Rorug06G0221300

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
35445012 .. 35447148
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0221300.1

Sequence Viewer

Length: 360 bp
ATGTGCTATTTTCAAAGGGCCATTGATCAAGCACTTCTCTTCCCTTGTCAAGTGGACGAGGGCGGCATCTGCCAAAACACCCCAATCAGATGGTATTGTGTGGGGAAGCCTCCTGACTGGCAAGATTTTGCGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCGGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGACAAACACAAGGGTTGCCAGCTCTCTTGGAACATTTCTCTTAACCCAGATTTCATTGATCTTTTTCGACATGCTTAATGTCTACAGGTATAACCAACATTTTCAGATTCAATTGGTGTGA

Protein Analysis

119

Amino Acids

13.42

Weight (kDa)

8.42

Isoelectric Point (pI)

8.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022796)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0291721
rosa_multiflora Rmu_sc0002226.1_g000024
rosa_rugosa Rorug06G0221300
rosa_samantha Rh4BG109000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 321
AciI CCGC 3 cut(s) 63, 131, 191
AgsI TTSAA 2 cut(s) 14, 350
AluBI AGCT 2 cut(s) 209, 261
AluI AGCT 2 cut(s) 209, 261
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 200, 203, 206
AspS9I GGNCC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 187, 215, 218
BccI CCATC 1 cut(s) 84
BclI TGATCA 1 cut(s) 25
BfmI CTRYAG 2 cut(s) 201, 322
BisI GCNGC 4 cut(s) 64, 201, 204, 207
BlsI GCNGC 4 cut(s) 65, 202, 205, 208
BmgT120I GGNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 3 cut(s) 187, 215, 218
BshFI GGCC 1 cut(s) 20
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 25, 297
BspACI CCGC 3 cut(s) 63, 131, 191
BspANI GGCC 1 cut(s) 20
BspMAI CTGCAG 1 cut(s) 205
BsrI ACTGG 1 cut(s) 122
BssMI GATC 2 cut(s) 25, 297
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 259
BstKTI GATC 2 cut(s) 28, 300
BstMBI GATC 2 cut(s) 25, 297
BstMWI GCNNNNNNNGC 6 cut(s) 69, 197, 206, 215, 224, 233
BstNSI RCATGY 1 cut(s) 313
BstSFI CTRYAG 2 cut(s) 201, 322
BstV1I GCAGC 3 cut(s) 187, 215, 218
BstXI CCANNNNNNTGG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 18
CviAII CATG 2 cut(s) 214, 310
CviJI RGCY 6 cut(s) 20, 109, 209, 218, 236, 261
CviKI_1 RGCY 6 cut(s) 20, 109, 209, 218, 236, 261
DpnI GATC 2 cut(s) 27, 299
DpnII GATC 2 cut(s) 25, 297
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
FaeI CATG 2 cut(s) 217, 313
FaiI YATR 3 cut(s) 215, 311, 330
FatI CATG 2 cut(s) 213, 309
FauI CCCGC 1 cut(s) 184
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 4 cut(s) 64, 201, 204, 207
Fsp4HI GCNGC 4 cut(s) 64, 201, 204, 207
GluI GCNGC 4 cut(s) 64, 201, 204, 207
HaeIII GGCC 1 cut(s) 20
Hin1II CATG 2 cut(s) 217, 313
HinfI GANTC 1 cut(s) 346
Hpy166II GTNNAC 2 cut(s) 55, 322
Hpy188I TCNGA 2 cut(s) 89, 345
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 2 cut(s) 55, 322
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 197, 206, 215, 224, 233
Hsp92II CATG 2 cut(s) 217, 313
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 2 cut(s) 25, 297
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 6 cut(s) 103, 126, 134, 271, 299, 310
Lsp1109I GCAGC 3 cut(s) 187, 215, 218
LweI GCATC 1 cut(s) 75
MalI GATC 2 cut(s) 27, 299
MboI GATC 2 cut(s) 25, 297
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 350
MluCI AATT 1 cut(s) 350
MnlI CCTC 2 cut(s) 52, 120
MseI TTAA 2 cut(s) 281, 315
MunI CAATTG 1 cut(s) 350
MwoI GCNNNNNNNGC 6 cut(s) 69, 197, 206, 215, 224, 233
NdeII GATC 2 cut(s) 25, 297
NlaIII CATG 2 cut(s) 217, 313
NspI RCATGY 1 cut(s) 313
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 4 cut(s) 65, 202, 205, 208
PspPI GGNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 205
SaqAI TTAA 2 cut(s) 281, 315
SatI GCNGC 4 cut(s) 64, 201, 204, 207
Sau3AI GATC 2 cut(s) 25, 297
Sau96I GGNCC 1 cut(s) 18
SetI ASST 3 cut(s) 211, 263, 329
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 2 cut(s) 201, 322
Sse9I AATT 1 cut(s) 350
SsiI CCGC 3 cut(s) 63, 131, 191
TaqI TCGA 1 cut(s) 306
TasI AATT 1 cut(s) 350
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 281, 315
Tru9I TTAA 2 cut(s) 281, 315
TseI GCWGC 3 cut(s) 200, 203, 206
TspDTI ATGAA 2 cut(s) 163, 282
XceI RCATGY 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.