Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014544

Physical Location & Seq

Genomic Coordinates Reverse (-)

45830886 .. 45837453

Gene Structure 6568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0307400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGATGTTCGGTTGGCTTAAGGGTGTGAAGTCTCTCGGCAGTTTTAAGTGGCGCGGTGAATCATCTTTGACAGCATCATTGCTTAGAGATGCAGCTCCTGAGGTTGAATTATCTGCGTATGGAAGGGCACCGAGTCCAAGTCCCGGCAGCGAGAGCCCAACTGGGCTTCTTAATGGCGAGAGTGTAAATGTGGAACCAATTGCTGATTTGGACCTGTTCTTTGAAAGGCTGTACAGTTACTATTGTGATAAAGGCCTCTGGTGTATCGTCATAAAGTGGATAGTAGAGCTTCTGAGCTTGGGTTTCACCATATGCTTCTCTGGGTTCTTCTTATTATTTGTTGATTGGAATGGTCTTCGTAATGCGAAGTGTGGGATGGATGCATTTCAATCTGGAACTAAGCCCTGTGATCTTGCTACTGAAGCTCTTCATCAGCACCCATTAAGCCCTCTGACACTTTCCAAAGCTATAATTGTTGGATATTTGTTTATATTTTCCATTTACTGGATCTTCTGTTTTCTGAGGTTTTTCGCTCAACTACGAGATACTTTGGGAGTCCGTCACTTCTATCACCACAGCCTCCATGTCACGGACAATGAAATTAAGACCATGCCATGGGCATCAATTCTGGAGAAGGTTGTCCAGCTACAAAGATCACAGCAGCTTTGTGTGGTCAAAGATCTTTCTGCTCATGATGTGGTTATGCGTTTGATGCGGAAGGAGAACTATTTAATTGGAATGCTTAACAAGGGTGTTCTTGCTTTTCCAATCTCACAGTGGGTCCCAGGTAGTGGCCCAACTGTTAAATTGCCCTCGGATGGAAAGCGAGAGCGTCTAATTCTGACAAAAACCCTTGAGTGGACTTTAAATTGGTGCATACTGCAGAGCATGTTTGATCGGAATTTTTGTGTTAGAAGGGACTTTGTATCAAATCCAAGAACATTACAGAAAAGACTTATGGTAGTTGGGCTTGCTATGCTTCTCCTTTCGCCATTTCTTGTCATATTCATGCTGGTATATCTCTTCTTAAGGCATGCAGAACAATTTTATAATCATCCGAGCACTGCTTCTTCTAGAAGATGGTCAAATTTGTCAAGGTGGATGTTTAGGGAATTCAATGAGGTGGACCACTTGTTCAAACACAGAATCAATAGCAGTTTGGTACATGCTTCTGAATATTTGAAGCAATTTCCTTCTCCTATTATATCCATTATAGCAAAATTCATCTCTTTTGTTTCTGGTGGCTTTGCTGCTATTTTAATCATCATTGCGTTCCTAGAGGAATCTCTGCTAGAGGGCCATATATTTGGTCGCAACTTGTTCTGGTATGCTGCTGTTTTTGGAACTATAACAGCTATTAGCAGGGCTGCAATTAGTGATGAGCTTCTGGTCCTTGATCCAGAGGGGGCAATGTCTATGGTGGTTCAATACACACATTATATGCCCAAGACATGGCGTGGCAAAGAGAATACTGAGGGTGTTCGGATAGAGTTTGAATCCCTGTTTCAGTATACTGGAATGATGCTACTTGAGGAGATGGCCTCTATCTTTCTCACTCCATATTTACTTATATTTGTTGTTCCAAAGAGGGTGGATGACATTTTAGAGTTTATTGCAGAATTCACAATTGATGTTGAAGGTGTTGGTCATGTTTGCAGTTTTAGTGCCTTTGATTTTCAAAAACATGGTAATAGGAACTATGGGTCACCTTTCAATGTACCTCGCTCACAGAGGAGTTCTCAGGGTAAAATGGAGAAATCATTCTTGAGTTTCCAGAGTAGCTATCCTTCGTGGGACCCAAATGCACAAGGACATCAGTTTCTTTTAAATCTTAGAACTTTCAGGGAGCAAAAGTTGCAGGGACAAGAAACTAGACATGCATATTCTCCTCAGAGAATGTCACCGGGTAGCCCCAGTTTGAGAACTTTTGGTGGCATGAACTATCTCTCAAGGGAAAGGCTACATCATAATCCTAGAACTGGCTATCAATTAGGTTCTCTGTGGTTAATTGATGCAGATCAGAAGAATCATCCATACCTTCTTGATTGGTATTACACCTCTGCCCCACACCATACAACGAGTTACAAGAGGGATATTCTGGAAGAACCATTTGAAGGTGCTGAGCAGCAGTCTGTGGATTGGATGCCACCCAACTTCACAGACAATGGAGCAAGATTTGAAGATCTTTGGGACCATCATTATGAGGATCGATCACGGTCTTATCTGGGGGCTTCTACATCAGCCCCTTTCCCCCGAGATAATGTACTTCAGCATCACGATACTGGTAATCTGGCACACCAAACTCGGAGTCACTGGTGGGCTAGAACTGGCCCTCATGGTACACAGCCCCAGTCAAGTTTTCTTGATCCTCCACAGTCAAGTTTCCTTGAGCCTCCTAATTTCACGTGCCGGCCTTCAGATAATTTTTATGAAAATTTCTCAGATAGAAGCTTAGAGGAACAGGCTGAAGAACAGGAACAGGAACGGAATGAACGACAGGATGCAGAACAAGATGTAGAGCAGGAACAGAACTTGGATTGGAGGAGGAACTACCATAACTTATCTCGAACTACTTATATGGATGACTTAGACTTAGAGGCAGGAAAATTTAATCTTCATTTTGATGATGTATATAGTAGACGTCCCGAAACCCCCAAAGATATAACCACCAAACTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

893

Amino Acids

103.26

Weight (kDa)

6.21

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG9	PF04109	64 - 558	1.1e-166	Autophagy protein ATG9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27620
fragaria_vesca	FvH4_2g39380
malus_domestica	MD08G1026100.v1.1 MD15G1022800.v1.1
prunus_persica	Prupe.1G374800_v2.0.a1
pyrus_communis	pycom08g02020 pycom15g01910
rosa_chinensis	RchiOBHm_Chr6g0301621
rosa_laevigata	RLG00000011238
rosa_multiflora	Rmu_ssc0000452.1_g000013
rosa_roxburghii	Rroxscaffold_7G00166590
rosa_rugosa	Rorug06G0307400
rosa_samantha	Rh6AG420200 Rh6BG426400 Rh6CG433200 Rh6DG419700
rosa_wichuraiana	Rw6G036330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1050
AatII	GACGTC	1 cut(s)	2644
AccB1I	GGYRCC	1 cut(s)	127
AccB7I	CCANNNNNTGG	4 cut(s)	504, 615, 791, 1452
AccI	GTMKAC	2 cut(s)	1511, 2638
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	54, 715
AclWI	GGATC	4 cut(s)	515, 1391, 2214, 2360
AcsI	RAATTY	7 cut(s)	901, 1087, 1112, 1220, 1619, 2434, 2606
AcuI	CTGAAG	5 cut(s)	441, 2252, 2400, 2487, 2660
AcvI	CACGTG	1 cut(s)	2406
AcyI	GRCGYC	1 cut(s)	2641
AfaI	GTAC	5 cut(s)	233, 1164, 1719, 2265, 2341
AflII	CTTAAG	2 cut(s)	17, 1027
AjnI	CCWGG	1 cut(s)	784
AloI	GAACNNNNNNTCC	2 cut(s)	1118, 1150
Alw21I	GWGCWC	1 cut(s)	1064
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	4 cut(s)	515, 1391, 2214, 2360
AlwNI	CAGNNNCTG	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	2253
AoxI	GGCC	6 cut(s)	253, 793, 1297, 1539, 2329, 2411
ApeKI	GCWGC	7 cut(s)	92, 147, 661, 1250, 1331, 1367, 2125
ApoI	RAATTY	7 cut(s)	901, 1087, 1112, 1220, 1619, 2434, 2606
ArsI	GACNNNNNNTTYG	4 cut(s)	203, 235, 2293, 2325
Asp700I	GAANNNNTTC	2 cut(s)	426, 1760
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	9 cut(s)	211, 781, 794, 1126, 1297, 1390, 1795, 2191, 2330
AsuC2I	CCSGG	2 cut(s)	144, 1905
AsuHPI	GGTGA	5 cut(s)	68, 298, 563, 1698, 1893
AvaI	CYCGRG	1 cut(s)	2253
AvaII	GGWCC	6 cut(s)	211, 781, 1126, 1390, 1795, 2191
AxyI	CCTNAGG	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	158
BarI	GAAGNNNNNNTAC	2 cut(s)	1771, 1803
BbrPI	CACGTG	1 cut(s)	2406
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	1064
BbvI	GCAGC	7 cut(s)	104, 159, 673, 1237, 1318, 1354, 2137
BccI	CCATC	5 cut(s)	370, 812, 1074, 1531, 2202
BciT130I	CCWGG	1 cut(s)	786
BcnI	CCSGG	2 cut(s)	144, 1905
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	6 cut(s)	1074, 1277, 1292, 1872, 1974, 2322
BfmI	CTRYAG	1 cut(s)	881
BfrI	CTTAAG	2 cut(s)	17, 1027
BglII	AGATCT	2 cut(s)	679, 2182
BisI	GCNGC	7 cut(s)	93, 148, 662, 1251, 1332, 1368, 2126
BlpI	GCTNAGC	1 cut(s)	2121
BlsI	GCNGC	7 cut(s)	94, 149, 663, 1252, 1333, 1369, 2127
Bme1390I	CCNGG	3 cut(s)	144, 786, 1905
Bme18I	GGWCC	6 cut(s)	211, 781, 1126, 1390, 1795, 2191
BmeT110I	CYCGRG	1 cut(s)	2253
BmgT120I	GGNCC	9 cut(s)	211, 781, 794, 1126, 1297, 1390, 1795, 2191, 2330
BmiI	GGNNCC	7 cut(s)	129, 195, 782, 783, 1796, 1797, 2192
BmrFI	CCNGG	3 cut(s)	144, 786, 1905
BmrI	ACTGGG	3 cut(s)	171, 1908, 2344
BmuI	ACTGGG	3 cut(s)	171, 1908, 2344
BpiI	GAAGAC	1 cut(s)	347
BplI	GAGNNNNNCTC	4 cut(s)	1526, 1558, 1723, 1755
BpmI	CTGGAG	1 cut(s)	650
Bpu1102I	GCTNAGC	1 cut(s)	2121
BpuEI	CTTGAG	5 cut(s)	875, 1550, 1786, 1933, 2408
BpuMI	CCSGG	2 cut(s)	144, 1905
Bsa29I	ATCGAT	1 cut(s)	2209
BsaAI	YACGTR	1 cut(s)	2406
BsaBI	GATNNNNATC	1 cut(s)	2016
BsaHI	GRCGYC	1 cut(s)	2641
BsaJI	CCNNGG	3 cut(s)	614, 784, 813
BsaXI	ACNNNNNCTCC	2 cut(s)	1838, 1868
Bse118I	RCCGGY	1 cut(s)	2409
Bse1I	ACTGG	9 cut(s)	166, 509, 1519, 1914, 1984, 2287, 2318, 2332, 2350
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	3 cut(s)	77, 1266, 1416
Bse8I	GATNNNNATC	1 cut(s)	2016
BseBI	CCWGG	1 cut(s)	786
BseCI	ATCGAT	1 cut(s)	2209
BseDI	CCNNGG	3 cut(s)	614, 784, 813
BseJI	GATNNNNATC	1 cut(s)	2016
BseMI	GCAATG	3 cut(s)	77, 1266, 1416
BseMII	CTCAG	8 cut(s)	90, 284, 512, 1464, 1754, 1904, 2112, 2454
BseNI	ACTGG	9 cut(s)	166, 509, 1519, 1914, 1984, 2287, 2318, 2332, 2350
BseRI	GAGGAG	4 cut(s)	1547, 1747, 1878, 2557
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	7 cut(s)	104, 159, 673, 1237, 1318, 1354, 2137
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	6 cut(s)	255, 795, 1299, 1541, 2331, 2413
BshNI	GGYRCC	1 cut(s)	127
BshVI	ATCGAT	1 cut(s)	2209
BsiHKAI	GWGCWC	1 cut(s)	1064
BsiHKCI	CYCGRG	1 cut(s)	2253
BsiSI	CCGG	3 cut(s)	144, 1904, 2410
BslFI	GGGAC	7 cut(s)	126, 767, 932, 1808, 1875, 2204, 2628
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	7 cut(s)	126, 767, 932, 1808, 1875, 2204, 2628
BsmI	GAATGC	1 cut(s)	744
BsnI	GGCC	6 cut(s)	255, 795, 1299, 1541, 2331, 2413
BsoBI	CYCGRG	1 cut(s)	2253
Bsp1286I	GDGCHC	3 cut(s)	130, 158, 1064
Bsp1407I	TGTACA	1 cut(s)	231
Bsp1720I	GCTNAGC	1 cut(s)	2121
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	2 cut(s)	54, 715
BspANI	GGCC	6 cut(s)	255, 795, 1299, 1541, 2331, 2413
BspCNI	CTCAG	8 cut(s)	91, 285, 513, 1465, 1753, 1903, 2113, 2453
BspDI	ATCGAT	1 cut(s)	2209
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	7 cut(s)	129, 195, 782, 783, 1796, 1797, 2192
BspMAI	CTGCAG	1 cut(s)	885
BspPI	GGATC	4 cut(s)	515, 1391, 2214, 2360
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	127
BspTI	CTTAAG	2 cut(s)	17, 1027
BsrDI	GCAATG	3 cut(s)	77, 1266, 1416
BsrFI	RCCGGY	1 cut(s)	2409
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	9 cut(s)	166, 509, 1519, 1914, 1984, 2287, 2318, 2332, 2350
BssAI	RCCGGY	1 cut(s)	2409
BssECI	CCNNGG	3 cut(s)	614, 784, 813
BssNAI	GTATAC	1 cut(s)	1512
BssNI	GRCGYC	1 cut(s)	2641
BssT1I	CCWWGG	1 cut(s)	614
Bst1107I	GTATAC	1 cut(s)	1512
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	5 cut(s)	236, 777, 802, 2217, 2376
Bst6I	CTCTTC	2 cut(s)	432, 1028
BstACI	GRCGYC	1 cut(s)	2641
BstAFI	CTTAAG	2 cut(s)	17, 1027
BstAPI	GCANNNNNTGC	1 cut(s)	1855
BstAUI	TGTACA	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	2406
BstC8I	GCNNGC	3 cut(s)	972, 1035, 2411
BstDSI	CCRYGG	1 cut(s)	614
BstEII	GGTNACC	1 cut(s)	1704
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	5 cut(s)	153, 422, 712, 976, 1855
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	4 cut(s)	892, 1037, 1169, 1880
BstPI	GGTNACC	1 cut(s)	1704
BstSCI	CCNGG	3 cut(s)	142, 784, 1903
BstSFI	CTRYAG	1 cut(s)	881
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	7 cut(s)	104, 159, 673, 1237, 1318, 1354, 2137
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	3 cut(s)	507, 679, 2182
BstXI	CCANNNNNNTGG	1 cut(s)	1307
BstYI	RGATCY	3 cut(s)	507, 679, 2182
BstZ17I	GTATAC	1 cut(s)	1512
Bsu15I	ATCGAT	1 cut(s)	2209
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	6 cut(s)	255, 795, 1299, 1541, 2331, 2413
BsuTUI	ATCGAT	1 cut(s)	2209
BtgI	CCRYGG	1 cut(s)	614
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	3 cut(s)	782, 1062, 2311
Cac8I	GCNNGC	3 cut(s)	972, 1035, 2411
CaiI	CAGNNNCTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	2409
Cfr13I	GGNCC	9 cut(s)	211, 781, 794, 1126, 1297, 1390, 1795, 2191, 2330
ClaI	ATCGAT	1 cut(s)	2209
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	5 cut(s)	232, 1163, 1718, 2264, 2340
CspCI	CAANNNNNGTGG	2 cut(s)	1572, 1607
CviQI	GTAC	5 cut(s)	232, 1163, 1718, 2264, 2340
DraI	TTTAAA	2 cut(s)	867, 1827
Eam1104I	CTCTTC	2 cut(s)	432, 1028
EarI	CTCTTC	2 cut(s)	432, 1028
Eco130I	CCWWGG	1 cut(s)	614
Eco147I	AGGCCT	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	6 cut(s)	211, 781, 1126, 1390, 1795, 2191
Eco57I	CTGAAG	5 cut(s)	441, 2252, 2400, 2487, 2660
Eco72I	CACGTG	1 cut(s)	2406
Eco81I	CCTNAGG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	2253
Eco91I	GGTNACC	1 cut(s)	1704
EcoO109I	RGGNCCY	2 cut(s)	781, 1795
EcoO65I	GGTNACC	1 cut(s)	1704
EcoRI	GAATTC	2 cut(s)	1112, 1619
EcoRII	CCWGG	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	614
EcoT22I	ATGCAT	2 cut(s)	385, 1882
EcoT38I	GRGCYC	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	614
FaqI	GGGAC	7 cut(s)	126, 767, 932, 1808, 1875, 2204, 2628
FauNDI	CATATG	1 cut(s)	311
FblI	GTMKAC	2 cut(s)	1511, 2638
Fnu4HI	GCNGC	7 cut(s)	93, 148, 662, 1251, 1332, 1368, 2126
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	7 cut(s)	93, 148, 662, 1251, 1332, 1368, 2126
FspBI	CTAG	6 cut(s)	1074, 1277, 1292, 1872, 1974, 2322
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	7 cut(s)	93, 148, 662, 1251, 1332, 1368, 2126
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	6 cut(s)	255, 795, 1299, 1541, 2331, 2413
HapII	CCGG	3 cut(s)	144, 1904, 2410
HgaI	GACGC	1 cut(s)	821
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	2641
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	2449
HinfI	GANTC	8 cut(s)	59, 133, 555, 1146, 1283, 1496, 2026, 2308
HpaII	CCGG	3 cut(s)	144, 1904, 2410
HphI	GGTGA	5 cut(s)	68, 298, 563, 1698, 1893
Hpy166II	GTNNAC	5 cut(s)	861, 1126, 1512, 2342, 2639
Hpy8I	GTNNAC	5 cut(s)	861, 1126, 1512, 2342, 2639
HpyCH4III	ACNGT	5 cut(s)	236, 777, 802, 2217, 2376
HpyCH4IV	ACGT	2 cut(s)	2405, 2641
HpyF10VI	GCNNNNNNNGC	5 cut(s)	153, 422, 712, 976, 1855
HpySE526I	ACGT	2 cut(s)	2405, 2641
Hsp92I	GRCGYC	1 cut(s)	2641
HspAI	GCGC	1 cut(s)	52
KflI	GGGWCCC	2 cut(s)	781, 1795
KroI	GCCGGC	1 cut(s)	2409
KroNI	GCCGGC	1 cut(s)	2411
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	3 cut(s)	100, 1846, 2168
Lsp1109I	GCAGC	7 cut(s)	104, 159, 673, 1237, 1318, 1354, 2137
MaeI	CTAG	6 cut(s)	1074, 1277, 1292, 1872, 1974, 2322
MaeII	ACGT	2 cut(s)	2405, 2641
MaeIII	GTNAC	7 cut(s)	236, 560, 586, 1704, 1899, 2081, 2309
MfeI	CAATTG	2 cut(s)	198, 1626
MflI	RGATCY	3 cut(s)	507, 679, 2182
MhlI	GDGCHC	3 cut(s)	130, 158, 1064
MlyI	GAGTC	3 cut(s)	142, 564, 2317
MmeI	TCCRAC	1 cut(s)	457
Mph1103I	ATGCAT	2 cut(s)	385, 1882
MroNI	GCCGGC	1 cut(s)	2409
MroXI	GAANNNNTTC	2 cut(s)	426, 1760
MslI	CAYNNNNRTG	3 cut(s)	1007, 2199, 2622
MspCI	CTTAAG	2 cut(s)	17, 1027
MspI	CCGG	3 cut(s)	144, 1904, 2410
MspR9I	CCNGG	3 cut(s)	144, 786, 1905
MunI	CAATTG	2 cut(s)	198, 1626
Mva1269I	GAATGC	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	786
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	5 cut(s)	153, 422, 712, 976, 1855
NaeI	GCCGGC	1 cut(s)	2411
NciI	CCSGG	2 cut(s)	144, 1905
NcoI	CCATGG	1 cut(s)	614
NdeI	CATATG	1 cut(s)	311
NgoMIV	GCCGGC	1 cut(s)	2409
NlaIV	GGNNCC	7 cut(s)	129, 195, 782, 783, 1796, 1797, 2192
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	5 cut(s)	560, 586, 1704, 1899, 2309
NsiI	ATGCAT	2 cut(s)	385, 1882
NspI	RCATGY	4 cut(s)	892, 1037, 1169, 1880
PaeI	GCATGC	1 cut(s)	1037
PagI	TCATGA	1 cut(s)	691
PceI	AGGCCT	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	2491
PctI	GAATGC	1 cut(s)	744
PdiI	GCCGGC	1 cut(s)	2411
PdmI	GAANNNNTTC	2 cut(s)	426, 1760
PfeI	GAWTC	5 cut(s)	59, 1146, 1283, 1496, 2026
PflMI	CCANNNNNTGG	4 cut(s)	504, 615, 791, 1452
PkrI	GCNGC	7 cut(s)	94, 149, 663, 1252, 1333, 1369, 2127
PleI	GAGTC	3 cut(s)	141, 563, 2316
PmaCI	CACGTG	1 cut(s)	2406
PmlI	CACGTG	1 cut(s)	2406
PpsI	GAGTC	3 cut(s)	141, 563, 2316
Ppu21I	YACGTR	1 cut(s)	2406
PpuMI	RGGWCCY	2 cut(s)	781, 1795
PsiI	TTATAA	1 cut(s)	1050
Psp5II	RGGWCCY	2 cut(s)	781, 1795
Psp6I	CCWGG	1 cut(s)	784
PspCI	CACGTG	1 cut(s)	2406
PspEI	GGTNACC	1 cut(s)	1704
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	7 cut(s)	129, 195, 782, 783, 1796, 1797, 2192
PspPI	GGNCC	9 cut(s)	211, 781, 794, 1126, 1297, 1390, 1795, 2191, 2330
PspPPI	RGGWCCY	2 cut(s)	781, 1795
PstI	CTGCAG	1 cut(s)	885
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	3 cut(s)	507, 679, 2182
RsaI	GTAC	5 cut(s)	233, 1164, 1719, 2265, 2341
RsaNI	GTAC	5 cut(s)	232, 1163, 1718, 2264, 2340
RseI	CAYNNNNRTG	3 cut(s)	1007, 2199, 2622
SapI	GCTCTTC	1 cut(s)	432
SatI	GCNGC	7 cut(s)	93, 148, 662, 1251, 1332, 1368, 2126
Sau96I	GGNCC	9 cut(s)	211, 781, 794, 1126, 1297, 1390, 1795, 2191, 2330
SchI	GAGTC	3 cut(s)	142, 564, 2317
ScrFI	CCNGG	3 cut(s)	144, 786, 1905
SduI	GDGCHC	3 cut(s)	130, 158, 1064
SfcI	CTRYAG	1 cut(s)	881
SinI	GGWCC	6 cut(s)	211, 781, 1126, 1390, 1795, 2191
SmiMI	CAYNNNNRTG	3 cut(s)	1007, 2199, 2622
SmlI	CTYRAG	7 cut(s)	17, 854, 1027, 1529, 1765, 1948, 2387
SmoI	CTYRAG	7 cut(s)	17, 854, 1027, 1529, 1765, 1948, 2387
SphI	GCATGC	1 cut(s)	1037
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	2 cut(s)	54, 715
SspI	AATATT	1 cut(s)	1178
SspMI	CTAG	6 cut(s)	1074, 1277, 1292, 1872, 1974, 2322
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	3 cut(s)	142, 784, 1903
StyI	CCWWGG	1 cut(s)	614
TaaI	ACNGT	5 cut(s)	236, 777, 802, 2217, 2376
TaiI	ACGT	2 cut(s)	2408, 2644
TaqI	TCGA	2 cut(s)	2209, 2566
TatI	WGTACW	2 cut(s)	231, 2263
TfiI	GAWTC	5 cut(s)	59, 1146, 1283, 1496, 2026
TscAI	CASTG	3 cut(s)	782, 1069, 2318
TseFI	GTSAC	5 cut(s)	560, 586, 1704, 1899, 2309
TseI	GCWGC	7 cut(s)	92, 147, 661, 1250, 1331, 1367, 2125
Tsp45I	GTSAC	5 cut(s)	560, 586, 1704, 1899, 2309
TspDTI	ATGAA	8 cut(s)	419, 612, 997, 1213, 1952, 2445, 2505, 2606
TspGWI	ACGGA	3 cut(s)	548, 605, 2500
TspRI	CASTG	3 cut(s)	782, 1069, 2318
Van91I	CCANNNNNTGG	4 cut(s)	504, 615, 791, 1452
Vha464I	CTTAAG	2 cut(s)	17, 1027
VpaK11BI	GGWCC	6 cut(s)	211, 781, 1126, 1390, 1795, 2191
XapI	RAATTY	7 cut(s)	901, 1087, 1112, 1220, 1619, 2434, 2606
XbaI	TCTAGA	1 cut(s)	1073
XceI	RCATGY	4 cut(s)	892, 1037, 1169, 1880
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774
XmiI	GTMKAC	2 cut(s)	1511, 2638
XmnI	GAANNNNTTC	2 cut(s)	426, 1760
XspI	CTAG	6 cut(s)	1074, 1277, 1292, 1872, 1974, 2322
ZraI	GACGTC	1 cut(s)	2642
Zsp2I	ATGCAT	2 cut(s)	385, 1882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.