Rorug06G0186500

exocyst complex component

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
29565124 .. 29565720
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0186500.1

Sequence Viewer

Length: 306 bp
ATGGAAGAGCATAACTCATCAGTCAAATCTGGGCAGGAGATGAGTGAGAAGATAGCTGTTGTTTCTTATGATGCTTACAAGACCAAGCCAAATCTGGGCAGCAGTTTTCTTGAATCAGCAATGAGGGCTTTGTTCAAGTGCTTGGGTGTTAACGTCGAAGCTCCTTCAAACACACAAGTTTCTGATCAATCACCAGACCAAGTTGATGATCTACCAGCAAAGACAGCAGTGGATCAAACCTCAGGCGGAGTTGTTATCGTTGCAAGGAGTACCTTAGGCACAGGGAGTGGTGCACAGATAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

10.58

Weight (kDa)

4.75

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 246
AclWI GGATC 1 cut(s) 240
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 3 cut(s) 113, 136, 168
AluBI AGCT 2 cut(s) 56, 161
AluI AGCT 2 cut(s) 56, 161
Alw21I GWGCWC 1 cut(s) 295
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 1 cut(s) 240
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 183
AxyI CCTNAGG 2 cut(s) 241, 274
BaeGI GKGCMC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 111
BclI TGATCA 1 cut(s) 184
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
BmsI GCATC 1 cut(s) 61
BplI GAGNNNNNCTC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse21I CCTNAGG 2 cut(s) 241, 274
Bse3DI GCAATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 3 cut(s) 184, 208, 232
BspACI CCGC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 254
BspPI GGATC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 126
BssMI GATC 3 cut(s) 184, 208, 232
BstDEI CTNAG 2 cut(s) 241, 274
BstKTI GATC 3 cut(s) 187, 211, 235
BstMBI GATC 3 cut(s) 184, 208, 232
BstMWI GCNNNNNNNGC 2 cut(s) 125, 224
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 111
Bsu36I CCTNAGG 2 cut(s) 241, 274
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Csp6I GTAC 1 cut(s) 270
CviJI RGCY 4 cut(s) 56, 88, 128, 161
CviKI_1 RGCY 4 cut(s) 56, 88, 128, 161
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 2 cut(s) 241, 274
DpnI GATC 3 cut(s) 186, 210, 234
DpnII GATC 3 cut(s) 184, 208, 232
EciI GGCGGA 1 cut(s) 261
Eco81I CCTNAGG 2 cut(s) 241, 274
FaiI YATR 2 cut(s) 12, 69
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 1 cut(s) 113
HpaI GTTAAC 1 cut(s) 151
HphI GGTGA 1 cut(s) 183
Hpy166II GTNNAC 2 cut(s) 151, 293
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 2 cut(s) 151, 293
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 263, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 224
HpyF3I CTNAG 2 cut(s) 241, 274
HpySE526I ACGT 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 184
KspAI GTTAAC 1 cut(s) 151
Kzo9I GATC 3 cut(s) 184, 208, 232
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 7 cut(s) 15, 20, 80, 207, 228, 228, 267
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 61
MaeII ACGT 1 cut(s) 153
MalI GATC 3 cut(s) 186, 210, 234
MboI GATC 3 cut(s) 184, 208, 232
MboII GAAGA 2 cut(s) 17, 61
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 1 cut(s) 301
MnlI CCTC 2 cut(s) 117, 250
MseI TTAA 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 125, 224
NdeII GATC 3 cut(s) 184, 208, 232
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 101
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 3 cut(s) 184, 208, 232
SduI GDGCHC 1 cut(s) 295
SetI ASST 5 cut(s) 58, 156, 163, 242, 275
SfaNI GCATC 1 cut(s) 61
Sse9I AATT 1 cut(s) 301
SsiI CCGC 1 cut(s) 246
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 156
TasI AATT 1 cut(s) 301
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 234
TseI GCWGC 1 cut(s) 99
TspRI CASTG 1 cut(s) 234
VneI GTGCAC 1 cut(s) 291
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.