Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Reverse (-)

9184349 .. 9185635

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G066300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCTAATAGCTTATATTCCGGCATTTCTTGCTGGTGTCGCATCATTTGTGCTTTATCCTCAAGAGAATATCAGAATCTTATTGCTTTGTTCAGCCCTAACCATTCATTTTTTCAAAAGGATTTTTGAGGTTCTGTTTGTTCACAACTATAGTGGAGGGATGATTCTTGATAGTGTGTTGGCCATCTCTCTTAGTTATTTTCTGTCTACCGCAACTGTGACATACGCTCAATACTTAACGCAAGGGTTTCCGGAGCCATCAGTTGATTTGAAGTACCTTGGATGTCTGCTGTTCCTAATAGGGATCTCTGGCAATTTCTATCATCACTACCTTCTTTCTAAAATTCGGTCAAAGGGTGACAAGGATTATAAGATTCCCAAAGGCGGTTTGTTTGGACTCGTGATATGCCCCCACTATCTTTTTGAAATCGTAGGATTTGTGGGGATTTCTCTTATTTCTCAAACTCTCTATGCATTCTCCTTCACCATAGGGTCAGCTTTATACTTGATTGGAAGGAGCTGTGCTACGGGAAGATGGTATCTTTCCAAGTTTGATCATTTTCCCAAAAATGTCAAGGCTCTCATTCCATTTGTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

200

Amino Acids

22.33

Weight (kDa)

9.11

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	2 cut(s)	210, 384
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	342
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	115, 271, 425
AluBI	AGCT	3 cut(s)	11, 497, 519
AluI	AGCT	3 cut(s)	11, 497, 519
AlwI	GGATC	1 cut(s)	311
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	368, 475
BalI	TGGCCA	1 cut(s)	182
BauI	CACGAG	1 cut(s)	398
BccI	CCATC	3 cut(s)	191, 265, 528
BclI	TGATCA	1 cut(s)	553
BfmI	CTRYAG	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	255
BmsI	GCATC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
BseAI	TCCGGA	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	2 cut(s)	165, 287
BseLI	CCNNNNNNNGG	1 cut(s)	383
BshFI	GGCC	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	20, 251
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	182
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	303, 553
BspACI	CCGC	2 cut(s)	210, 384
BspANI	GGCC	1 cut(s)	182
BspEI	TCCGGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	303, 553
BssSI	CACGAG	1 cut(s)	398
BssT1I	CCWWGG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	165, 287
BstKTI	GATC	2 cut(s)	306, 556
BstMBI	GATC	2 cut(s)	303, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 38
BstSFI	CTRYAG	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	165, 287
Csp6I	GTAC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviJI	RGCY	7 cut(s)	11, 95, 182, 256, 497, 519, 578
CviKI_1	RGCY	7 cut(s)	11, 95, 182, 256, 497, 519, 578
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	2 cut(s)	305, 555
DpnII	GATC	2 cut(s)	303, 553
EaeI	YGGCCR	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	277
FaiI	YATR	9 cut(s)	15, 150, 223, 369, 406, 471, 488, 502, 598
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	206
FokI	GGATG	2 cut(s)	172, 294
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	2 cut(s)	20, 251
HinfI	GANTC	4 cut(s)	75, 163, 373, 396
HpaII	CCGG	2 cut(s)	20, 251
HphI	GGTGA	2 cut(s)	368, 475
Hpy166II	GTNNAC	2 cut(s)	142, 207
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	4 cut(s)	62, 167, 251, 400
Hpy8I	GTNNAC	2 cut(s)	142, 207
HpyAV	CCTTC	3 cut(s)	341, 490, 507
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 38
HpyF3I	CTNAG	1 cut(s)	191
Kpn2I	TCCGGA	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	303, 553
LmnI	GCTCC	2 cut(s)	253, 516
LpnPI	CCDG	4 cut(s)	18, 33, 264, 294
LweI	GCATC	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	217, 356
MalI	GATC	2 cut(s)	305, 555
MboI	GATC	2 cut(s)	303, 553
MboII	GAAGA	1 cut(s)	543
MflI	RGATCY	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	2 cut(s)	313, 342
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	390
MnlI	CCTC	3 cut(s)	69, 121, 149
Mox20I	TGGCCA	1 cut(s)	182
Mph1103I	ATGCAT	1 cut(s)	475
MroI	TCCGGA	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	1 cut(s)	236
Msp20I	TGGCCA	1 cut(s)	182
MspI	CCGG	2 cut(s)	20, 251
Mva1269I	GAATGC	1 cut(s)	473
MwoI	GCNNNNNNNGC	2 cut(s)	29, 38
NdeII	GATC	2 cut(s)	303, 553
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	2 cut(s)	217, 356
NsiI	ATGCAT	1 cut(s)	475
PctI	GAATGC	1 cut(s)	473
PfeI	GAWTC	3 cut(s)	75, 163, 373
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	236
Sau3AI	GATC	2 cut(s)	303, 553
SchI	GAGTC	1 cut(s)	390
SetI	ASST	6 cut(s)	13, 132, 279, 333, 499, 521
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	2 cut(s)	313, 342
SsiI	CCGC	2 cut(s)	210, 384
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	217
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	2 cut(s)	313, 342
TfiI	GAWTC	3 cut(s)	75, 163, 373
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TseFI	GTSAC	2 cut(s)	217, 356
Tsp45I	GTSAC	2 cut(s)	217, 356
TspDTI	ATGAA	1 cut(s)	95
XapI	RAATTY	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.