Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009430

Physical Location & Seq

Genomic Coordinates Reverse (-)

32617062 .. 32620545

Gene Structure 3484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0204200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGTTGGGAACGGAAGAAAGGTTTCAGAACCATTTGAATAGTTGCACAGTTAAAATGGATTATGATGCTACTCATGAAGCAAGTGATTTTGGCAACGATGTTAATATTGACGTCCCAGTAGTAGAATCAAATAGAGTTGATAGTCTTGAAAGGGTTTCATTTGAGGGCATGGTTATAAGAGAATTACAAAATGTGGGCGAGGTTATAACTCGAGTTGAGTTGGATCTAGCATGTGCTTCTGAGAAGTTGCTTAATTTAATTGGTTTTATGATGCATGTGGCAACCAAGGAGAGTGATTTTGATGCCTTTATATCCAAGGAAGAGAAGACAATAGTTGGTTCTGTCGAGAAGGCTCTAGAGTTCACTCTCTTATCTGGAATATTAGACTCTGAGGTAGGTGAATTGGATAAGGTCATAGCTTTAATTCAAACGGAGATTACGGCTGCTCAAGAGCTACTATCTTTATATACATACTTAGGAGAAACATTTACAGTAATGGAAGAAAAGCTGCAGGATTCTGAGCAGTCTTTGAAGCAGTTGCAAGAACAAATCTCTGAAATCAGGATGCAATCTCTGAAGTTCCAGAGAATCCTTTCATGCTCCGATGGAGAAGAAAATTGGAATAGCAACAAAGGAGTACTGGGCCATTTAGAAGATGATATATTTTCAAGCAAGAATGTACTAATGAAAATGCGAACTGTTAAACATCAGAGACATATTTTGAGGATGCTAGAGAAATCTTTGGCAAGCGAAATGGATCTTGAAAAGAAATTGACTGAATCAAAACACATTGAAGAGGATCTAAAACTGAGACTACTCTCTTCAGAACAAGAGGCATATTGCATGGAGGATGAAATCAGTGAAATGAGAAATGTTATTACATATCTGAAAGAAAAAGAAGCAAAAGTTGAAAATAGGGCTCAAAATGCAGAAGCCAAATATAAATTATTAGCAGAGACCAACACAGAACTTAATGAAGAGCTCAGACTTCTTAAGACACAGTTAACAGAATTGACATGCGGTTGCAACATGCCGTGGCATCTGCTGAAGCTAGCACTAAATGAGGAAGTAAACTTTCTGATGGATAGATTGAAACGCGTGGAGGCAGCTTTCCATCAAGCTAAGGAAGCAAAATTAGCTACTGCAACTGATATTGCACTCCGGTCAAAAGACGTTATTACAGACTTGATAGTGCAACTTGCTTTTAAAGACAGCACTTTCATAAGCAGTTTCCAATCCTCAGAGCTCCATCCAATTGTGCGGTCAAATGATGGCGTGGCACTGACAGCATGGCCTACTTTTCAGCTGTTCAAGTTGAAGAGCGTCCCCCTTTCCGATATTTCTCTCCGGTCACTCAACTCTCCCCTCCATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008970 GO:0009507 GO:0009536 GO:0016298 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047714 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

458

Amino Acids

52.13

Weight (kDa)

4.94

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIT1_2_N	PF26581	63 - 200	1.8e-54	WIT1/2, N-terminal helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06800 AT1G06800 AT2G30550 AT2G30550
fragaria_vesca	FvH4_2g22500
malus_domestica	MD05G1205500.v1.1 MD10G1192500.v1.1
prunus_persica	Prupe.8G231900_v2.0.a1
pyrus_communis	pycom10g16620
rosa_chinensis	RchiOBHm_Chr6g0289521
rosa_laevigata	RLG00000012295
rosa_multiflora	Rmu_co8503037.1_g000001 Rmu_sc0001527.1_g000050 Rmu_sc0002417.1_g000004
rosa_roxburghii	Rroxscaffold_7G00177880 Rroxscaffold_7G00179120
rosa_rugosa	Rorug06G0204200
rosa_samantha	Rh6AG315800 Rh6BG322400 Rh6CG328800 Rh6DG314600
rosa_wichuraiana	Rw6G027220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	176, 206
AatII	GACGTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	1098
AciI	CCGC	2 cut(s)	1020, 1261
AclWI	GGATC	3 cut(s)	231, 765, 807
AcuI	CTGAAG	3 cut(s)	596, 807, 1067
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	2 cut(s)	639, 681
AflII	CTTAAG	1 cut(s)	992
AflIII	ACRYGT	1 cut(s)	1096
Alw21I	GWGCWC	2 cut(s)	984, 1248
Alw26I	GTCTC	3 cut(s)	706, 805, 950
AlwI	GGATC	3 cut(s)	231, 765, 807
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	2 cut(s)	643, 1292
ApeKI	GCWGC	3 cut(s)	443, 508, 1106
Asp700I	GAANNNNTTC	2 cut(s)	21, 592
AspS9I	GGNCC	1 cut(s)	643
AsuHPI	GGTGA	1 cut(s)	410
AsuNHI	GCTAGC	1 cut(s)	1051
AvaI	CYCGRG	1 cut(s)	210
BanII	GRGCYC	3 cut(s)	922, 984, 1248
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	2 cut(s)	984, 1248
BbvI	GCAGC	3 cut(s)	430, 495, 1118
BccI	CCATC	5 cut(s)	599, 1075, 1122, 1257, 1265
BceAI	ACGGC	2 cut(s)	456, 1018
BcoDI	GTCTC	3 cut(s)	706, 805, 950
BfaI	CTAG	4 cut(s)	227, 356, 731, 1052
BfmI	CTRYAG	2 cut(s)	509, 1373
BfrI	CTTAAG	1 cut(s)	992
BisI	GCNGC	3 cut(s)	444, 509, 1107
BlsI	GCNGC	3 cut(s)	445, 510, 1108
BmcAI	AGTACT	1 cut(s)	639
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	643
BmrI	ACTGGG	2 cut(s)	110, 650
BmsI	GCATC	6 cut(s)	55, 261, 292, 555, 717, 1048
BmtI	GCTAGC	1 cut(s)	1055
BmuI	ACTGGG	2 cut(s)	110, 650
BpiI	GAAGAC	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	1122
BpuEI	CTTGAG	1 cut(s)	432
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	950
BsaJI	CCNNGG	3 cut(s)	285, 315, 1034
BsaWI	WCCGGW	2 cut(s)	1161, 1347
Bse1I	ACTGG	2 cut(s)	116, 645
BseDI	CCNNGG	3 cut(s)	285, 315, 1034
BseGI	GGATG	4 cut(s)	570, 732, 856, 1249
BseMII	CTCAG	6 cut(s)	231, 381, 510, 800, 997, 1254
BseNI	ACTGG	2 cut(s)	116, 645
BseXI	GCAGC	3 cut(s)	430, 495, 1118
Bsh1236I	CGCG	1 cut(s)	1098
BshFI	GGCC	2 cut(s)	645, 1294
BsiHKAI	GWGCWC	2 cut(s)	984, 1248
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	1162, 1348
BslFI	GGGAC	2 cut(s)	98, 1310
BsmAI	GTCTC	3 cut(s)	706, 805, 950
BsmFI	GGGAC	2 cut(s)	98, 1310
BsnI	GGCC	2 cut(s)	645, 1294
Bso31I	GGTCTC	1 cut(s)	950
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	3 cut(s)	922, 984, 1248
Bsp143I	GATC	3 cut(s)	223, 757, 799
BspACI	CCGC	2 cut(s)	1020, 1261
BspANI	GGCC	2 cut(s)	645, 1294
BspCNI	CTCAG	6 cut(s)	232, 382, 511, 801, 996, 1253
BspFNI	CGCG	1 cut(s)	1098
BspHI	TCATGA	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	513
BspOI	GCTAGC	1 cut(s)	1055
BspPI	GGATC	3 cut(s)	231, 765, 807
BspQI	GCTCTTC	2 cut(s)	972, 1313
BspTI	CTTAAG	1 cut(s)	992
BspTNI	GGTCTC	1 cut(s)	950
BsrI	ACTGG	2 cut(s)	116, 645
BssECI	CCNNGG	3 cut(s)	285, 315, 1034
BssMI	GATC	3 cut(s)	223, 757, 799
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	2 cut(s)	285, 315
Bst4CI	ACNGT	4 cut(s)	49, 493, 700, 1002
Bst6I	CTCTTC	5 cut(s)	315, 789, 826, 972, 1313
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	992
BstC8I	GCNNGC	2 cut(s)	748, 1053
BstDEI	CTNAG	8 cut(s)	240, 390, 475, 519, 809, 983, 1122, 1240
BstDSI	CCRYGG	1 cut(s)	1034
BstF5I	GGATG	4 cut(s)	570, 732, 856, 1249
BstFNI	CGCG	1 cut(s)	1098
BstKTI	GATC	3 cut(s)	226, 760, 802
BstMAI	GTCTC	3 cut(s)	706, 805, 950
BstMBI	GATC	3 cut(s)	223, 757, 799
BstMWI	GCNNNNNNNGC	4 cut(s)	926, 1127, 1136, 1286
BstNSI	RCATGY	4 cut(s)	234, 278, 1020, 1033
BstSFI	CTRYAG	2 cut(s)	509, 1373
BstUI	CGCG	1 cut(s)	1098
BstV1I	GCAGC	3 cut(s)	430, 495, 1118
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	3 cut(s)	223, 757, 799
BstYI	RGATCY	3 cut(s)	223, 757, 799
BsuRI	GGCC	2 cut(s)	645, 1294
BtgI	CCRYGG	1 cut(s)	1034
BtsCI	GGATG	4 cut(s)	570, 732, 856, 1249
BtsIMutI	CAGTG	2 cut(s)	865, 1280
Cac8I	GCNNGC	2 cut(s)	748, 1053
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	643
CseI	GACGC	1 cut(s)	1312
Csp6I	GTAC	2 cut(s)	638, 680
CviAII	CATG	9 cut(s)	74, 169, 231, 275, 597, 844, 1017, 1030, 1290
CviQI	GTAC	2 cut(s)	638, 680
DdeI	CTNAG	8 cut(s)	240, 390, 475, 519, 809, 983, 1122, 1240
DpnI	GATC	3 cut(s)	225, 759, 801
DpnII	GATC	3 cut(s)	223, 757, 799
DraI	TTTAAA	1 cut(s)	1207
Eam1104I	CTCTTC	5 cut(s)	315, 789, 826, 972, 1313
EarI	CTCTTC	5 cut(s)	315, 789, 826, 972, 1313
Ecl136II	GAGCTC	2 cut(s)	982, 1246
Eco130I	CCWWGG	2 cut(s)	285, 315
Eco24I	GRGCYC	3 cut(s)	922, 984, 1248
Eco31I	GGTCTC	1 cut(s)	950
Eco53kI	GAGCTC	2 cut(s)	982, 1246
Eco57I	CTGAAG	3 cut(s)	596, 807, 1067
Eco88I	CYCGRG	1 cut(s)	210
EcoICRI	GAGCTC	2 cut(s)	982, 1246
EcoT14I	CCWWGG	2 cut(s)	285, 315
EcoT22I	ATGCAT	1 cut(s)	276
EcoT38I	GRGCYC	3 cut(s)	922, 984, 1248
ErhI	CCWWGG	2 cut(s)	285, 315
FaeI	CATG	9 cut(s)	77, 172, 234, 278, 600, 847, 1020, 1033, 1293
FaqI	GGGAC	2 cut(s)	98, 1310
FatI	CATG	9 cut(s)	73, 168, 230, 274, 596, 843, 1016, 1029, 1289
Fnu4HI	GCNGC	3 cut(s)	444, 509, 1107
FokI	GGATG	4 cut(s)	577, 739, 863, 1236
FriOI	GRGCYC	3 cut(s)	922, 984, 1248
Fsp4HI	GCNGC	3 cut(s)	444, 509, 1107
FspBI	CTAG	4 cut(s)	227, 356, 731, 1052
GluI	GCNGC	3 cut(s)	444, 509, 1107
HaeIII	GGCC	2 cut(s)	645, 1294
HapII	CCGG	2 cut(s)	1162, 1348
HgaI	GACGC	1 cut(s)	1312
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	9 cut(s)	77, 172, 234, 278, 600, 847, 1020, 1033, 1293
HincII	GTYRAC	1 cut(s)	1005
HindII	GTYRAC	1 cut(s)	1005
HinfI	GANTC	5 cut(s)	125, 386, 515, 588, 779
HpaI	GTTAAC	1 cut(s)	1005
HpaII	CCGG	2 cut(s)	1162, 1348
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	3 cut(s)	363, 1005, 1072
Hpy188III	TCNNGA	9 cut(s)	74, 146, 346, 356, 375, 449, 562, 583, 761
Hpy8I	GTNNAC	3 cut(s)	363, 1005, 1072
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	4 cut(s)	49, 493, 700, 1002
HpyCH4IV	ACGT	2 cut(s)	111, 1173
HpyF10VI	GCNNNNNNNGC	4 cut(s)	926, 1127, 1136, 1286
HpyF3I	CTNAG	8 cut(s)	240, 390, 475, 519, 809, 983, 1122, 1240
HpySE526I	ACGT	2 cut(s)	111, 1173
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	9 cut(s)	77, 172, 234, 278, 600, 847, 1020, 1033, 1293
KspAI	GTTAAC	1 cut(s)	1005
Kzo9I	GATC	3 cut(s)	223, 757, 799
LguI	GCTCTTC	2 cut(s)	972, 1313
LmnI	GCTCC	2 cut(s)	605, 1251
LpnPI	CCDG	8 cut(s)	129, 360, 497, 547, 596, 626, 1175, 1361
Lsp1109I	GCAGC	3 cut(s)	430, 495, 1118
LweI	GCATC	6 cut(s)	55, 261, 292, 555, 717, 1048
MaeI	CTAG	4 cut(s)	227, 356, 731, 1052
MaeII	ACGT	2 cut(s)	111, 1173
MaeIII	GTNAC	1 cut(s)	1350
MalI	GATC	3 cut(s)	225, 759, 801
MboI	GATC	3 cut(s)	223, 757, 799
MfeI	CAATTG	1 cut(s)	1254
MflI	RGATCY	3 cut(s)	223, 757, 799
MhlI	GDGCHC	3 cut(s)	922, 984, 1248
MluI	ACGCGT	1 cut(s)	1096
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	201
Mph1103I	ATGCAT	1 cut(s)	276
MroXI	GAANNNNTTC	2 cut(s)	21, 592
MspA1I	CMGCKG	1 cut(s)	1306
MspCI	CTTAAG	1 cut(s)	992
MspI	CCGG	2 cut(s)	1162, 1348
MunI	CAATTG	1 cut(s)	1254
MvnI	CGCG	1 cut(s)	1098
MwoI	GCNNNNNNNGC	4 cut(s)	926, 1127, 1136, 1286
NdeII	GATC	3 cut(s)	223, 757, 799
NheI	GCTAGC	1 cut(s)	1051
NlaIII	CATG	9 cut(s)	77, 172, 234, 278, 600, 847, 1020, 1033, 1293
NmuCI	GTSAC	1 cut(s)	1350
NsiI	ATGCAT	1 cut(s)	276
NspI	RCATGY	4 cut(s)	234, 278, 1020, 1033
PaeR7I	CTCGAG	1 cut(s)	210
PagI	TCATGA	1 cut(s)	73
PciSI	GCTCTTC	2 cut(s)	972, 1313
PdmI	GAANNNNTTC	2 cut(s)	21, 592
PfeI	GAWTC	4 cut(s)	125, 515, 588, 779
PkrI	GCNGC	3 cut(s)	445, 510, 1108
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PsiI	TTATAA	2 cut(s)	176, 206
Psp124BI	GAGCTC	2 cut(s)	984, 1248
PspPI	GGNCC	1 cut(s)	643
PspXI	VCTCGAGB	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	513
PsuI	RGATCY	3 cut(s)	223, 757, 799
PvuII	CAGCTG	1 cut(s)	1306
RsaI	GTAC	2 cut(s)	639, 681
RsaNI	GTAC	2 cut(s)	638, 680
SacI	GAGCTC	2 cut(s)	984, 1248
SapI	GCTCTTC	2 cut(s)	972, 1313
SatI	GCNGC	3 cut(s)	444, 509, 1107
Sau3AI	GATC	3 cut(s)	223, 757, 799
Sau96I	GGNCC	1 cut(s)	643
ScaI	AGTACT	1 cut(s)	639
SchI	GAGTC	1 cut(s)	380
SduI	GDGCHC	3 cut(s)	922, 984, 1248
SfaNI	GCATC	6 cut(s)	55, 261, 292, 555, 717, 1048
SfcI	CTRYAG	2 cut(s)	509, 1373
Sfr274I	CTCGAG	1 cut(s)	210
SlaI	CTCGAG	1 cut(s)	210
SmlI	CTYRAG	3 cut(s)	210, 447, 992
SmoI	CTYRAG	3 cut(s)	210, 447, 992
SsiI	CCGC	2 cut(s)	1020, 1261
SspI	AATATT	2 cut(s)	106, 381
SspMI	CTAG	4 cut(s)	227, 356, 731, 1052
SstI	GAGCTC	2 cut(s)	984, 1248
StyI	CCWWGG	2 cut(s)	285, 315
TaaI	ACNGT	4 cut(s)	49, 493, 700, 1002
TaiI	ACGT	2 cut(s)	114, 1176
TaqI	TCGA	2 cut(s)	211, 345
TatI	WGTACW	2 cut(s)	637, 679
TfiI	GAWTC	4 cut(s)	125, 515, 588, 779
TscAI	CASTG	2 cut(s)	865, 1287
TseFI	GTSAC	1 cut(s)	1350
TseI	GCWGC	3 cut(s)	443, 508, 1106
Tsp45I	GTSAC	1 cut(s)	1350
TspDTI	ATGAA	7 cut(s)	90, 147, 585, 701, 867, 990, 1210
TspGWI	ACGGA	2 cut(s)	26, 446
TspRI	CASTG	2 cut(s)	865, 1287
Vha464I	CTTAAG	1 cut(s)	992
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	4 cut(s)	234, 278, 1020, 1033
XhoI	CTCGAG	1 cut(s)	210
XmnI	GAANNNNTTC	2 cut(s)	21, 592
XspI	CTAG	4 cut(s)	227, 356, 731, 1052
ZraI	GACGTC	1 cut(s)	112
ZrmI	AGTACT	1 cut(s)	639
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.