Rh4BG109000

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
18496363 .. 18496782
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG109000.1

Sequence Viewer

Length: 420 bp
ATGGAGCTTGTTTTAGTGGCATTGGTTTTGACTGATGTGATTTCAAATTCTTTCATATATAGCTTCTTGGTGGATGGCATTCCCATTAGACAGTTCAAGAACCTGGAGTCCTTTGGAATTCCATTTCCCAAATACCAGCCTATGAGGTTATACTCCAGTCTCTGGAATGCGGATAACTGGGCTACAAGAGGTGGACTGGAGAAAATAGATTGGACTCAAGCACCCTTTACTGCATCTTACAGGAACTTCAATGCCAATTCTGATTCCCATGGAGCGTGGTACTGGAAGAAGGTGGATTATTCGGGTAAAGGGCAGATACAATGGGTGCAAAATAACTATATGATCTACAACTACTGCACAGACTCGAAGCGATTCCCCCTAGGGTTTGCTCCTGAATGTTATTTGACTCATCTGTCCTAG

Protein Analysis

139

Amino Acids

16.19

Weight (kDa)

7.73

Isoelectric Point (pI)

24.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 21 - 72 1.9e-14 Glycosyl hydrolases family 16
XET_C PF06955 91 - 133 8e-18 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022796)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0291721
rosa_multiflora Rmu_sc0002226.1_g000024
rosa_rugosa Rorug06G0221300
rosa_samantha Rh4BG109000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 412
AccB7I CCANNNNNTGG 1 cut(s) 162
AciI CCGC 1 cut(s) 170
AcsI RAATTY 2 cut(s) 46, 117
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 3 cut(s) 45, 97, 250
AjnI CCWGG 1 cut(s) 102
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 2 cut(s) 7, 63
AluI AGCT 2 cut(s) 7, 63
Alw26I GTCTC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 162
ApoI RAATTY 2 cut(s) 46, 117
Asp700I GAANNNNTTC 1 cut(s) 371
AspA2I CCTAGG 1 cut(s) 379
AvrII CCTAGG 1 cut(s) 379
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 2 cut(s) 380, 418
BlnI CCTAGG 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 242
BmuI ACTGGG 1 cut(s) 187
BpmI CTGGAG 3 cut(s) 125, 139, 218
BpuEI CTTGAG 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 268, 379
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 4 cut(s) 156, 182, 201, 287
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 268, 379
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 162
BseNI ACTGG 4 cut(s) 156, 182, 201, 287
BsgI GTGCAG 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 164
BsmI GAATGC 2 cut(s) 78, 172
Bsp143I GATC 1 cut(s) 342
Bsp19I CCATGG 1 cut(s) 268
BspACI CCGC 1 cut(s) 170
BsrI ACTGG 4 cut(s) 156, 182, 201, 287
BssECI CCNNGG 2 cut(s) 268, 379
BssMI GATC 1 cut(s) 342
BssT1I CCWWGG 2 cut(s) 268, 379
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 342
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 162
Csp6I GTAC 1 cut(s) 280
CviAII CATG 1 cut(s) 269
CviJI RGCY 4 cut(s) 7, 63, 139, 182
CviKI_1 RGCY 4 cut(s) 7, 63, 139, 182
CviQI GTAC 1 cut(s) 280
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
DrdI GACNNNNNNGTC 1 cut(s) 412
DseDI GACNNNNNNGTC 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 268, 379
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 2 cut(s) 268, 379
ErhI CCWWGG 2 cut(s) 268, 379
FaeI CATG 1 cut(s) 272
FaiI YATR 8 cut(s) 56, 58, 60, 143, 151, 270, 339, 341
FatI CATG 1 cut(s) 268
FokI GGATG 1 cut(s) 86
FspBI CTAG 2 cut(s) 380, 418
GsuI CTGGAG 3 cut(s) 125, 139, 218
Hin1II CATG 1 cut(s) 272
HinfI GANTC 6 cut(s) 107, 214, 263, 362, 372, 406
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 3 cut(s) 97, 163, 392
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 233, 328, 357
Hsp92II CATG 1 cut(s) 272
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 3 cut(s) 4, 272, 394
LweI GCATC 1 cut(s) 242
MaeI CTAG 2 cut(s) 380, 418
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 1 cut(s) 298
MluCI AATT 3 cut(s) 46, 117, 256
MlyI GAGTC 4 cut(s) 116, 208, 356, 400
MnlI CCTC 2 cut(s) 138, 182
MroXI GAANNNNTTC 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 2 cut(s) 78, 172
MvaI CCWGG 1 cut(s) 104
NcoI CCATGG 1 cut(s) 268
NdeII GATC 1 cut(s) 342
NlaIII CATG 1 cut(s) 272
PctI GAATGC 2 cut(s) 78, 172
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 2 cut(s) 263, 372
PflMI CCANNNNNTGG 1 cut(s) 162
PleI GAGTC 4 cut(s) 115, 208, 356, 400
PpsI GAGTC 4 cut(s) 115, 208, 356, 400
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 162
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
Sau3AI GATC 1 cut(s) 342
SchI GAGTC 4 cut(s) 116, 208, 356, 400
ScrFI CCNGG 1 cut(s) 104
SetI ASST 6 cut(s) 9, 65, 105, 149, 193, 294
SfaNI GCATC 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 3 cut(s) 46, 117, 256
SsiI CCGC 1 cut(s) 170
SspMI CTAG 2 cut(s) 380, 418
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 2 cut(s) 268, 379
TaaI ACNGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 365
TasI AATT 3 cut(s) 46, 117, 256
TfiI GAWTC 2 cut(s) 263, 372
TspDTI ATGAA 1 cut(s) 43
Van91I CCANNNNNTGG 1 cut(s) 162
XapI RAATTY 2 cut(s) 46, 117
XmaJI CCTAGG 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 2 cut(s) 380, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.