Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Forward (+)

6820943 .. 6822570

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGTGGCCAACCATATTTGTTTTTGCACCACCAGCTTCTATGTTCATCACAGTCATGTCAGTGATCAGCTTCACGGGGTCAGCTAATGCCGGGTTCTCTGAGTTGAGAGGAAAGAACATGCAGTATTCCAAGTTCTGGAAGAATAGCAAACAATCCGATTCTCAAAACTCAAAGCAAATTTACATATCTGGTAGAAGAGGCATGCAAATAGCGTATGCTCCCGCATTTCTTGCAGGGCTCACATCGTTGGTGTTCTTTCCCCATAACGATGATATCAGATATCTTTTGGTCTCTTTAACACTCACTATTCATTTCCTCAAAAGACTTTTGGAGGTTCAATTTGTTCACAAGTACAGTGGAGGGATGATGCTTGGTTCTGTGATTATTATCTCTGCCAGTTACTTCATGTCTATTCTCACTGCGATTTACGCTCAGTACCTTACTACAACCCAAGGGCTCCCTGAGCCAACAATTGATTTAAAGTACACCGGGATCCTATTGTTTCTACTTGGTATATCTGGCAATTTCTACCATCACTACCTTCTTTCCCAACTGAGATCTTCGTCCTCTTCTTCTCCGTCAACCTCAAAACGCGATGATGTTAAGGATTATAAGATTCCAAGGGGTGGATTGTTTGAGCTAGTGGTATGCCCTCACTATCTCTTTGAAATCATTGGATTTGTAGGTTTCTCTTTTATTTCTCAGACCTTGTGTGCATTCACCATGGCCGTCGGAATTGCGATATATTTGACTGGTAGGAGCTATGCTACTAGGAGATGGTATCTTTCTAAGTTTAAGAATTTTCCCCAACATGTCAAGGCTCTCATTCCATACATGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

282

Amino Acids

31.81

Weight (kDa)

9.62

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	129 - 281	1.5e-25	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccB7I	CCANNNNNTGG	2 cut(s)	138, 629
AccII	CGCG	1 cut(s)	597
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	2 cut(s)	490, 503
AcoI	YGGCCR	2 cut(s)	8, 729
AcsI	RAATTY	2 cut(s)	180, 802
AfaI	GTAC	3 cut(s)	356, 440, 488
AfiI	CCNNNNNNNGG	2 cut(s)	138, 629
AflIII	ACRYGT	2 cut(s)	814, 837
AgsI	TTSAA	2 cut(s)	341, 671
AluBI	AGCT	5 cut(s)	38, 72, 86, 643, 765
AluI	AGCT	5 cut(s)	38, 72, 86, 643, 765
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	490, 503
AoxI	GGCC	2 cut(s)	8, 729
ApoI	RAATTY	2 cut(s)	180, 802
AsuC2I	CCSGG	2 cut(s)	94, 493
AsuHPI	GGTGA	1 cut(s)	715
BalI	TGGCCA	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	495
BanII	GRGCYC	2 cut(s)	243, 462
BccI	CCATC	2 cut(s)	543, 774
BceAI	ACGGC	1 cut(s)	716
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	2 cut(s)	94, 493
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	2 cut(s)	644, 774
BglII	AGATCT	1 cut(s)	560
Bme1390I	CCNGG	2 cut(s)	94, 493
BmiI	GGNNCC	2 cut(s)	461, 497
BmrFI	CCNGG	2 cut(s)	94, 493
BmsI	GCATC	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	465
BpuMI	CCSGG	2 cut(s)	94, 493
BsaBI	GATNNNNATC	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	3 cut(s)	454, 623, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 629
Bse1I	ACTGG	2 cut(s)	399, 760
Bse8I	GATNNNNATC	1 cut(s)	389
BseDI	CCNNGG	3 cut(s)	454, 623, 726
BseGI	GGATG	1 cut(s)	372
BseJI	GATNNNNATC	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	138, 629
BseMII	CTCAG	5 cut(s)	93, 449, 456, 548, 719
BseNI	ACTGG	2 cut(s)	399, 760
Bsh1236I	CGCG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	10, 731
BsiSI	CCGG	2 cut(s)	93, 492
BslI	CCNNNNNNNGG	2 cut(s)	138, 629
BsmAI	GTCTC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	2 cut(s)	10, 731
Bso31I	GGTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	243, 462
Bsp143I	GATC	3 cut(s)	66, 495, 560
Bsp19I	CCATGG	1 cut(s)	726
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	10, 731
BspCNI	CTCAG	5 cut(s)	94, 448, 457, 549, 718
BspFNI	CGCG	1 cut(s)	597
BspLI	GGNNCC	2 cut(s)	461, 497
BspPI	GGATC	2 cut(s)	490, 503
BspTNI	GGTCTC	1 cut(s)	298
BsrI	ACTGG	2 cut(s)	399, 760
BssECI	CCNNGG	3 cut(s)	454, 623, 726
BssMI	GATC	3 cut(s)	66, 495, 560
BssT1I	CCWWGG	3 cut(s)	454, 623, 726
Bst4CI	ACNGT	2 cut(s)	55, 359
Bst6I	CTCTTC	2 cut(s)	193, 577
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	6 cut(s)	102, 435, 465, 557, 705, 792
BstDSI	CCRYGG	1 cut(s)	726
BstF5I	GGATG	1 cut(s)	372
BstFNI	CGCG	1 cut(s)	597
BstKTI	GATC	3 cut(s)	69, 498, 563
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	3 cut(s)	66, 495, 560
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 233, 431, 466
BstNSI	RCATGY	4 cut(s)	124, 208, 818, 841
BstSCI	CCNGG	2 cut(s)	92, 491
BstUI	CGCG	1 cut(s)	597
BstX2I	RGATCY	2 cut(s)	495, 560
BstYI	RGATCY	2 cut(s)	495, 560
BsuRI	GGCC	2 cut(s)	10, 731
BtgI	CCRYGG	1 cut(s)	726
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	372
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	3 cut(s)	69, 364, 420
Cac8I	GCNNGC	1 cut(s)	206
Csp6I	GTAC	3 cut(s)	355, 439, 487
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	7 cut(s)	58, 121, 205, 409, 727, 815, 838
CviQI	GTAC	3 cut(s)	355, 439, 487
DdeI	CTNAG	6 cut(s)	102, 435, 465, 557, 705, 792
DpnI	GATC	3 cut(s)	68, 497, 562
DpnII	GATC	3 cut(s)	66, 495, 560
DraI	TTTAAA	1 cut(s)	483
EaeI	YGGCCR	2 cut(s)	8, 729
Eam1104I	CTCTTC	2 cut(s)	193, 577
EarI	CTCTTC	2 cut(s)	193, 577
Eco130I	CCWWGG	3 cut(s)	454, 623, 726
Eco24I	GRGCYC	2 cut(s)	243, 462
Eco31I	GGTCTC	1 cut(s)	298
Eco32I	GATATC	2 cut(s)	277, 284
EcoRV	GATATC	2 cut(s)	277, 284
EcoT14I	CCWWGG	3 cut(s)	454, 623, 726
EcoT38I	GRGCYC	2 cut(s)	243, 462
ErhI	CCWWGG	3 cut(s)	454, 623, 726
FaeI	CATG	7 cut(s)	61, 124, 208, 412, 730, 818, 841
FatI	CATG	7 cut(s)	57, 120, 204, 408, 726, 814, 837
FauI	CCCGC	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	66
FokI	GGATG	1 cut(s)	379
FriOI	GRGCYC	2 cut(s)	243, 462
FspBI	CTAG	2 cut(s)	644, 774
HaeIII	GGCC	2 cut(s)	10, 731
HapII	CCGG	2 cut(s)	93, 492
Hin1II	CATG	7 cut(s)	61, 124, 208, 412, 730, 818, 841
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	2 cut(s)	161, 619
HpaII	CCGG	2 cut(s)	93, 492
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	3 cut(s)	349, 489, 585
Hpy188I	TCNGA	5 cut(s)	103, 160, 281, 708, 737
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	3 cut(s)	349, 489, 585
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	2 cut(s)	55, 359
HpyCH4V	TGCA	5 cut(s)	29, 124, 208, 236, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 233, 431, 466
HpyF3I	CTNAG	6 cut(s)	102, 435, 465, 557, 705, 792
Hsp92II	CATG	7 cut(s)	61, 124, 208, 412, 730, 818, 841
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	66, 495, 560
LmnI	GCTCC	3 cut(s)	226, 465, 762
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	2 cut(s)	644, 774
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	3 cut(s)	68, 497, 562
MboI	GATC	3 cut(s)	66, 495, 560
MboII	GAAGA	5 cut(s)	154, 210, 555, 564, 567
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	2 cut(s)	495, 560
MhlI	GDGCHC	2 cut(s)	243, 462
MlsI	TGGCCA	1 cut(s)	10
MluCI	AATT	6 cut(s)	180, 341, 474, 526, 738, 802
MluNI	TGGCCA	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	8 cut(s)	104, 194, 328, 329, 356, 580, 598, 666
Mox20I	TGGCCA	1 cut(s)	10
MscI	TGGCCA	1 cut(s)	10
MseI	TTAA	4 cut(s)	299, 482, 606, 798
MslI	CAYNNNNRTG	3 cut(s)	56, 62, 270
Msp20I	TGGCCA	1 cut(s)	10
MspI	CCGG	2 cut(s)	93, 492
MspR9I	CCNGG	2 cut(s)	94, 493
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	719
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	4 cut(s)	35, 233, 431, 466
NciI	CCSGG	2 cut(s)	94, 493
NcoI	CCATGG	1 cut(s)	726
NdeII	GATC	3 cut(s)	66, 495, 560
NlaIII	CATG	7 cut(s)	61, 124, 208, 412, 730, 818, 841
NlaIV	GGNNCC	2 cut(s)	461, 497
NspI	RCATGY	4 cut(s)	124, 208, 818, 841
PaeI	GCATGC	1 cut(s)	208
PciI	ACATGT	2 cut(s)	814, 837
PctI	GAATGC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	161, 619
PflMI	CCANNNNNTGG	2 cut(s)	138, 629
PscI	ACATGT	2 cut(s)	814, 837
PsiI	TTATAA	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	461, 497
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
PsuI	RGATCY	2 cut(s)	495, 560
RsaI	GTAC	3 cut(s)	356, 440, 488
RsaNI	GTAC	3 cut(s)	355, 439, 487
RseI	CAYNNNNRTG	3 cut(s)	56, 62, 270
SaqAI	TTAA	4 cut(s)	299, 482, 606, 798
Sau3AI	GATC	3 cut(s)	66, 495, 560
ScrFI	CCNGG	2 cut(s)	94, 493
SduI	GDGCHC	2 cut(s)	243, 462
SfaNI	GCATC	1 cut(s)	360
SmiMI	CAYNNNNRTG	3 cut(s)	56, 62, 270
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	6 cut(s)	180, 341, 474, 526, 738, 802
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	2 cut(s)	644, 774
StyD4I	CCNGG	2 cut(s)	92, 491
StyI	CCWWGG	3 cut(s)	454, 623, 726
TaaI	ACNGT	2 cut(s)	55, 359
TasI	AATT	6 cut(s)	180, 341, 474, 526, 738, 802
TatI	WGTACW	2 cut(s)	354, 486
TfiI	GAWTC	2 cut(s)	161, 619
Tru1I	TTAA	4 cut(s)	299, 482, 606, 798
Tru9I	TTAA	4 cut(s)	299, 482, 606, 798
TscAI	CASTG	3 cut(s)	69, 364, 427
TspDTI	ATGAA	3 cut(s)	37, 302, 397
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	3 cut(s)	69, 364, 427
Van91I	CCANNNNNTGG	2 cut(s)	138, 629
XapI	RAATTY	2 cut(s)	180, 802
XceI	RCATGY	4 cut(s)	124, 208, 818, 841
XspI	CTAG	2 cut(s)	644, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.