Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Reverse (-)

9206342 .. 9210198

Gene Structure 3857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G066400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTGACATATATTTTCCCACCACCTCCTTCTCTTTTCATCACAGCAATGACAGTGATTAGCTTCACATCATCCTCTAGTCTTGGGCTTTCAGAGCTAAGGGGAAAGCACTTACACTATTCGAAGTTCTGGAATTCCGGTTCTAAAACCTCTGCTGCAAAGAAAATTAAACTATCTAGTAGAACAGGCATGCTAATAGCTTATAATCCGGCATTTCTCGCTGGTGTCGCATCATTTGTGCTTTATCCTCAAGAGAATATCAGAATCTTATTGCTTTGTTCAGCCCTAACCATTCATTTTTTCAAAAGGATCTTTGAGGTTCTGTTTGTTCACAACTATAGTGGAGGGATGAATTTTGATGTTGTGTTGGCCATCTCTCTCAGTTATTTTCTGTCTACCGCAACTGTGACTTACGCTCAATACTTAGCGCAAGGGTTTCCGGAGCCATCAGTTGATTTGAAGTACCTTGGATGTCTGCTGTTTCTAATAGGGATCTCTGGCAATTTCTATCATCACTACCTTCTTTCTAAAATTCGGTCAAAGGGTGACAAGGATTATAAGATTCCCAAAGGCGGTTTGTTTGGACTAGTGATATGCCCCCACTATCTTTTTGAAATCGTAGGATTTGTGGGGATTTCTCTTATTTCTCAAACTCTGTATGCATTCTCCTTCACCATAGGGTCAGCTTTATACTTGATTGGAAGGAGCTGTGCTACGAGAAGATGGTATCTTTCCAAGTTTGATCATTTTCCCAAAAATGTCAAGGCTCTCATTCCATTTGTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

263

Amino Acids

29.32

Weight (kDa)

9.64

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	204, 558
AccI	GTMKAC	1 cut(s)	395
AccIII	TCCGGA	1 cut(s)	439
AciI	CCGC	2 cut(s)	399, 573
AclWI	GGATC	2 cut(s)	317, 500
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	133, 352, 531
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	304, 460, 614
AhlI	ACTAGT	1 cut(s)	586
AloI	GAACNNNNNNTCC	2 cut(s)	124, 156
AluBI	AGCT	5 cut(s)	63, 97, 200, 686, 708
AluI	AGCT	5 cut(s)	63, 97, 200, 686, 708
AlwI	GGATC	2 cut(s)	317, 500
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	3 cut(s)	133, 352, 531
AspLEI	GCGC	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	557, 664
AsuII	TTCGAA	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	3 cut(s)	380, 454, 717
BclI	TGATCA	1 cut(s)	742
BcuI	ACTAGT	1 cut(s)	586
BfaI	CTAG	3 cut(s)	78, 177, 587
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	444
BmsI	GCATC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	466
BsaWI	WCCGGW	2 cut(s)	137, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse3DI	GCAATG	1 cut(s)	54
BseAI	TCCGGA	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	3 cut(s)	71, 354, 476
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	142
BshFI	GGCC	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	138, 209, 440
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	309, 492, 742
BspACI	CCGC	2 cut(s)	399, 573
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	393
BspEI	TCCGGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	444
BspPI	GGATC	2 cut(s)	317, 500
BspT104I	TTCGAA	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	3 cut(s)	309, 492, 742
BssT1I	CCWWGG	1 cut(s)	466
Bst4CI	ACNGT	2 cut(s)	55, 406
BstBI	TTCGAA	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	3 cut(s)	98, 380, 424
BstF5I	GGATG	3 cut(s)	71, 354, 476
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	3 cut(s)	312, 495, 745
BstMBI	GATC	3 cut(s)	309, 492, 742
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 218, 227
BstNSI	RCATGY	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	2 cut(s)	309, 492
BstYI	RGATCY	2 cut(s)	309, 492
BsuRI	GGCC	1 cut(s)	371
BtsCI	GGATG	3 cut(s)	71, 354, 476
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	191
CfoI	GCGC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	463
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	1 cut(s)	190
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	3 cut(s)	98, 380, 424
DpnI	GATC	3 cut(s)	311, 494, 744
DpnII	GATC	3 cut(s)	309, 492, 742
EaeI	YGGCCR	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	466
EcoRI	GAATTC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	466
EcoT22I	ATGCAT	1 cut(s)	664
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	1 cut(s)	193
FatI	CATG	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	3 cut(s)	58, 361, 483
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	3 cut(s)	78, 177, 587
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	3 cut(s)	138, 209, 440
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	264, 562
HpaII	CCGG	3 cut(s)	138, 209, 440
HphI	GGTGA	2 cut(s)	557, 664
Hpy166II	GTNNAC	3 cut(s)	6, 331, 396
Hpy188I	TCNGA	2 cut(s)	94, 263
Hpy188III	TCNNGA	3 cut(s)	130, 251, 440
Hpy8I	GTNNAC	3 cut(s)	6, 331, 396
HpyAV	CCTTC	4 cut(s)	39, 530, 679, 696
HpyCH4III	ACNGT	2 cut(s)	55, 406
HpyCH4V	TGCA	2 cut(s)	158, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 218, 227
HpyF3I	CTNAG	3 cut(s)	98, 380, 424
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	428
Kpn2I	TCCGGA	1 cut(s)	439
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	3 cut(s)	309, 492, 742
LmnI	GCTCC	2 cut(s)	442, 705
LpnPI	CCDG	7 cut(s)	115, 151, 171, 207, 222, 453, 483
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	3 cut(s)	78, 177, 587
MaeIII	GTNAC	2 cut(s)	406, 545
MalI	GATC	3 cut(s)	311, 494, 744
MboI	GATC	3 cut(s)	309, 492, 742
MboII	GAAGA	1 cut(s)	732
MflI	RGATCY	2 cut(s)	309, 492
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	5 cut(s)	133, 165, 352, 502, 531
MluNI	TGGCCA	1 cut(s)	371
MnlI	CCTC	6 cut(s)	36, 85, 160, 258, 310, 338
Mox20I	TGGCCA	1 cut(s)	371
Mph1103I	ATGCAT	1 cut(s)	664
MroI	TCCGGA	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	371
MspI	CCGG	3 cut(s)	138, 209, 440
Mva1269I	GAATGC	1 cut(s)	662
MwoI	GCNNNNNNNGC	3 cut(s)	94, 218, 227
NdeII	GATC	3 cut(s)	309, 492, 742
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	444
NmuCI	GTSAC	2 cut(s)	406, 545
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	193
PctI	GAATGC	1 cut(s)	662
PfeI	GAWTC	2 cut(s)	264, 562
PkrI	GCNGC	1 cut(s)	157
PsiI	TTATAA	2 cut(s)	204, 558
PspN4I	GGNNCC	1 cut(s)	444
PsuI	RGATCY	2 cut(s)	309, 492
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	3 cut(s)	309, 492, 742
SfaNI	GCATC	1 cut(s)	239
SfcI	CTRYAG	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
SpeI	ACTAGT	1 cut(s)	586
SphI	GCATGC	1 cut(s)	193
Sse9I	AATT	5 cut(s)	133, 165, 352, 502, 531
SsiI	CCGC	2 cut(s)	399, 573
SspMI	CTAG	3 cut(s)	78, 177, 587
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	2 cut(s)	55, 406
TaqI	TCGA	1 cut(s)	122
TaqII	GACCGA	1 cut(s)	525
TasI	AATT	5 cut(s)	133, 165, 352, 502, 531
TfiI	GAWTC	2 cut(s)	264, 562
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	2 cut(s)	406, 545
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	2 cut(s)	406, 545
TspDTI	ATGAA	3 cut(s)	28, 284, 365
TspRI	CASTG	1 cut(s)	60
XapI	RAATTY	3 cut(s)	133, 352, 531
XceI	RCATGY	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	3 cut(s)	78, 177, 587
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.