Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001544.1

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Reverse (-)

95754 .. 97573

Gene Structure 1820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001544.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggcatggccaatcatatttgtttttccaccagcttctgtgttcatcacagccatgtcagtgatctgcttcacagcgtcagcttatgccgggttctcggaggttcaatttgttcacaagtccagtggagggatggcacttgatactgcaatttttatctgtttcagttacttcacgtctagtgccaccatgatctacgctcagcaccttactgtaacccaagggctaccggagccacaaattgatttgaagtaccctggaattctgttgtgtctacttgggatatctggcaatttctaccatcactacctactttcccgaatgagatcatcatcctcttcgtctccgtcgaagataaaaagcaatgatgataaggattataagattccaaggggtggtttgtttgagctagtggtatgccctcactatccttttgaaatcatcggatttgtatggttctcttttatttctcagaccttgtatgcattcgccgtcgcggtcggaacagcattctatttgactggtaggagctatgctaccaggagatggtatctttctgagtttaagcattttccccaaaatgtcaaggctctcattccatatcttttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

203

Amino Acids

22.82

Weight (kDa)

8.84

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AccB7I	CCANNNNNTGG	2 cut(s)	395, 546
AccI	GTMKAC	1 cut(s)	274
AccII	CGCG	1 cut(s)	497
AciI	CCGC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	261
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	3 cut(s)	129, 395, 546
AgsI	TTSAA	3 cut(s)	107, 250, 437
AjiI	CACGTC	1 cut(s)	177
AjnI	CCWGG	2 cut(s)	256, 539
AluBI	AGCT	4 cut(s)	35, 83, 409, 531
AluI	AGCT	4 cut(s)	35, 83, 409, 531
Alw26I	GTCTC	1 cut(s)	348
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	10
BccI	CCATC	3 cut(s)	127, 309, 540
BceAI	ACGGC	1 cut(s)	476
BciT130I	CCWGG	2 cut(s)	258, 541
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	180, 410
BlpI	GCTNAGC	1 cut(s)	201
Bme1390I	CCNGG	3 cut(s)	91, 258, 541
BmgBI	CACGTC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	3 cut(s)	91, 258, 541
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	331
BsaJI	CCNNGG	3 cut(s)	220, 256, 389
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 395, 546
Bse1I	ACTGG	2 cut(s)	123, 526
Bse3DI	GCAATG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	331
BseBI	CCWGG	2 cut(s)	258, 541
BseDI	CCNNGG	3 cut(s)	220, 256, 389
BseGI	GGATG	2 cut(s)	138, 332
BseJI	GATNNNNATC	1 cut(s)	331
BseLI	CCNNNNNNNGG	3 cut(s)	129, 395, 546
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	3 cut(s)	215, 485, 549
BseNI	ACTGG	2 cut(s)	123, 526
Bsh1236I	CGCG	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	10
BsiEI	CGRYCG	1 cut(s)	501
BsiSI	CCGG	2 cut(s)	90, 230
BslI	CCNNNNNNNGG	3 cut(s)	129, 395, 546
BsmAI	GTCTC	1 cut(s)	348
BsmBI	CGTCTC	1 cut(s)	348
BsmI	GAATGC	2 cut(s)	485, 509
BsnI	GGCC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	63, 192, 326
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	3 cut(s)	214, 484, 550
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	123, 526
BssECI	CCNNGG	3 cut(s)	220, 256, 389
BssMI	GATC	3 cut(s)	63, 192, 326
BssT1I	CCWWGG	2 cut(s)	220, 389
Bst2UI	CCWGG	2 cut(s)	258, 541
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	343
BstDEI	CTNAG	3 cut(s)	201, 471, 558
BstF5I	GGATG	2 cut(s)	138, 332
BstFNI	CGCG	1 cut(s)	497
BstKTI	GATC	3 cut(s)	66, 195, 329
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	3 cut(s)	63, 192, 326
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNI	CCWGG	2 cut(s)	258, 541
BstSCI	CCNGG	3 cut(s)	89, 256, 539
BstUI	CGCG	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	10
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	138, 332
BtsIMutI	CAGTG	2 cut(s)	66, 130
CaiI	CAGNNNCTG	1 cut(s)	38
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	253
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	3 cut(s)	6, 55, 190
CviJI	RGCY	9 cut(s)	10, 35, 53, 83, 226, 235, 409, 531, 590
CviKI_1	RGCY	9 cut(s)	10, 35, 53, 83, 226, 235, 409, 531, 590
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	3 cut(s)	201, 471, 558
DpnI	GATC	3 cut(s)	65, 194, 328
DpnII	GATC	3 cut(s)	63, 192, 326
EaeI	YGGCCR	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco130I	CCWWGG	2 cut(s)	220, 389
Eco32I	GATATC	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	256, 539
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	2 cut(s)	220, 389
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	220, 389
Esp3I	CGTCTC	1 cut(s)	348
FaeI	CATG	3 cut(s)	9, 58, 193
FatI	CATG	3 cut(s)	5, 54, 189
FblI	GTMKAC	1 cut(s)	274
FokI	GGATG	2 cut(s)	145, 319
FspBI	CTAG	2 cut(s)	180, 410
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	2 cut(s)	90, 230
HgaI	GACGC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	9, 58, 193
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	2 cut(s)	90, 230
Hpy166II	GTNNAC	2 cut(s)	115, 275
Hpy188I	TCNGA	5 cut(s)	100, 446, 474, 503, 559
Hpy188III	TCNNGA	1 cut(s)	318
Hpy8I	GTNNAC	2 cut(s)	115, 275
Hpy99I	CGWCG	2 cut(s)	352, 497
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	149, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	3 cut(s)	201, 471, 558
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	3 cut(s)	9, 58, 193
Kzo9I	GATC	3 cut(s)	63, 192, 326
LmnI	GCTCC	2 cut(s)	232, 528
MaeI	CTAG	2 cut(s)	180, 410
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	167, 214
MalI	GATC	3 cut(s)	65, 194, 328
MboI	GATC	3 cut(s)	63, 192, 326
MboII	GAAGA	2 cut(s)	330, 364
MlsI	TGGCCA	1 cut(s)	10
MluCI	AATT	5 cut(s)	107, 150, 240, 261, 292
MluNI	TGGCCA	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	4 cut(s)	94, 122, 346, 432
Mox20I	TGGCCA	1 cut(s)	10
Mph1103I	ATGCAT	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	10
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	2 cut(s)	53, 59
Msp20I	TGGCCA	1 cut(s)	10
MspI	CCGG	2 cut(s)	90, 230
MspR9I	CCNGG	3 cut(s)	91, 258, 541
Mva1269I	GAATGC	2 cut(s)	485, 509
MvaI	CCWGG	2 cut(s)	258, 541
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	232
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	3 cut(s)	63, 192, 326
NlaIII	CATG	3 cut(s)	9, 58, 193
NlaIV	GGNNCC	1 cut(s)	234
NsiI	ATGCAT	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PctI	GAATGC	2 cut(s)	485, 509
PfeI	GAWTC	1 cut(s)	385
PflMI	CCANNNNNTGG	2 cut(s)	395, 546
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	256, 539
PspGI	CCWGG	2 cut(s)	256, 539
PspN4I	GGNNCC	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	2 cut(s)	53, 59
SaqAI	TTAA	1 cut(s)	564
Sau3AI	GATC	3 cut(s)	63, 192, 326
ScrFI	CCNGG	3 cut(s)	91, 258, 541
SetI	ASST	9 cut(s)	37, 85, 105, 179, 210, 312, 411, 479, 533
SmiMI	CAYNNNNRTG	2 cut(s)	53, 59
Sse9I	AATT	5 cut(s)	107, 150, 240, 261, 292
SsiI	CCGC	1 cut(s)	497
SspMI	CTAG	2 cut(s)	180, 410
StyD4I	CCNGG	3 cut(s)	89, 256, 539
StyI	CCWWGG	2 cut(s)	220, 389
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	350
TasI	AATT	5 cut(s)	107, 150, 240, 261, 292
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	2 cut(s)	66, 130
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	66, 130
Van91I	CCANNNNNTGG	2 cut(s)	395, 546
XapI	RAATTY	1 cut(s)	261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	274
XspI	CTAG	2 cut(s)	180, 410
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.