Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003365

Physical Location & Seq

Genomic Coordinates Forward (+)

6815090 .. 6816723

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07872.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCGTGGCCGATCATATTTGTCTTTCCGCCACCAGCTTCTGTGTTCGTCATAGCCATGTCAGTCATCAGCTTCACTGGGTTAGCTTATTCCGGATTCTCGGAGGTGAGAGGAAACCATCTGCAGTATTCCAAGTTCTGGAAGATTACCAATAAACCCGCTTCTCAGAAATCAAAGCAAATTTACCTATCTGGTAGAAGAGGCATGCAGTTCATTTATGCTCCTGCGTTTCTTGCTGGGCTCACATCTCTGGTGTTCTTTCCCCATAACGATGATATCAGATATCTATTGCTCTCCTCAGCTCTCACCCTTCATTTCCTCAAACGACTTTTGGAGGTTCAATTTGTTCACAAGTACAGTAGTGGGATGGCGCTTGATTCTGCGATTCCTATCGTTCTCAGTTACTTCATGGCTACTGTCACTGCAATTTACACGCAGCACCTTACTATAACCCAAGGGCTACCAGAGCCACCAATTGATTTGAAGTACCCTGGAATTGTGTTGTTTCTACTTGGGATAACTGGTAATTTCTACCATCATTACCTTCTTTCCCAACTGAGATCATCATCCTCTTCGTCTCCGTCAAGCTCACAAAGCAATAACGATGAGGATTATAAGATTCCAAAGGGTGGATTGTTTGAGCTAGTGATATGCCCTCACTATCTATTTGAAATCATAGCATTTGTAGGGTTCTCTTTTATTTCTCAGACCTTGTATGCGTTTGCTTTCTTGGCCGGAACAGTATTCTATTTGACTGGTAGGAGCTATGCTACTAGGAGGTGGTATCTTTCTAAGTTTAAGAATTTTCCCCAAAATGTCAAGGCTCTCATTCCATATGTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

282

Amino Acids

31.8

Weight (kDa)

9.54

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	164 - 281	5.8e-25	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16010
fragaria_vesca	FvH4_2g07871 FvH4_2g07871 FvH4_2g07872 FvH4_2g07900
malus_domestica	MD02G1261000.v1.1 MD02G1265600.v1.1 MD07G1060000.v1.1
prunus_persica	Prupe.2G066100_v2.0.a1 Prupe.2G066100_v2.0.a1 Prupe.2G066300_v2.0.a1 Prupe.2G066400_v2.0.a1 Prupe.2G066400_v2.0.a1
pyrus_communis	pycom02g22310 pycom02g22710
rosa_chinensis	RchiOBHm_Chr6g0262341 RchiOBHm_Chr6g0262351
rosa_laevigata	RLG00000014437 RLG00000014438
rosa_multiflora	Rmu_sc0001544.1_g000021 Rmu_sc0001544.1_g000027 Rmu_sc0028284.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207990
rosa_rugosa	Rorug05G0596300 Rorug05G0596400 Rorug05G0596400
rosa_samantha	Rh6AG116700 Rh6AG117000 Rh6BG110800 Rh6CG108300 Rh6CG108400 Rh6CG108600 Rh6DG098800
rosa_wichuraiana	Rw6G010130 Rw6G010150 Rw6G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccB7I	CCANNNNNTGG	2 cut(s)	138, 629
AccIII	TCCGGA	1 cut(s)	92
AciI	CCGC	2 cut(s)	29, 159
AcoI	YGGCCR	2 cut(s)	8, 732
AcsI	RAATTY	2 cut(s)	180, 802
AfaI	GTAC	2 cut(s)	356, 488
AfiI	CCNNNNNNNGG	2 cut(s)	138, 629
AgsI	TTSAA	3 cut(s)	341, 484, 671
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	7 cut(s)	38, 72, 86, 302, 588, 643, 765
AluI	AGCT	7 cut(s)	38, 72, 86, 302, 588, 643, 765
Alw26I	GTCTC	1 cut(s)	582
AlwNI	CAGNNNCTG	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	92
AoxI	GGCC	2 cut(s)	8, 732
ApeKI	GCWGC	1 cut(s)	436
ApoI	RAATTY	2 cut(s)	180, 802
AspLEI	GCGC	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	118, 298
BanII	GRGCYC	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	3 cut(s)	126, 361, 543
BciT130I	CCWGG	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	582
BfaI	CTAG	2 cut(s)	644, 774
BfmI	CTRYAG	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	374
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
Bme1390I	CCNGG	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	492
BmrI	ACTGGG	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	298
BsaBI	GATNNNNATC	2 cut(s)	389, 565
BsaJI	CCNNGG	2 cut(s)	454, 490
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 629
Bse1I	ACTGG	3 cut(s)	82, 526, 760
Bse8I	GATNNNNATC	2 cut(s)	389, 565
BseAI	TCCGGA	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	454, 490
BseGI	GGATG	2 cut(s)	372, 566
BseJI	GATNNNNATC	2 cut(s)	389, 565
BseLI	CCNNNNNNNGG	2 cut(s)	138, 629
BseMII	CTCAG	5 cut(s)	179, 312, 412, 548, 719
BseNI	ACTGG	3 cut(s)	82, 526, 760
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	448
BseYI	CCCAGC	1 cut(s)	236
BshFI	GGCC	2 cut(s)	10, 734
BsiSI	CCGG	2 cut(s)	93, 735
BslI	CCNNNNNNNGG	2 cut(s)	138, 629
BsmAI	GTCTC	1 cut(s)	582
BsmBI	CGTCTC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	10, 734
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp13I	TCCGGA	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	12, 560
BspACI	CCGC	2 cut(s)	29, 159
BspANI	GGCC	2 cut(s)	10, 734
BspCNI	CTCAG	5 cut(s)	178, 311, 411, 549, 718
BspEI	TCCGGA	1 cut(s)	92
BspMAI	CTGCAG	1 cut(s)	126
BsrI	ACTGG	3 cut(s)	82, 526, 760
BssECI	CCNNGG	2 cut(s)	454, 490
BssMI	GATC	2 cut(s)	12, 560
BssT1I	CCWWGG	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	359, 418, 742
Bst6I	CTCTTC	2 cut(s)	193, 577
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	6 cut(s)	165, 298, 398, 557, 705, 792
BstF5I	GGATG	2 cut(s)	372, 566
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	2 cut(s)	15, 563
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	2 cut(s)	12, 560
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 466, 594, 731
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	448
BsuRI	GGCC	2 cut(s)	10, 734
BtsCI	GGATG	2 cut(s)	372, 566
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	75, 420
Cac8I	GCNNGC	1 cut(s)	206
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	355, 487
CviAII	CATG	3 cut(s)	58, 205, 409
CviQI	GTAC	2 cut(s)	355, 487
DdeI	CTNAG	6 cut(s)	165, 298, 398, 557, 705, 792
DpnI	GATC	2 cut(s)	14, 562
DpnII	GATC	2 cut(s)	12, 560
EaeI	YGGCCR	2 cut(s)	8, 732
Eam1104I	CTCTTC	2 cut(s)	193, 577
EarI	CTCTTC	2 cut(s)	193, 577
EciI	GGCGGA	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	243
Eco32I	GATATC	2 cut(s)	277, 284
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	2 cut(s)	277, 284
EcoT14I	CCWWGG	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	582
FaeI	CATG	3 cut(s)	61, 208, 412
FatI	CATG	3 cut(s)	57, 204, 408
FauI	CCCGC	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	835
Fnu4HI	GCNGC	1 cut(s)	437
FokI	GGATG	2 cut(s)	379, 553
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	437
FspBI	CTAG	2 cut(s)	644, 774
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	437
GsaI	CCCAGC	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	2 cut(s)	10, 734
HapII	CCGG	2 cut(s)	93, 735
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	3 cut(s)	61, 208, 412
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HinfI	GANTC	4 cut(s)	96, 377, 385, 619
HpaII	CCGG	2 cut(s)	93, 735
HphI	GGTGA	2 cut(s)	118, 298
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	4 cut(s)	103, 168, 281, 708
Hpy188III	TCNNGA	2 cut(s)	93, 139
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	2 cut(s)	320, 554
HpyCH4III	ACNGT	3 cut(s)	359, 418, 742
HpyCH4V	TGCA	3 cut(s)	124, 208, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 466, 594, 731
HpyF3I	CTNAG	6 cut(s)	165, 298, 398, 557, 705, 792
Hsp92II	CATG	3 cut(s)	61, 208, 412
HspAI	GCGC	1 cut(s)	371
Kpn2I	TCCGGA	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	12, 560
LmnI	GCTCC	2 cut(s)	226, 762
Lsp1109I	GCAGC	1 cut(s)	448
MaeI	CTAG	2 cut(s)	644, 774
MaeIII	GTNAC	2 cut(s)	401, 418
MalI	GATC	2 cut(s)	14, 562
MboI	GATC	2 cut(s)	12, 560
MboII	GAAGA	3 cut(s)	154, 210, 564
MfeI	CAATTG	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	7 cut(s)	180, 341, 426, 474, 495, 526, 802
MroI	TCCGGA	1 cut(s)	92
MseI	TTAA	1 cut(s)	798
MslI	CAYNNNNRTG	2 cut(s)	56, 270
MspI	CCGG	2 cut(s)	93, 735
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	4 cut(s)	233, 466, 594, 731
NdeI	CATATG	1 cut(s)	835
NdeII	GATC	2 cut(s)	12, 560
NlaIII	CATG	3 cut(s)	61, 208, 412
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	208
PaeI	GCATGC	1 cut(s)	208
PfeI	GAWTC	4 cut(s)	96, 377, 385, 619
PflMI	CCANNNNNTGG	2 cut(s)	138, 629
PkrI	GCNGC	1 cut(s)	438
PsiI	TTATAA	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	490
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
PstI	CTGCAG	1 cut(s)	126
PstNI	CAGNNNCTG	1 cut(s)	41
RsaI	GTAC	2 cut(s)	356, 488
RsaNI	GTAC	2 cut(s)	355, 487
RseI	CAYNNNNRTG	2 cut(s)	56, 270
SaqAI	TTAA	1 cut(s)	798
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	2 cut(s)	12, 560
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	2 cut(s)	56, 270
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	7 cut(s)	180, 341, 426, 474, 495, 526, 802
SsiI	CCGC	2 cut(s)	29, 159
SspMI	CTAG	2 cut(s)	644, 774
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	3 cut(s)	359, 418, 742
TasI	AATT	7 cut(s)	180, 341, 426, 474, 495, 526, 802
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	4 cut(s)	96, 377, 385, 619
Tru1I	TTAA	1 cut(s)	798
Tru9I	TTAA	1 cut(s)	798
TscAI	CASTG	2 cut(s)	82, 427
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	436
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	202, 302, 397
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	2 cut(s)	82, 427
Van91I	CCANNNNNTGG	2 cut(s)	138, 629
XapI	RAATTY	2 cut(s)	180, 802
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	2 cut(s)	644, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.