Rorug06G0345600

D-arabinono-1,4-lactone oxidase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
49649149 .. 49650711
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0345600.1

Sequence Viewer

Length: 288 bp
ATGTCAAGAGGCGTTGTGTCCATTGTGGGTTATGTTGGAGAAGAAAATAATGGGAACAATGGATTTCTTAGTGAACAAGATGGGCTTGGAGAAGAGAATCATCCCAAGGTGGTCGGTTGTAAGAGTTTTGATCTTGAAAGGATTGATGAAAGAGGACGTTTGAGTATGAATACTCTTATTGCTACTCCAGAGAAGTACTTCTTGACTGTGTTTGTGAGCAGATATCTCAACCAAGTACCTCAGTTGTTGAATGTGTACCAAGGGAAAGTGGATTTTCAGGATGTATGA

Protein Analysis

95

Amino Acids

10.67

Weight (kDa)

4.84

Isoelectric Point (pI)

19.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11540
fragaria_vesca FvH4_2g35870
malus_domestica MD08G1116100.v1.1 MD15G1095800.v1.1
prunus_persica Prupe.1G450800_v2.0.a1
pyrus_communis pycom08g09690 pycom15g08810
rosa_chinensis RchiOBHm_Chr6g0305951
rosa_laevigata RLG00000010843
rosa_multiflora Rmu_sc0001809.1_g000053
rosa_roxburghii Rroxscaffold_7G00162190
rosa_rugosa Rorug06G0345600
rosa_samantha Rh6AG457300 Rh6BG443800 Rh6CG471300 Rh6DG457800
rosa_wichuraiana Rw6G039900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 197, 237, 257
AgsI TTSAA 2 cut(s) 137, 250
Asp700I GAANNNNTTC 1 cut(s) 197
BccI CCATC 1 cut(s) 74
BmcAI AGTACT 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 105, 259
BseDI CCNNGG 2 cut(s) 105, 259
BseGI GGATG 2 cut(s) 100, 286
BseMII CTCAG 1 cut(s) 254
Bsp143I GATC 1 cut(s) 130
BspCNI CTCAG 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 105, 259
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 2 cut(s) 105, 259
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 68, 240
BstF5I GGATG 2 cut(s) 100, 286
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 100, 286
Csp6I GTAC 3 cut(s) 196, 236, 256
CviJI RGCY 1 cut(s) 85
CviKI_1 RGCY 1 cut(s) 85
CviQI GTAC 3 cut(s) 196, 236, 256
DdeI CTNAG 2 cut(s) 68, 240
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 2 cut(s) 105, 259
Eco32I GATATC 1 cut(s) 224
EcoRV GATATC 1 cut(s) 224
EcoT14I CCWWGG 2 cut(s) 105, 259
ErhI CCWWGG 2 cut(s) 105, 259
FaiI YATR 3 cut(s) 33, 167, 286
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 185, 217
FokI GGATG 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 171
HinfI GANTC 1 cut(s) 97
Hpy166II GTNNAC 2 cut(s) 74, 256
Hpy188III TCNNGA 5 cut(s) 6, 134, 188, 202, 278
Hpy8I GTNNAC 2 cut(s) 74, 256
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 157
HpyF3I CTNAG 2 cut(s) 68, 240
HpySE526I ACGT 1 cut(s) 157
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 2 cut(s) 201, 263
MaeII ACGT 1 cut(s) 157
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 53, 104
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 2 cut(s) 146, 249
MroXI GAANNNNTTC 1 cut(s) 197
NdeII GATC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 97
RsaI GTAC 3 cut(s) 197, 237, 257
RsaNI GTAC 3 cut(s) 196, 236, 256
Sau3AI GATC 1 cut(s) 130
ScaI AGTACT 1 cut(s) 197
SetI ASST 3 cut(s) 111, 160, 241
SgeI CNNG 9 cut(s) 18, 89, 98, 118, 146, 200, 214, 245, 272
StyI CCWWGG 2 cut(s) 105, 259
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 160
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 97
TspDTI ATGAA 2 cut(s) 162, 182
XmnI GAANNNNTTC 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.