsaJI	CCNNGG	4 cut(s)	87, 255, 460, 496
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 635
Bse1I	ACTGG	3 cut(s)	93, 532, 766
Bse8I	GATNNNNATC	2 cut(s)	395, 571
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	4 cut(s)	87, 255, 460, 496
BseGI	GGATG	3 cut(s)	251, 378, 572
BseJI	GATNNNNATC	2 cut(s)	395, 571
BseLI	CCNNNNNNNGG	2 cut(s)	144, 635
BseMII	CTCAG	4 cut(s)	318, 418, 554, 725
BseNI	ACTGG	3 cut(s)	93, 532, 766
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	19, 92, 740
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	741
BslI	CCNNNNNNNGG	2 cut(s)	144, 635
BsmAI	GTCTC	2 cut(s)	251, 588
BsmBI	CGTCTC	1 cut(s)	588
BsnI	GGCC	3 cut(s)	19, 92, 740
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	566
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	3 cut(s)	19, 92, 740
BspCNI	CTCAG	4 cut(s)	317, 417, 555, 724
BsrI	ACTGG	3 cut(s)	93, 532, 766
BssECI	CCNNGG	4 cut(s)	87, 255, 460, 496
BssMI	GATC	1 cut(s)	566
BssNAI	GTATAC	1 cut(s)	225
BssT1I	CCWWGG	3 cut(s)	87, 255, 460
Bst1107I	GTATAC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	4 cut(s)	281, 365, 424, 748
Bst6I	CTCTTC	2 cut(s)	199, 583
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	5 cut(s)	304, 404, 563, 711, 798
BstF5I	GGATG	3 cut(s)	251, 378, 572
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	1 cut(s)	569
BstMAI	GTCTC	2 cut(s)	251, 588
BstMBI	GATC	1 cut(s)	566
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 239, 472, 600, 737
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	2 cut(s)	130, 214
BstSCI	CCNGG	1 cut(s)	496
BstV1I	GCAGC	1 cut(s)	454
BstZ17I	GTATAC	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	19, 92, 740
BtsCI	GGATG	3 cut(s)	251, 378, 572
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	100, 426
Cac8I	GCNNGC	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	361, 493
CviAII	CATG	5 cut(s)	10, 67, 127, 211, 415
CviQI	GTAC	2 cut(s)	361, 493
DdeI	CTNAG	5 cut(s)	304, 404, 563, 711, 798
DpnI	GATC	1 cut(s)	568
DpnII	GATC	1 cut(s)	566
EaeI	YGGCCR	3 cut(s)	17, 90, 738
Eam1104I	CTCTTC	2 cut(s)	199, 583
EarI	CTCTTC	2 cut(s)	199, 583
Eco130I	CCWWGG	3 cut(s)	87, 255, 460
Eco32I	GATATC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	496
EcoRV	GATATC	1 cut(s)	290
EcoT14I	CCWWGG	3 cut(s)	87, 255, 460
ErhI	CCWWGG	3 cut(s)	87, 255, 460
Esp3I	CGTCTC	1 cut(s)	588
FaeI	CATG	5 cut(s)	13, 70, 130, 214, 418
FatI	CATG	5 cut(s)	9, 66, 126, 210, 414
FauI	CCCGC	1 cut(s)	238
FauNDI	CATATG	1 cut(s)	841
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	443
FokI	GGATG	3 cut(s)	238, 385, 559
Fsp4HI	GCNGC	1 cut(s)	443
FspBI	CTAG	3 cut(s)	243, 650, 780
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	443
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	3 cut(s)	19, 92, 740
HapII	CCGG	1 cut(s)	741
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	5 cut(s)	13, 70, 130, 214, 418
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	4 cut(s)	167, 383, 391, 625
HpaII	CCGG	1 cut(s)	741
HphI	GGTGA	2 cut(s)	16, 76
Hpy166II	GTNNAC	2 cut(s)	225, 355
Hpy188I	TCNGA	3 cut(s)	109, 287, 714
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	2 cut(s)	225, 355
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	560
HpyCH4III	ACNGT	4 cut(s)	281, 365, 424, 748
HpyCH4V	TGCA	4 cut(s)	98, 130, 214, 431
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 239, 472, 600, 737
HpyF3I	CTNAG	5 cut(s)	304, 404, 563, 711, 798
Hsp92II	CATG	5 cut(s)	13, 70, 130, 214, 418
HspAI	GCGC	1 cut(s)	377
Kzo9I	GATC	1 cut(s)	566
LmnI	GCTCC	1 cut(s)	768
Lsp1109I	GCAGC	1 cut(s)	454
MaeI	CTAG	3 cut(s)	243, 650, 780
MaeIII	GTNAC	2 cut(s)	407, 424
MalI	GATC	1 cut(s)	568
MboI	GATC	1 cut(s)	566
MboII	GAAGA	3 cut(s)	160, 216, 570
MfeI	CAATTG	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	264
MlsI	TGGCCA	2 cut(s)	19, 92
MluCI	AATT	8 cut(s)	186, 216, 347, 432, 480, 501, 532, 808
MluNI	TGGCCA	2 cut(s)	19, 92
MnlI	CCTC	9 cut(s)	110, 200, 313, 334, 335, 586, 607, 672, 777
Mox20I	TGGCCA	2 cut(s)	19, 92
MscI	TGGCCA	2 cut(s)	19, 92
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	2 cut(s)	19, 92
MspI	CCGG	1 cut(s)	741
MspR9I	CCNGG	1 cut(s)	498
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	5 cut(s)	71, 239, 472, 600, 737
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	1 cut(s)	566
NlaIII	CATG	5 cut(s)	13, 70, 130, 214, 418
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	2 cut(s)	130, 214
PaeI	GCATGC	1 cut(s)	214
PfeI	GAWTC	4 cut(s)	167, 383, 391, 625
PflMI	CCANNNNNTGG	2 cut(s)	144, 635
PkrI	GCNGC	1 cut(s)	444
PsiI	TTATAA	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PsrI	GAACNNNNNNTAC	2 cut(s)	125, 157
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	362, 494
RsaNI	GTAC	2 cut(s)	361, 493
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	1 cut(s)	443
Sau3AI	GATC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	65
SphI	GCATGC	1 cut(s)	214
Sse9I	AATT	8 cut(s)	186, 216, 347, 432, 480, 501, 532, 808
SsiI	CCGC	1 cut(s)	231
SspMI	CTAG	3 cut(s)	243, 650, 780
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	3 cut(s)	87, 255, 460
TaaI	ACNGT	4 cut(s)	281, 365, 424, 748
TasI	AATT	8 cut(s)	186, 216, 347, 432, 480, 501, 532, 808
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	4 cut(s)	167, 383, 391, 625
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	2 cut(s)	100, 433
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	3 cut(s)	46, 308, 403
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	2 cut(s)	100, 433
Van91I	CCANNNNNTGG	2 cut(s)	144, 635
XapI	RAATTY	2 cut(s)	186, 808
XceI	RCATGY	2 cut(s)	130, 214
XmiI	GTMKAC	1 cut(s)	224
XspI	CTAG	3 cut(s)	243, 650, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.