Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Reverse (-)

53144781 .. 53146530

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014437

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTGAGCATGGCATGGCCAATCATATTTGTCTTTCCACCACCAGCTTCTCTGTTCGTCACAGCCATGTCAGTGATCAGCTTCGCAGGTTTAGCTAATGCCGGGTTCTCGGAGGTAAGAGGAAAACACCTCCAGTATTCCAAGTTCTGGAAGAATAATAGCAATCAATCCGATTCCCAAACATCAAAGCAAATTTACGTATCTGGAAGAAGAGGCATGCAAATCGCTTATACTCCCGCATTTCTTGCTGGTCTCACATCCTTGGTGTTCTTTCCCCGTTACGATGATATCAGATATCTATTGCTCTCTTCAGCTCTCACCATTCATTTCCTCAAACGACTTTTGGAGGTTCAATTTGTTCACAAGTACAGTGGAGGGATGGCGCTCGATTCTGCGATTCTTATCTCTCTCAGTTACTTCATGTCTACTGTGACTGCGATTTACGCTCAGCACCTTACTATAACCCAAGGGCTACCGGAGCCACCAATTGATTTGAAGTACACTGGAATTCTATTGTTTCTAATTGGGATATCTGGCAATTTCTACCATCACTACCTTCTTTCCCGATTGAGATCATCATCCTCTTCGTCCCCGTCAAACTCAAAAAGCAATGACGATAAGGATTATAAGATTCCAAGGGGTGGAATGTTTGAGCTAGTGGTATGCCCTCACTATCTCTTTGAAATCATAGGATTTGTAGGGTTCTCTTTTATTTCTCAGACTTTGTATGCATTCGCCTTCATGGCCGGAACAGCAATCTATTTGACTGGTAGGAGCTATGCCACTAGGAGATGGTATCTTTCTAAGTTTAAACATTTTCCCCAAAATGTCAAGGCTCTCATTCCATATCTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

286

Amino Acids

32.18

Weight (kDa)

9.67

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	165 - 285	9.7e-26	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
Acc36I	ACCTGC	1 cut(s)	77
AccB7I	CCANNNNNTGG	2 cut(s)	147, 641
AccI	GTMKAC	1 cut(s)	425
AciI	CCGC	1 cut(s)	237
AcoI	YGGCCR	2 cut(s)	17, 744
AcsI	RAATTY	2 cut(s)	192, 507
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	2 cut(s)	368, 500
AfiI	CCNNNNNNNGG	2 cut(s)	147, 641
AgsI	TTSAA	3 cut(s)	353, 496, 683
AluBI	AGCT	6 cut(s)	47, 81, 95, 314, 655, 777
AluI	AGCT	6 cut(s)	47, 81, 95, 314, 655, 777
Alw26I	GTCTC	1 cut(s)	257
AoxI	GGCC	2 cut(s)	17, 744
ApoI	RAATTY	2 cut(s)	192, 507
AspLEI	GCGC	1 cut(s)	385
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	16, 310
BalI	TGGCCA	1 cut(s)	19
BccI	CCATC	3 cut(s)	373, 555, 786
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	2 cut(s)	656, 786
BfoI	RGCGCY	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	77
BglI	GCCNNNNNGGC	1 cut(s)	743
BlpI	GCTNAGC	1 cut(s)	447
Bme1390I	CCNGG	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	199
BsaBI	GATNNNNATC	3 cut(s)	401, 571, 577
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	261, 466, 635
BsaWI	WCCGGW	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 641
Bse1I	ACTGG	3 cut(s)	133, 508, 772
Bse3DI	GCAATG	1 cut(s)	616
Bse8I	GATNNNNATC	3 cut(s)	401, 571, 577
BseDI	CCNNGG	3 cut(s)	261, 466, 635
BseGI	GGATG	3 cut(s)	257, 384, 578
BseJI	GATNNNNATC	3 cut(s)	401, 571, 577
BseLI	CCNNNNNNNGG	2 cut(s)	147, 641
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	3 cut(s)	424, 461, 731
BseNI	ACTGG	3 cut(s)	133, 508, 772
BshFI	GGCC	2 cut(s)	19, 746
BsiSI	CCGG	3 cut(s)	102, 476, 747
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	2 cut(s)	147, 641
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	574
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	2 cut(s)	19, 746
Bso31I	GGTCTC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	75, 572
Bsp1720I	GCTNAGC	1 cut(s)	447
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	19, 746
BspCNI	CTCAG	3 cut(s)	423, 460, 730
BspLI	GGNNCC	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	616
BsrI	ACTGG	3 cut(s)	133, 508, 772
BssECI	CCNNGG	3 cut(s)	261, 466, 635
BssMI	GATC	2 cut(s)	75, 572
BssT1I	CCWWGG	3 cut(s)	261, 466, 635
Bst4CI	ACNGT	2 cut(s)	371, 430
Bst6I	CTCTTC	3 cut(s)	205, 313, 589
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	4 cut(s)	410, 447, 717, 804
BstF5I	GGATG	3 cut(s)	257, 384, 578
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	78, 575
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	2 cut(s)	75, 572
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 245, 443, 478, 743, 752
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	101
BstSNI	TACGTA	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	19, 746
BtsCI	GGATG	3 cut(s)	257, 384, 578
BtsIMutI	CAGTG	3 cut(s)	78, 376, 501
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	1 cut(s)	385
Csp6I	GTAC	2 cut(s)	367, 499
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	6 cut(s)	10, 15, 67, 217, 421, 742
CviQI	GTAC	2 cut(s)	367, 499
DdeI	CTNAG	4 cut(s)	410, 447, 717, 804
DpnI	GATC	2 cut(s)	77, 574
DpnII	GATC	2 cut(s)	75, 572
DraI	TTTAAA	1 cut(s)	811
EaeI	YGGCCR	2 cut(s)	17, 744
Eam1104I	CTCTTC	3 cut(s)	205, 313, 589
EarI	CTCTTC	3 cut(s)	205, 313, 589
Eco105I	TACGTA	1 cut(s)	199
Eco130I	CCWWGG	3 cut(s)	261, 466, 635
Eco31I	GGTCTC	1 cut(s)	257
Eco32I	GATATC	3 cut(s)	289, 296, 531
Eco57I	CTGAAG	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	507
EcoRV	GATATC	3 cut(s)	289, 296, 531
EcoT14I	CCWWGG	3 cut(s)	261, 466, 635
EcoT22I	ATGCAT	1 cut(s)	733
ErhI	CCWWGG	3 cut(s)	261, 466, 635
FaeI	CATG	6 cut(s)	13, 18, 70, 220, 424, 745
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	6 cut(s)	9, 14, 66, 216, 420, 741
FauI	CCCGC	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	425
FokI	GGATG	3 cut(s)	244, 391, 565
FspBI	CTAG	2 cut(s)	656, 786
GlaI	GCGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	19, 746
HapII	CCGG	3 cut(s)	102, 476, 747
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	6 cut(s)	13, 18, 70, 220, 424, 745
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HinfI	GANTC	4 cut(s)	173, 389, 397, 631
HpaII	CCGG	3 cut(s)	102, 476, 747
HphI	GGTGA	2 cut(s)	16, 310
Hpy166II	GTNNAC	3 cut(s)	361, 426, 501
Hpy188I	TCNGA	4 cut(s)	112, 172, 293, 720
Hpy188III	TCNNGA	3 cut(s)	148, 204, 564
Hpy8I	GTNNAC	3 cut(s)	361, 426, 501
HpyAV	CCTTC	2 cut(s)	566, 748
HpyCH4III	ACNGT	2 cut(s)	371, 430
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	220, 731
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 245, 443, 478, 743, 752
HpyF3I	CTNAG	4 cut(s)	410, 447, 717, 804
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	6 cut(s)	13, 18, 70, 220, 424, 745
HspAI	GCGC	1 cut(s)	383
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	75, 572
LmnI	GCTCC	2 cut(s)	478, 774
MaeI	CTAG	2 cut(s)	656, 786
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	4 cut(s)	58, 278, 413, 430
MalI	GATC	2 cut(s)	77, 574
MboI	GATC	2 cut(s)	75, 572
MboII	GAAGA	5 cut(s)	163, 219, 222, 300, 576
MfeI	CAATTG	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	6 cut(s)	192, 353, 486, 507, 522, 538
MluNI	TGGCCA	1 cut(s)	19
MnlI	CCTC	9 cut(s)	106, 113, 140, 206, 340, 341, 368, 592, 678
Mox20I	TGGCCA	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	733
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	1 cut(s)	810
MslI	CAYNNNNRTG	2 cut(s)	65, 71
Msp20I	TGGCCA	1 cut(s)	19
MspI	CCGG	3 cut(s)	102, 476, 747
MspR9I	CCNGG	1 cut(s)	103
MssI	GTTTAAAC	1 cut(s)	811
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	731
MwoI	GCNNNNNNNGC	6 cut(s)	92, 245, 443, 478, 743, 752
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	75, 572
NlaIII	CATG	6 cut(s)	13, 18, 70, 220, 424, 745
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	58, 430
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	1 cut(s)	220
PaeI	GCATGC	1 cut(s)	220
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	4 cut(s)	173, 389, 397, 631
PflMI	CCANNNNNTGG	2 cut(s)	147, 641
PmeI	GTTTAAAC	1 cut(s)	811
Ppu21I	YACGTR	1 cut(s)	199
PsiI	TTATAA	1 cut(s)	627
PspN4I	GGNNCC	1 cut(s)	480
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
RsaI	GTAC	2 cut(s)	368, 500
RsaNI	GTAC	2 cut(s)	367, 499
RseI	CAYNNNNRTG	2 cut(s)	65, 71
SaqAI	TTAA	1 cut(s)	810
Sau3AI	GATC	2 cut(s)	75, 572
ScrFI	CCNGG	1 cut(s)	103
SmiMI	CAYNNNNRTG	2 cut(s)	65, 71
SnaBI	TACGTA	1 cut(s)	199
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	6 cut(s)	192, 353, 486, 507, 522, 538
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	2 cut(s)	656, 786
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	3 cut(s)	261, 466, 635
TaaI	ACNGT	2 cut(s)	371, 430
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	387
TasI	AATT	6 cut(s)	192, 353, 486, 507, 522, 538
TatI	WGTACW	2 cut(s)	366, 498
TfiI	GAWTC	4 cut(s)	173, 389, 397, 631
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TscAI	CASTG	3 cut(s)	78, 376, 508
TseFI	GTSAC	2 cut(s)	58, 430
Tsp45I	GTSAC	2 cut(s)	58, 430
TspDTI	ATGAA	3 cut(s)	314, 409, 730
TspRI	CASTG	3 cut(s)	78, 376, 508
Van91I	CCANNNNNTGG	2 cut(s)	147, 641
XapI	RAATTY	2 cut(s)	192, 507
XceI	RCATGY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	2 cut(s)	656, 786
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.