Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Forward (+)

79440492 .. 79443794

Gene Structure 3303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0596400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGGCGCAGCAGTGTAATGAGGAGGAGCAGATGCAGATTGATGAACTGGGCGGCCTCTGATACGAGGAGGAGGAGCAGAAGCCAGCAGCAGGCATTCTCAACCTCCTCCTCCTCCGAAACTGGAAAATCACTCAACCTCTACTCTGCCATCAACCAAGCGCTCCACATCGCCTTGGAAACTGATCCACGTACTTATGTATTTGGAGAAGATGTGGGCTTCGGTGGGGTCTTCCGTTGTACCACAGGCTTGGCTGATCGCTTTGGTAAACAAAGGGTTTTCAATACCCCTCTTTGTGAACAGGGCATTGTAGGATTTGGTATTGGTCTCGCAGCTATGGGCAATCGAGCTGTTGCAGAAATCCAATTTGCAGATTATATTTTTCCCGCTTTTGATCAGATTGTCAATGAAGCTGCAAAATTCAGATACCGTAGTGGAAACCAATTTAACTGTGGAGGCTTAACCATAAGAGCGCCCTATGGAGCTGTAGGCCACGGTGGACATTACCACTCACAATCTCCTGAAGCTTTTTTCTGTCATGCTCCTGGTATCAAAGTGGTCATTCCTAGAAGCCCACGACAAGCAAAAGGCTTATTGCTTTCCTGTATACGCGATCCAAACCCTGTTGTGTTTTTTGAACCAAAGTGGTTGTACAGATTATCAGTAGAAGAGGTTCCTGAGCACGATTTCATGTTGCCGTTATCAGAGGCTGAGGTAATACGAGAGGGCAATGATATAACACTTGTTGGGTGGGGAGCTCAATTATCTGTAATGGAACAGGCCTGTCTAGATGCTGAAAAAGATGGAATTTCATGTGAACTGATAGACCTGCGTACTCTGATACCTTGGGATAAGGACACAGTAGAGGCTTCTGTCAAAAAGACTGGAAGGCTTCTTATTAGTCATGAAGCTCCAGTTACTGGAGGATTTGGTGCCGAAATAGCAGCTTCAATTGTTGAAAGTTGCTTCTTGAGGTTAGAAGCACCAGTCTCAAGAGTATGTGGTCTGGATACCCCCTTCCCTCTTGTGTTTGAACCTTTCTATATGCCCACAAAGAACAAGATATTGGACGCAATTAAAACAACTGTAAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

365

Amino Acids

40.27

Weight (kDa)

7.03

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	46 - 219	6.6e-38	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	236 - 355	1e-36	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	932
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccI	GTMKAC	1 cut(s)	607
AccII	CGCG	1 cut(s)	612
AciI	CCGC	2 cut(s)	53, 387
AclWI	GGATC	2 cut(s)	179, 608
AcsI	RAATTY	2 cut(s)	419, 807
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	4 cut(s)	193, 241, 653, 835
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	91, 920
AgsI	TTSAA	5 cut(s)	283, 638, 951, 959, 1034
AjnI	CCWGG	1 cut(s)	544
AjuI	GAANNNNNNNTTGG	2 cut(s)	1049, 1081
AluBI	AGCT	8 cut(s)	335, 350, 413, 485, 527, 758, 911, 947
AluI	AGCT	8 cut(s)	335, 350, 413, 485, 527, 758, 911, 947
Alw21I	GWGCWC	2 cut(s)	684, 760
Alw26I	GTCTC	2 cut(s)	332, 994
AlwI	GGATC	2 cut(s)	179, 608
AlwNI	CAGNNNCTG	2 cut(s)	710, 920
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	3 cut(s)	54, 490, 780
ApeKI	GCWGC	5 cut(s)	9, 88, 332, 413, 944
ApoI	RAATTY	2 cut(s)	419, 807
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	3 cut(s)	9, 163, 475
BaeI	ACNNNNGTAYC	2 cut(s)	418, 451
BanI	GGYRCC	1 cut(s)	932
BanII	GRGCYC	1 cut(s)	760
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	2 cut(s)	684, 760
BbvCI	CCTCAGC	1 cut(s)	711
BbvI	GCAGC	5 cut(s)	21, 100, 344, 400, 956
BccI	CCATC	2 cut(s)	158, 797
BceAI	ACGGC	1 cut(s)	682
BciT130I	CCWGG	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	1003
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	332, 994
BfaI	CTAG	3 cut(s)	567, 788, 1096
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	2 cut(s)	164, 476
BfuAI	ACCTGC	1 cut(s)	837
BfuI	GTATCC	1 cut(s)	1003
BisI	GCNGC	6 cut(s)	10, 54, 89, 333, 414, 945
BlsI	GCNGC	6 cut(s)	11, 55, 90, 334, 415, 946
Bme1390I	CCNGG	1 cut(s)	546
BmiI	GGNNCC	2 cut(s)	675, 934
BmrFI	CCNGG	1 cut(s)	546
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	2 cut(s)	23, 781
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	2 cut(s)	897, 942
Bpu10I	CCTNAGC	2 cut(s)	678, 711
BpuEI	CTTGAG	2 cut(s)	976, 991
BsaAI	YACGTR	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	174, 493, 845
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 920
Bse1I	ACTGG	6 cut(s)	53, 127, 889, 914, 925, 986
Bse3DI	GCAATG	1 cut(s)	736
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	174, 493, 845
BseLI	CCNNNNNNNGG	2 cut(s)	91, 920
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	2 cut(s)	669, 702
BseNI	ACTGG	6 cut(s)	53, 127, 889, 914, 925, 986
BseRI	GAGGAG	8 cut(s)	37, 40, 82, 85, 88, 97, 100, 103
BseXI	GCAGC	5 cut(s)	21, 100, 344, 400, 956
Bsh1236I	CGCG	1 cut(s)	612
BshFI	GGCC	3 cut(s)	56, 492, 782
BshNI	GGYRCC	1 cut(s)	932
BsiHKAI	GWGCWC	2 cut(s)	684, 760
BslI	CCNNNNNNNGG	2 cut(s)	91, 920
BsmAI	GTCTC	2 cut(s)	332, 994
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	3 cut(s)	56, 492, 782
Bso31I	GGTCTC	1 cut(s)	332
Bsp1286I	GDGCHC	2 cut(s)	684, 760
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	4 cut(s)	184, 256, 394, 613
BspACI	CCGC	2 cut(s)	53, 387
BspANI	GGCC	3 cut(s)	56, 492, 782
BspCNI	CTCAG	2 cut(s)	670, 703
BspFNI	CGCG	1 cut(s)	612
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	2 cut(s)	675, 934
BspMI	ACCTGC	1 cut(s)	837
BspPI	GGATC	2 cut(s)	179, 608
BspT107I	GGYRCC	1 cut(s)	932
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	736
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	6 cut(s)	53, 127, 889, 914, 925, 986
BssECI	CCNNGG	3 cut(s)	174, 493, 845
BssMI	GATC	4 cut(s)	184, 256, 394, 613
BssNAI	GTATAC	1 cut(s)	608
BssT1I	CCWWGG	2 cut(s)	174, 845
Bst1107I	GTATAC	1 cut(s)	608
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	5 cut(s)	431, 452, 497, 862, 1087
Bst6I	CTCTTC	1 cut(s)	663
BstAUI	TGTACA	1 cut(s)	651
BstBAI	YACGTR	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	86, 93
BstDEI	CTNAG	2 cut(s)	678, 711
BstDSI	CCRYGG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	612
BstH2I	RGCGCY	2 cut(s)	164, 476
BstHHI	GCGC	3 cut(s)	9, 163, 475
BstKTI	GATC	4 cut(s)	187, 259, 397, 616
BstMAI	GTCTC	2 cut(s)	332, 994
BstMBI	GATC	4 cut(s)	184, 256, 394, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	941
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	486
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	5 cut(s)	21, 100, 344, 400, 956
BstV2I	GAAGAC	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstZ17I	GTATAC	1 cut(s)	608
BsuI	GTATCC	1 cut(s)	1003
BsuRI	GGCC	3 cut(s)	56, 492, 782
BtgI	CCRYGG	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	837
Cac8I	GCNNGC	2 cut(s)	86, 93
CaiI	CAGNNNCTG	2 cut(s)	710, 920
CciI	TCATGA	1 cut(s)	904
CfoI	GCGC	3 cut(s)	9, 163, 475
CseI	GACGC	1 cut(s)	1079
Csp6I	GTAC	4 cut(s)	192, 240, 652, 834
CviAII	CATG	4 cut(s)	539, 691, 813, 905
CviQI	GTAC	4 cut(s)	192, 240, 652, 834
DdeI	CTNAG	2 cut(s)	678, 711
DpnI	GATC	4 cut(s)	186, 258, 396, 615
DpnII	GATC	4 cut(s)	184, 256, 394, 613
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
Ecl136II	GAGCTC	1 cut(s)	758
Eco130I	CCWWGG	2 cut(s)	174, 845
Eco147I	AGGCCT	1 cut(s)	782
Eco24I	GRGCYC	1 cut(s)	760
Eco31I	GGTCTC	1 cut(s)	332
Eco47III	AGCGCT	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	758
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	174, 845
EcoT38I	GRGCYC	1 cut(s)	760
ErhI	CCWWGG	2 cut(s)	174, 845
FaeI	CATG	4 cut(s)	542, 694, 816, 908
FatI	CATG	4 cut(s)	538, 690, 812, 904
FauI	CCCGC	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	607
Fnu4HI	GCNGC	6 cut(s)	10, 54, 89, 333, 414, 945
FriOI	GRGCYC	1 cut(s)	760
Fsp4HI	GCNGC	6 cut(s)	10, 54, 89, 333, 414, 945
FspBI	CTAG	3 cut(s)	567, 788, 1096
GlaI	GCGC	3 cut(s)	8, 162, 474
GluI	GCNGC	6 cut(s)	10, 54, 89, 333, 414, 945
GsuI	CTGGAG	2 cut(s)	897, 942
HaeII	RGCGCY	2 cut(s)	164, 476
HaeIII	GGCC	3 cut(s)	56, 492, 782
HgaI	GACGC	1 cut(s)	1079
HhaI	GCGC	3 cut(s)	9, 163, 475
Hin1II	CATG	4 cut(s)	542, 694, 816, 908
Hin6I	GCGC	3 cut(s)	7, 161, 473
HinP1I	GCGC	3 cut(s)	7, 161, 473
HindIII	AAGCTT	1 cut(s)	525
Hpy166II	GTNNAC	5 cut(s)	269, 299, 500, 608, 818
Hpy188I	TCNGA	6 cut(s)	61, 118, 399, 425, 706, 840
Hpy188III	TCNNGA	7 cut(s)	521, 677, 788, 905, 970, 993, 1007
Hpy8I	GTNNAC	5 cut(s)	269, 299, 500, 608, 818
HpyAV	CCTTC	2 cut(s)	882, 1027
HpyCH4III	ACNGT	5 cut(s)	431, 452, 497, 862, 1087
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	4 cut(s)	36, 356, 371, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	941
HpyF3I	CTNAG	2 cut(s)	678, 711
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	4 cut(s)	542, 694, 816, 908
HspAI	GCGC	3 cut(s)	7, 161, 473
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	184, 256, 394, 613
LmnI	GCTCC	7 cut(s)	27, 75, 168, 482, 547, 755, 916
Lsp1109I	GCAGC	5 cut(s)	21, 100, 344, 400, 956
LweI	GCATC	2 cut(s)	23, 781
MaeI	CTAG	3 cut(s)	567, 788, 1096
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	916
MalI	GATC	4 cut(s)	186, 258, 396, 615
MboI	GATC	4 cut(s)	184, 256, 394, 613
MboII	GAAGA	3 cut(s)	221, 223, 680
MfeI	CAATTG	1 cut(s)	951
MhlI	GDGCHC	2 cut(s)	684, 760
MluCI	AATT	8 cut(s)	365, 419, 443, 761, 807, 951, 1074, 1090
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	3 cut(s)	447, 461, 1077
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	1 cut(s)	951
Mva1269I	GAATGC	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	1 cut(s)	941
NdeII	GATC	4 cut(s)	184, 256, 394, 613
NlaIII	CATG	4 cut(s)	542, 694, 816, 908
NlaIV	GGNNCC	2 cut(s)	675, 934
PagI	TCATGA	1 cut(s)	904
PceI	AGGCCT	1 cut(s)	782
PctI	GAATGC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	672
PflMI	CCANNNNNTGG	1 cut(s)	920
PkrI	GCNGC	6 cut(s)	11, 55, 90, 334, 415, 946
Ppu21I	YACGTR	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	760
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	675, 934
PsrI	GAACNNNNNNTAC	2 cut(s)	657, 689
PstNI	CAGNNNCTG	2 cut(s)	710, 920
RsaI	GTAC	4 cut(s)	193, 241, 653, 835
RsaNI	GTAC	4 cut(s)	192, 240, 652, 834
SacI	GAGCTC	1 cut(s)	760
SaqAI	TTAA	3 cut(s)	447, 461, 1077
SatI	GCNGC	6 cut(s)	10, 54, 89, 333, 414, 945
Sau3AI	GATC	4 cut(s)	184, 256, 394, 613
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	2 cut(s)	684, 760
SfaNI	GCATC	2 cut(s)	23, 781
SfcI	CTRYAG	1 cut(s)	486
SmlI	CTYRAG	2 cut(s)	970, 991
SmoI	CTYRAG	2 cut(s)	970, 991
Sse9I	AATT	8 cut(s)	365, 419, 443, 761, 807, 951, 1074, 1090
SseBI	AGGCCT	1 cut(s)	782
SsiI	CCGC	2 cut(s)	53, 387
SspMI	CTAG	3 cut(s)	567, 788, 1096
SstI	GAGCTC	1 cut(s)	760
StuI	AGGCCT	1 cut(s)	782
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	2 cut(s)	174, 845
TaaI	ACNGT	5 cut(s)	431, 452, 497, 862, 1087
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	346
TasI	AATT	8 cut(s)	365, 419, 443, 761, 807, 951, 1074, 1090
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	3 cut(s)	447, 461, 1077
Tru9I	TTAA	3 cut(s)	447, 461, 1077
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	5 cut(s)	9, 88, 332, 413, 944
TspDTI	ATGAA	5 cut(s)	59, 423, 679, 801, 921
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	920
XapI	RAATTY	2 cut(s)	419, 807
XbaI	TCTAGA	1 cut(s)	787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	3 cut(s)	567, 788, 1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.