Rorug06G0342800

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011802
Physical Location & Seq
Reverse (-)
49375183 .. 49379083
3901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0342800.1

Sequence Viewer

Length: 1146 bp
ATGGAAAGCTCCGGCTCTCCGGCGCCTCGGACTCAAAAGCCACGCGATTTCGGAAAGTCCGAGTACGGGTGCAACCATTATCGGAGACGGTGCAGGATTCGAGCCCCTTGCTGCGATCAGATCTTCCCCTGTAGGCATTGCCACAACGAAGCCGCCAGCTCTCTGAGCAACCCGAAGGATCGCCATGAAATTGTGAGACAGGATGTGAAGCAAGTTGTGTGCTCCATTTGCGATACCGAGCAAGAGGTTGCTCAGCTTTGTGCAAACTGTGGTGTTAGCATGGGAGAGTATTTCTGCGACATTTGCAAGTTCTTTGATGATGATACCAACAAAGGGCAATTTCATTGCAACGAGTGCGGAATTTGTAGAGTTGGTGGTCGCGACAACTTCTTCCATTGTCAGAAGTGTGGGTCTTGCTATGGAGTGGATCTACGCGATAATCACTTATGTGTAGAAAATTCCATGAAGAACCACTGCCCTGTCTGTTATGAGTATCTCTTTGACTCGGTTAAAGGCACATCGATAATGAACTGTGGGCACACAATGCATACGGATTGCTTTATTGAGATGCACTCACAGAATCAGTATCGTTGCCCCCTTTGCTCCAAGACATTGCTCAACATGACTCGTTTCTGGAATATGTTGGATGAGGAGATTGCAGCTACTCCCATGCCTGAGGAGTACCAGTACGAGGCGGGTTCTGAAGCGGACGTCCGCACTTTGCTAAAGTGCGGACGGCGACGCAGCGGCGGTGTTCCAGGCGGCGACGGCGGCTCGGGGCTTGGCGGACGGAGGCCGGAGGCTTGGCGGACTGTTCTGGGCAGCGTTCGAGGTCGGAGGAGGTCGGAGTTGCAGGTTTCTGGGCAGCGAGCTCACCTGCAACTGCAGATTTCTGGGCAAGGCTGCAACCACGTCGCCGGCGACTCCACCGACTGCAGACCCGTCCGTCAGACCCCTGGCGTCAGTCCGGCAAGCTCCGCCGCTCCGTCGCGCCCCGAGCCGAGCTGCAGCGTCGACGTCCGCACTTTAACAACAGTGCGGACGTCCTCTTTGGAACCGCTCCGTACAGTGATATTGGAGCAAATTTGGAAGCGAGTTGGGGTGGTTCAGATGGTTTGGGCATTTACAACTTTATTGTATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

381

Amino Acids

42.61

Weight (kDa)

8.05

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 24 - 97 7.4e-20 CHY zinc finger
zf-C3HC4 PF00097 159 - 201 4.8e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 159 - 201 6.2e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011802)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25620 AT5G25620
fragaria_vesca FvH4_2g36220
malus_domestica MD08G1119300.v1.1 MD15G1098700.v1.1
prunus_persica Prupe.1G453400_v2.0.a1
pyrus_communis pycom08g09960 pycom15g09030
rosa_chinensis RchiOBHm_Chr6g0305661
rosa_laevigata RLG00000010868
rosa_multiflora Rmu_sc0001809.1_g000034
rosa_roxburghii Rroxscaffold_7G00162460
rosa_rugosa Rorug06G0342700 Rorug06G0342800
rosa_samantha Rh6AG454500 Rh6BG447000 Rh6CG468400 Rh6DG455000
rosa_wichuraiana Rw6G039630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 885
AasI GACNNNNNNGTC 1 cut(s) 945
AatII GACGTC 3 cut(s) 714, 1020, 1046
Acc36I ACCTGC 2 cut(s) 844, 885
AccB1I GGYRCC 1 cut(s) 22
AccBSI CCGCTC 2 cut(s) 983, 1060
AccI GTMKAC 1 cut(s) 1014
AccII CGCG 4 cut(s) 45, 381, 435, 991
AclWI GGATC 2 cut(s) 186, 435
AcsI RAATTY 3 cut(s) 360, 457, 1083
AcuI CTGAAG 1 cut(s) 723
AcyI GRCGYC 5 cut(s) 23, 711, 960, 1017, 1043
AfaI GTAC 4 cut(s) 65, 683, 689, 1066
AfiI CCNNNNNNNGG 3 cut(s) 66, 333, 691
AjiI CACGTC 1 cut(s) 913
AjnI CCWGG 2 cut(s) 757, 955
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 7 cut(s) 9, 159, 256, 662, 872, 975, 1005
AluI AGCT 7 cut(s) 9, 159, 256, 662, 872, 975, 1005
Alw21I GWGCWC 2 cut(s) 224, 874
Alw26I GTCTC 2 cut(s) 79, 190
AlwI GGATC 2 cut(s) 186, 435
Ama87I CYCGRG 2 cut(s) 775, 995
AoxI GGCC 1 cut(s) 794
ApeKI GCWGC 8 cut(s) 111, 659, 744, 822, 865, 903, 1005, 1008
ApoI RAATTY 3 cut(s) 360, 457, 1083
ArsI GACNNNNNNTTYG 2 cut(s) 1033, 1065
AspLEI GCGC 2 cut(s) 25, 993
AsuHPI GGTGA 1 cut(s) 866
AvaI CYCGRG 2 cut(s) 775, 995
AxyI CCTNAGG 1 cut(s) 675
BaeGI GKGCMC 1 cut(s) 540
BanI GGYRCC 1 cut(s) 22
BanII GRGCYC 2 cut(s) 106, 874
Bbv12I GWGCWC 2 cut(s) 224, 874
BbvI GCAGC 8 cut(s) 98, 671, 756, 834, 877, 890, 992, 1020
BccI CCATC 1 cut(s) 1105
BceAI ACGGC 2 cut(s) 752, 784
BcgI CGANNNNNNTGC 4 cut(s) 90, 124, 895, 929
BciT130I CCWGG 2 cut(s) 759, 957
BcoDI GTCTC 2 cut(s) 79, 190
BfmI CTRYAG 4 cut(s) 130, 884, 934, 1006
BfoI RGCGCY 1 cut(s) 26
BfuAI ACCTGC 2 cut(s) 844, 885
BglII AGATCT 1 cut(s) 120
BlpI GCTNAGC 1 cut(s) 252
Bme1390I CCNGG 2 cut(s) 759, 957
BmeT110I CYCGRG 2 cut(s) 775, 995
BmgBI CACGTC 1 cut(s) 913
BmiI GGNNCC 2 cut(s) 24, 1056
BmrFI CCNGG 2 cut(s) 759, 957
BmsI GCATC 1 cut(s) 558
BplI GAGNNNNNCTC 2 cut(s) 557, 589
Bpu1102I GCTNAGC 1 cut(s) 252
Bsa29I ATCGAT 1 cut(s) 521
BsaHI GRCGYC 5 cut(s) 23, 711, 960, 1017, 1043
BsaJI CCNNGG 2 cut(s) 26, 955
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 333, 691
Bse118I RCCGGY 1 cut(s) 917
Bse1I ACTGG 1 cut(s) 685
Bse21I CCTNAGG 1 cut(s) 675
Bse3DI GCAATG 3 cut(s) 136, 343, 611
BseBI CCWGG 2 cut(s) 759, 957
BseCI ATCGAT 1 cut(s) 521
BseDI CCNNGG 2 cut(s) 26, 955
BseGI GGATG 2 cut(s) 208, 652
BseLI CCNNNNNNNGG 3 cut(s) 66, 333, 691
BseMI GCAATG 3 cut(s) 136, 343, 611
BseMII CTCAG 3 cut(s) 155, 266, 666
BseNI ACTGG 1 cut(s) 685
BseRI GAGGAG 3 cut(s) 665, 692, 853
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 8 cut(s) 98, 671, 756, 834, 877, 890, 992, 1020
BsgI GTGCAG 1 cut(s) 112
Bsh1236I CGCG 4 cut(s) 45, 381, 435, 991
BshFI GGCC 1 cut(s) 796
BshNI GGYRCC 1 cut(s) 22
BshVI ATCGAT 1 cut(s) 521
BsiHKAI GWGCWC 2 cut(s) 224, 874
BsiHKCI CYCGRG 2 cut(s) 775, 995
BsiSI CCGG 5 cut(s) 12, 20, 797, 918, 968
BslI CCNNNNNNNGG 3 cut(s) 66, 333, 691
BsmAI GTCTC 2 cut(s) 79, 190
BsmBI CGTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 796
BsoBI CYCGRG 2 cut(s) 775, 995
Bsp1286I GDGCHC 4 cut(s) 106, 224, 540, 874
Bsp143I GATC 4 cut(s) 115, 120, 178, 427
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp68I TCGCGA 1 cut(s) 381
BspANI GGCC 1 cut(s) 796
BspCNI CTCAG 3 cut(s) 156, 265, 667
BspDI ATCGAT 1 cut(s) 521
BspFNI CGCG 4 cut(s) 45, 381, 435, 991
BspLI GGNNCC 2 cut(s) 24, 1056
BspMAI CTGCAG 3 cut(s) 888, 938, 1010
BspMI ACCTGC 2 cut(s) 844, 885
BspPI GGATC 2 cut(s) 186, 435
BspT107I GGYRCC 1 cut(s) 22
BsrBI CCGCTC 2 cut(s) 983, 1060
BsrDI GCAATG 3 cut(s) 136, 343, 611
BsrFI RCCGGY 1 cut(s) 917
BsrI ACTGG 1 cut(s) 685
BssAI RCCGGY 1 cut(s) 917
BssECI CCNNGG 2 cut(s) 26, 955
BssMI GATC 4 cut(s) 115, 120, 178, 427
BssNI GRCGYC 5 cut(s) 23, 711, 960, 1017, 1043
Bst2UI CCWGG 2 cut(s) 759, 957
Bst4CI ACNGT 6 cut(s) 90, 269, 533, 814, 1036, 1069
BstACI GRCGYC 5 cut(s) 23, 711, 960, 1017, 1043
BstAPI GCANNNNNTGC 2 cut(s) 354, 544
BstC8I GCNNGC 4 cut(s) 157, 870, 919, 973
BstDEI CTNAG 3 cut(s) 164, 252, 675
BstF5I GGATG 2 cut(s) 208, 652
BstFNI CGCG 4 cut(s) 45, 381, 435, 991
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 993
BstKTI GATC 4 cut(s) 118, 123, 181, 430
BstMAI GTCTC 2 cut(s) 79, 190
BstMBI GATC 4 cut(s) 115, 120, 178, 427
BstNI CCWGG 2 cut(s) 759, 957
BstSCI CCNGG 2 cut(s) 757, 955
BstSFI CTRYAG 4 cut(s) 130, 884, 934, 1006
BstSLI GKGCMC 1 cut(s) 540
BstUI CGCG 4 cut(s) 45, 381, 435, 991
BstV1I GCAGC 8 cut(s) 98, 671, 756, 834, 877, 890, 992, 1020
BstX2I RGATCY 2 cut(s) 120, 427
BstYI RGATCY 2 cut(s) 120, 427
Bsu15I ATCGAT 1 cut(s) 521
Bsu36I CCTNAGG 1 cut(s) 675
BsuRI GGCC 1 cut(s) 796
BsuTUI ATCGAT 1 cut(s) 521
BtrI CACGTC 1 cut(s) 913
BtsCI GGATG 2 cut(s) 208, 652
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 3 cut(s) 472, 1041, 1074
BtuMI TCGCGA 1 cut(s) 381
BveI ACCTGC 2 cut(s) 844, 885
Cac8I GCNNGC 4 cut(s) 157, 870, 919, 973
CfoI GCGC 2 cut(s) 25, 993
Cfr10I RCCGGY 1 cut(s) 917
ClaI ATCGAT 1 cut(s) 521
CseI GACGC 3 cut(s) 750, 949, 1000
Csp6I GTAC 4 cut(s) 64, 682, 688, 1065
CviAII CATG 5 cut(s) 185, 280, 463, 622, 670
CviQI GTAC 4 cut(s) 64, 682, 688, 1065
DdeI CTNAG 3 cut(s) 164, 252, 675
DinI GGCGCC 1 cut(s) 24
DpnI GATC 4 cut(s) 117, 122, 180, 429
DpnII GATC 4 cut(s) 115, 120, 178, 427
DrdI GACNNNNNNGTC 1 cut(s) 945
DseDI GACNNNNNNGTC 1 cut(s) 945
EciI GGCGGA 3 cut(s) 801, 823, 967
Ecl136II GAGCTC 1 cut(s) 872
Eco24I GRGCYC 2 cut(s) 106, 874
Eco53kI GAGCTC 1 cut(s) 872
Eco57I CTGAAG 1 cut(s) 723
Eco81I CCTNAGG 1 cut(s) 675
Eco88I CYCGRG 2 cut(s) 775, 995
EcoICRI GAGCTC 1 cut(s) 872
EcoRII CCWGG 2 cut(s) 757, 955
EcoT22I ATGCAT 1 cut(s) 549
EcoT38I GRGCYC 2 cut(s) 106, 874
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 5 cut(s) 188, 283, 466, 625, 673
FatI CATG 5 cut(s) 184, 279, 462, 621, 669
FauI CCCGC 1 cut(s) 688
FblI GTMKAC 1 cut(s) 1014
FokI GGATG 2 cut(s) 215, 659
FriOI GRGCYC 2 cut(s) 106, 874
GlaI GCGC 2 cut(s) 24, 992
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 796
HapII CCGG 5 cut(s) 12, 20, 797, 918, 968
HgaI GACGC 3 cut(s) 750, 949, 1000
HhaI GCGC 2 cut(s) 25, 993
Hin1I GRCGYC 5 cut(s) 23, 711, 960, 1017, 1043
Hin1II CATG 5 cut(s) 188, 283, 466, 625, 673
Hin6I GCGC 2 cut(s) 23, 991
HinP1I GCGC 2 cut(s) 23, 991
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HinfI GANTC 6 cut(s) 31, 97, 503, 580, 625, 923
HpaII CCGG 5 cut(s) 12, 20, 797, 918, 968
HphI GGTGA 1 cut(s) 866
Hpy166II GTNNAC 1 cut(s) 1015
Hpy188III TCNNGA 2 cut(s) 380, 634
Hpy8I GTNNAC 1 cut(s) 1015
Hpy99I CGWCG 6 cut(s) 744, 770, 917, 991, 1016, 1019
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 6 cut(s) 90, 269, 533, 814, 1036, 1069
HpyCH4IV ACGT 4 cut(s) 711, 912, 1017, 1043
HpyF3I CTNAG 3 cut(s) 164, 252, 675
HpySE526I ACGT 4 cut(s) 711, 912, 1017, 1043
Hsp92I GRCGYC 5 cut(s) 23, 711, 960, 1017, 1043
Hsp92II CATG 5 cut(s) 188, 283, 466, 625, 673
HspAI GCGC 2 cut(s) 23, 991
KasI GGCGCC 1 cut(s) 22
KroI GCCGGC 1 cut(s) 917
KroNI GCCGGC 1 cut(s) 919
Kzo9I GATC 4 cut(s) 115, 120, 178, 427
LmnI GCTCC 7 cut(s) 14, 227, 608, 980, 988, 1065, 1078
Lsp1109I GCAGC 8 cut(s) 98, 671, 756, 834, 877, 890, 992, 1020
LweI GCATC 1 cut(s) 558
MaeII ACGT 4 cut(s) 711, 912, 1017, 1043
MalI GATC 4 cut(s) 117, 122, 180, 429
MbiI CCGCTC 2 cut(s) 983, 1060
MboI GATC 4 cut(s) 115, 120, 178, 427
MboII GAAGA 3 cut(s) 115, 382, 478
MflI RGATCY 2 cut(s) 120, 427
MhlI GDGCHC 4 cut(s) 106, 224, 540, 874
MluCI AATT 5 cut(s) 189, 338, 360, 457, 1083
Mly113I GGCGCC 1 cut(s) 23
MlyI GAGTC 4 cut(s) 25, 497, 619, 917
MmeI TCCRAC 3 cut(s) 624, 815, 825
Mph1103I ATGCAT 1 cut(s) 549
MreI CGCCGGCG 1 cut(s) 917
MroNI GCCGGC 1 cut(s) 917
MseI TTAA 2 cut(s) 510, 1028
MslI CAYNNNNRTG 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 747
MspI CCGG 5 cut(s) 12, 20, 797, 918, 968
MspR9I CCNGG 2 cut(s) 759, 957
MvaI CCWGG 2 cut(s) 759, 957
MvnI CGCG 4 cut(s) 45, 381, 435, 991
NaeI GCCGGC 1 cut(s) 919
NarI GGCGCC 1 cut(s) 23
NdeII GATC 4 cut(s) 115, 120, 178, 427
NgoMIV GCCGGC 1 cut(s) 917
NlaIII CATG 5 cut(s) 188, 283, 466, 625, 673
NlaIV GGNNCC 2 cut(s) 24, 1056
NmeAIII GCCGAG 1 cut(s) 1026
NruI TCGCGA 1 cut(s) 381
NsiI ATGCAT 1 cut(s) 549
OliI CACNNNNGTG 1 cut(s) 447
PaqCI CACCTGC 1 cut(s) 885
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 918
PdiI GCCGGC 1 cut(s) 919
PfeI GAWTC 2 cut(s) 97, 580
PleI GAGTC 4 cut(s) 25, 497, 619, 917
PluTI GGCGCC 1 cut(s) 26
PpsI GAGTC 4 cut(s) 25, 497, 619, 917
Psp124BI GAGCTC 1 cut(s) 874
Psp6I CCWGG 2 cut(s) 757, 955
PspGI CCWGG 2 cut(s) 757, 955
PspN4I GGNNCC 2 cut(s) 24, 1056
PstI CTGCAG 3 cut(s) 888, 938, 1010
PsuI RGATCY 2 cut(s) 120, 427
RruI TCGCGA 1 cut(s) 381
RsaI GTAC 4 cut(s) 65, 683, 689, 1066
RsaNI GTAC 4 cut(s) 64, 682, 688, 1065
RseI CAYNNNNRTG 1 cut(s) 447
SacI GAGCTC 1 cut(s) 874
SalI GTCGAC 1 cut(s) 1013
SaqAI TTAA 2 cut(s) 510, 1028
Sau3AI GATC 4 cut(s) 115, 120, 178, 427
SchI GAGTC 4 cut(s) 25, 497, 619, 917
ScrFI CCNGG 2 cut(s) 759, 957
SduI GDGCHC 4 cut(s) 106, 224, 540, 874
SfaNI GCATC 1 cut(s) 558
SfcI CTRYAG 4 cut(s) 130, 884, 934, 1006
SfoI GGCGCC 1 cut(s) 24
SgrAI CRCCGGYG 1 cut(s) 917
SgrDI CGTCGACG 1 cut(s) 1013
SmiMI CAYNNNNRTG 1 cut(s) 447
Sse9I AATT 5 cut(s) 189, 338, 360, 457, 1083
SspDI GGCGCC 1 cut(s) 22
SstI GAGCTC 1 cut(s) 874
StyD4I CCNGG 2 cut(s) 757, 955
TaaI ACNGT 6 cut(s) 90, 269, 533, 814, 1036, 1069
TaiI ACGT 4 cut(s) 714, 915, 1020, 1046
TaqI TCGA 4 cut(s) 100, 521, 829, 1014
TasI AATT 5 cut(s) 189, 338, 360, 457, 1083
TauI GCSGC 5 cut(s) 155, 750, 765, 774, 983
TfiI GAWTC 2 cut(s) 97, 580
Tru1I TTAA 2 cut(s) 510, 1028
Tru9I TTAA 2 cut(s) 510, 1028
TscAI CASTG 3 cut(s) 479, 1041, 1074
TseI GCWGC 8 cut(s) 111, 659, 744, 822, 865, 903, 1005, 1008
TspDTI ATGAA 4 cut(s) 201, 332, 479, 542
TspGWI ACGGA 5 cut(s) 566, 805, 935, 975, 1052
TspRI CASTG 3 cut(s) 479, 1041, 1074
XapI RAATTY 3 cut(s) 360, 457, 1083
XmiI GTMKAC 1 cut(s) 1014
ZraI GACGTC 3 cut(s) 712, 1018, 1044
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.