Rorug06G0342700

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011802
Physical Location & Seq
Reverse (-)
49372831 .. 49374415
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0342700.1

Sequence Viewer

Length: 1230 bp
ATGATGGTCCTTGTTCATCAAGAAACGATAAGATCTGACCACCTCTCCTCCCACATTTATGCCTTGCCCTGTTCCAAAGCTACACCAAATAAATACCATCTCCCCTATTCAACCACCCAGAAAACAAGGAAAAAACCAGAGCAAGAAATGAATGGTTTCAAGGAAGAAGACGAACCAGGGCACCAGAACATGGGGCAGCAGAAGAAGAAGAAGAGGCTCTGTGATTACTGTGGAGTCTCCATGGCTCTGCTCTACTGCAGAGCCGACTCTGCTAAGCTCTGTTTCTCTTGTGACAAAGAAGTCCACTCGGCTAATCAGCTTTTCATCAAGCACACTCGGTCACAGCTCTGTGACGCCTGTGACGAAGCCCCTGCTTCTATTTTCTGCTCTACTGAGAGCTCTGTGCTGTGCCAGAACTGTGACTGGGAAAGGCATAATCTGTCGTCGGCGACGGTGCACGATAGGAGGCCGGTGGAGGGTTTTACTGGCAACCCTGGGTTGAATGAGCTGCTGGCGTTTGTGGGGTTTGAGAATCTGGATAAGAAAGGTTTGGTTGTTAGTGAGGAGAGTAGCGGTGGTGGTGGGTTTGATGGGTCTGGGCTTGACGGGTCGTTGGGTTTGTCCGAGGGGTTTTCGGATTTTCTGGTTTGGGAAACTCCCTCTGTTGTTAGTCTTGATGATTTGATTGTTTCGAGTCCGGCTCATAAGTTTCAGGCTATGGGGGTTCCTCCTCTGCCCAAGAACCGGAATGCTAAGTGTGGGCGACACAAGGAAGAGATACTGAGTCAGCTTCGGGTAGTAGCAAAGTCTGAACCCAATTTGATGAATGAGGATGTAGATCTTAATTCCTTCATGAGATTCCAATCACCGGAGACTGAGCATAATATGCAATCAGGGGGTTTCTGTACAAATTTTGAACAGGATGCGGAGCCGCTTGCGTTTCCTGCTTATGAGGCACAGGAGTTTGAGGCTAATCATTATGAGAAGTCTTCAAGTCAAGATTTCTTCCCAAAAACATTACAGAGGAGCTACCTTCAGGACTGTTCTATGGTTCCTGATTTAAATTCGAATAATGATGGCACTGCAAGTCATGCTAGTGATGGTTTTGGAGGGCAAATGAATTCTGAAGCCTCTTCAGCTTTCCCAAAAGTTCCTTCACATGAATGTACTCTAAATAGAGAGTCTGCACTCTCAAGGTACAAGGAGAAGAAGAAAACAAGGAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

409

Amino Acids

45.48

Weight (kDa)

5.7

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 70 - 115 1.4e-06 B-box zinc finger
zf-B_box PF00643 114 - 157 7e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011802)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25620 AT5G25620
fragaria_vesca FvH4_2g36220
malus_domestica MD08G1119300.v1.1 MD15G1098700.v1.1
prunus_persica Prupe.1G453400_v2.0.a1
pyrus_communis pycom08g09960 pycom15g09030
rosa_chinensis RchiOBHm_Chr6g0305661
rosa_laevigata RLG00000010868
rosa_multiflora Rmu_sc0001809.1_g000034
rosa_roxburghii Rroxscaffold_7G00162460
rosa_rugosa Rorug06G0342700 Rorug06G0342800
rosa_samantha Rh6AG454500 Rh6BG447000 Rh6CG468400 Rh6DG455000
rosa_wichuraiana Rw6G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 190
AciI CCGC 3 cut(s) 573, 926, 932
AcsI RAATTY 3 cut(s) 910, 1063, 1120
AcuI CTGAAG 3 cut(s) 1019, 1119, 1146
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 3 cut(s) 907, 1168, 1199
AfiI CCNNNNNNNGG 4 cut(s) 190, 476, 744, 868
AgsI TTSAA 5 cut(s) 111, 160, 502, 917, 993
AjnI CCWGG 2 cut(s) 175, 493
AjuI GAANNNNNNNTTGG 2 cut(s) 1138, 1170
AluBI AGCT 9 cut(s) 80, 277, 319, 346, 399, 508, 790, 1029, 1139
AluI AGCT 9 cut(s) 80, 277, 319, 346, 399, 508, 790, 1029, 1139
Alw21I GWGCWC 2 cut(s) 401, 459
Alw26I GTCTC 2 cut(s) 241, 866
Alw44I GTGCAC 1 cut(s) 455
AoxI GGCC 1 cut(s) 467
ApaLI GTGCAC 1 cut(s) 455
ApeKI GCWGC 2 cut(s) 196, 508
ApoI RAATTY 3 cut(s) 910, 1063, 1120
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 858
AsuII TTCGAA 1 cut(s) 1067
AvaII GGWCC 1 cut(s) 7
BaeGI GKGCMC 2 cut(s) 183, 459
BanI GGYRCC 1 cut(s) 180
BanII GRGCYC 1 cut(s) 401
BbsI GAAGAC 2 cut(s) 174, 981
Bbv12I GWGCWC 2 cut(s) 401, 459
BbvI GCAGC 2 cut(s) 208, 495
BccI CCATC 4 cut(s) 105, 584, 1070, 1094
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 2 cut(s) 177, 495
BcoDI GTCTC 2 cut(s) 241, 866
BfaI CTAG 1 cut(s) 1095
BfmI CTRYAG 1 cut(s) 256
BglII AGATCT 2 cut(s) 32, 838
BisI GCNGC 3 cut(s) 197, 509, 932
BlpI GCTNAGC 1 cut(s) 273
BlsI GCNGC 3 cut(s) 198, 510, 933
Bme1390I CCNGG 2 cut(s) 177, 495
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 4 cut(s) 182, 726, 930, 1053
BmrFI CCNGG 2 cut(s) 177, 495
BmrI ACTGGG 1 cut(s) 433
BmsI GCATC 1 cut(s) 913
BmuI ACTGGG 1 cut(s) 433
BpiI GAAGAC 2 cut(s) 174, 981
BplI GAGNNNNNCTC 2 cut(s) 685, 717
Bpu1102I GCTNAGC 1 cut(s) 273
Bpu14I TTCGAA 1 cut(s) 1067
BpuEI CTTGAG 1 cut(s) 1177
BsaBI GATNNNNATC 2 cut(s) 837, 862
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 5 cut(s) 176, 240, 493, 494, 624
BsaWI WCCGGW 2 cut(s) 744, 868
BsaXI ACNNNNNCTCC 4 cut(s) 29, 32, 59, 62
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 476, 744, 868
Bse118I RCCGGY 1 cut(s) 469
Bse1I ACTGG 2 cut(s) 428, 490
Bse8I GATNNNNATC 2 cut(s) 837, 862
BseBI CCWGG 2 cut(s) 177, 495
BseDI CCNNGG 5 cut(s) 176, 240, 493, 494, 624
BseGI GGATG 2 cut(s) 838, 928
BseJI GATNNNNATC 2 cut(s) 837, 862
BseLI CCNNNNNNNGG 4 cut(s) 190, 476, 744, 868
BseMII CTCAG 3 cut(s) 384, 773, 867
BseNI ACTGG 2 cut(s) 428, 490
BseRI GAGGAG 4 cut(s) 37, 578, 720, 1039
BseSI GKGCMC 2 cut(s) 183, 459
BseXI GCAGC 2 cut(s) 208, 495
BsgI GTGCAG 1 cut(s) 1170
BshFI GGCC 1 cut(s) 469
BshNI GGYRCC 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 401, 459
BsiSI CCGG 4 cut(s) 470, 698, 745, 869
BslI CCNNNNNNNGG 4 cut(s) 190, 476, 744, 868
BsmAI GTCTC 2 cut(s) 241, 866
BsmI GAATGC 1 cut(s) 754
BsnI GGCC 1 cut(s) 469
Bsp119I TTCGAA 1 cut(s) 1067
Bsp1286I GDGCHC 3 cut(s) 183, 401, 459
Bsp1407I TGTACA 1 cut(s) 905
Bsp143I GATC 3 cut(s) 32, 838, 1223
Bsp1720I GCTNAGC 1 cut(s) 273
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 3 cut(s) 573, 926, 932
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 3 cut(s) 385, 774, 868
BspHI TCATGA 2 cut(s) 852, 1226
BspLI GGNNCC 4 cut(s) 182, 726, 930, 1053
BspMAI CTGCAG 1 cut(s) 260
BspT104I TTCGAA 1 cut(s) 1067
BspT107I GGYRCC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 469
BsrGI TGTACA 1 cut(s) 905
BsrI ACTGG 2 cut(s) 428, 490
BssAI RCCGGY 1 cut(s) 469
BssECI CCNNGG 5 cut(s) 176, 240, 493, 494, 624
BssMI GATC 3 cut(s) 32, 838, 1223
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 2 cut(s) 177, 495
Bst4CI ACNGT 4 cut(s) 230, 419, 454, 1043
Bst6I CTCTTC 3 cut(s) 206, 768, 1138
BstACI GRCGYC 1 cut(s) 354
BstAPI GCANNNNNTGC 2 cut(s) 886, 1091
BstAUI TGTACA 1 cut(s) 905
BstBI TTCGAA 1 cut(s) 1067
BstC8I GCNNGC 2 cut(s) 513, 936
BstDEI CTNAG 5 cut(s) 273, 393, 753, 782, 876
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 838, 928
BstKTI GATC 3 cut(s) 35, 841, 1226
BstMAI GTCTC 2 cut(s) 241, 866
BstMBI GATC 3 cut(s) 32, 838, 1223
BstMWI GCNNNNNNNGC 6 cut(s) 269, 886, 944, 953, 1091, 1136
BstNI CCWGG 2 cut(s) 177, 495
BstSCI CCNGG 2 cut(s) 175, 493
BstSFI CTRYAG 1 cut(s) 256
BstSLI GKGCMC 2 cut(s) 183, 459
BstV1I GCAGC 2 cut(s) 208, 495
BstV2I GAAGAC 2 cut(s) 174, 981
BstX2I RGATCY 2 cut(s) 32, 838
BstYI RGATCY 2 cut(s) 32, 838
BsuRI GGCC 1 cut(s) 469
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 838, 928
BtsI GCAGTG 1 cut(s) 1080
BtsIMutI CAGTG 1 cut(s) 1080
Cac8I GCNNGC 2 cut(s) 513, 936
CciI TCATGA 2 cut(s) 852, 1226
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 906, 1167, 1198
CviAII CATG 6 cut(s) 190, 241, 853, 1091, 1160, 1227
CviQI GTAC 3 cut(s) 906, 1167, 1198
DdeI CTNAG 5 cut(s) 273, 393, 753, 782, 876
DpnI GATC 3 cut(s) 34, 840, 1225
DpnII GATC 3 cut(s) 32, 838, 1223
DraI TTTAAA 1 cut(s) 1062
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 3 cut(s) 206, 768, 1138
EarI CTCTTC 3 cut(s) 206, 768, 1138
Ecl136II GAGCTC 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 399
Eco57I CTGAAG 3 cut(s) 1019, 1119, 1146
EcoICRI GAGCTC 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 1120
EcoRII CCWGG 2 cut(s) 175, 493
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 6 cut(s) 193, 244, 856, 1094, 1163, 1230
FatI CATG 6 cut(s) 189, 240, 852, 1090, 1159, 1226
Fnu4HI GCNGC 3 cut(s) 197, 509, 932
FokI GGATG 2 cut(s) 845, 935
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 3 cut(s) 197, 509, 932
FspBI CTAG 1 cut(s) 1095
GluI GCNGC 3 cut(s) 197, 509, 932
HaeIII GGCC 1 cut(s) 469
HapII CCGG 4 cut(s) 470, 698, 745, 869
HgaI GACGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 6 cut(s) 193, 244, 856, 1094, 1163, 1230
HinfI GANTC 7 cut(s) 234, 266, 532, 694, 784, 858, 1181
HpaII CCGG 4 cut(s) 470, 698, 745, 869
HphI GGTGA 1 cut(s) 858
Hpy166II GTNNAC 2 cut(s) 304, 457
Hpy188I TCNGA 5 cut(s) 37, 625, 637, 811, 1126
Hpy188III TCNNGA 8 cut(s) 20, 536, 674, 853, 998, 1037, 1055, 1227
Hpy8I GTNNAC 2 cut(s) 304, 457
Hpy99I CGWCG 2 cut(s) 448, 454
HpyAV CCTTC 3 cut(s) 859, 1043, 1164
HpyCH4III ACNGT 4 cut(s) 230, 419, 454, 1043
HpyCH4V TGCA 5 cut(s) 258, 457, 889, 1085, 1187
HpyF10VI GCNNNNNNNGC 6 cut(s) 269, 886, 944, 953, 1091, 1136
HpyF3I CTNAG 5 cut(s) 273, 393, 753, 782, 876
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 6 cut(s) 193, 244, 856, 1094, 1163, 1230
Kzo9I GATC 3 cut(s) 32, 838, 1223
LmnI GCTCC 2 cut(s) 928, 1026
Lsp1109I GCAGC 2 cut(s) 208, 495
LweI GCATC 1 cut(s) 913
MaeI CTAG 1 cut(s) 1095
MaeIII GTNAC 5 cut(s) 290, 339, 350, 359, 419
MalI GATC 3 cut(s) 34, 840, 1225
MboI GATC 3 cut(s) 32, 838, 1223
MflI RGATCY 2 cut(s) 32, 838
MhlI GDGCHC 3 cut(s) 183, 401, 459
MluCI AATT 5 cut(s) 817, 844, 910, 1063, 1120
MlyI GAGTC 5 cut(s) 243, 260, 703, 793, 1190
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 2 cut(s) 843, 1061
MslI CAYNNNNRTG 3 cut(s) 57, 1095, 1162
MspI CCGG 4 cut(s) 470, 698, 745, 869
MspR9I CCNGG 2 cut(s) 177, 495
Mva1269I GAATGC 1 cut(s) 754
MvaI CCWGG 2 cut(s) 177, 495
MwoI GCNNNNNNNGC 6 cut(s) 269, 886, 944, 953, 1091, 1136
NcoI CCATGG 1 cut(s) 240
NdeII GATC 3 cut(s) 32, 838, 1223
NlaIII CATG 6 cut(s) 193, 244, 856, 1094, 1163, 1230
NlaIV GGNNCC 4 cut(s) 182, 726, 930, 1053
NmeAIII GCCGAG 1 cut(s) 287
NmuCI GTSAC 5 cut(s) 290, 339, 350, 359, 419
NspV TTCGAA 1 cut(s) 1067
PagI TCATGA 2 cut(s) 852, 1226
PasI CCCWGGG 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PctI GAATGC 1 cut(s) 754
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 2 cut(s) 532, 858
PflMI CCANNNNNTGG 1 cut(s) 190
PkrI GCNGC 3 cut(s) 198, 510, 933
PleI GAGTC 5 cut(s) 242, 260, 702, 792, 1189
PpsI GAGTC 5 cut(s) 242, 260, 702, 792, 1189
Psp124BI GAGCTC 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 175, 493
PspGI CCWGG 2 cut(s) 175, 493
PspN4I GGNNCC 4 cut(s) 182, 726, 930, 1053
PspPI GGNCC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 260
PsuI RGATCY 2 cut(s) 32, 838
RsaI GTAC 3 cut(s) 907, 1168, 1199
RsaNI GTAC 3 cut(s) 906, 1167, 1198
RseI CAYNNNNRTG 3 cut(s) 57, 1095, 1162
SacI GAGCTC 1 cut(s) 401
SaqAI TTAA 2 cut(s) 843, 1061
SatI GCNGC 3 cut(s) 197, 509, 932
Sau3AI GATC 3 cut(s) 32, 838, 1223
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 5 cut(s) 243, 260, 703, 793, 1190
ScrFI CCNGG 2 cut(s) 177, 495
SduI GDGCHC 3 cut(s) 183, 401, 459
SfaNI GCATC 1 cut(s) 913
SfcI CTRYAG 1 cut(s) 256
SfuI TTCGAA 1 cut(s) 1067
SinI GGWCC 1 cut(s) 7
SmiI ATTTAAAT 1 cut(s) 1062
SmiMI CAYNNNNRTG 3 cut(s) 57, 1095, 1162
SmlI CTYRAG 1 cut(s) 1192
SmoI CTYRAG 1 cut(s) 1192
Sse9I AATT 5 cut(s) 817, 844, 910, 1063, 1120
SsiI CCGC 3 cut(s) 573, 926, 932
SspMI CTAG 1 cut(s) 1095
SstI GAGCTC 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 175, 493
StyI CCWWGG 1 cut(s) 240
SwaI ATTTAAAT 1 cut(s) 1062
TaaI ACNGT 4 cut(s) 230, 419, 454, 1043
TaqI TCGA 2 cut(s) 692, 1067
TaqII GACCGA 1 cut(s) 327
TasI AATT 5 cut(s) 817, 844, 910, 1063, 1120
TatI WGTACW 2 cut(s) 905, 1166
TauI GCSGC 1 cut(s) 934
TfiI GAWTC 2 cut(s) 532, 858
Tru1I TTAA 2 cut(s) 843, 1061
Tru9I TTAA 2 cut(s) 843, 1061
TscAI CASTG 1 cut(s) 1087
TseFI GTSAC 5 cut(s) 290, 339, 350, 359, 419
TseI GCWGC 2 cut(s) 196, 508
Tsp45I GTSAC 5 cut(s) 290, 339, 350, 359, 419
TspDTI ATGAA 7 cut(s) 5, 164, 313, 839, 841, 1133, 1176
TspRI CASTG 1 cut(s) 1087
Van91I CCANNNNNTGG 1 cut(s) 190
VneI GTGCAC 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 3 cut(s) 910, 1063, 1120
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 1 cut(s) 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.