Rorug06G0478700

Domain of unknown function (DUF1929)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0018842
Physical Location & Seq
Forward (+)
60041228 .. 60043649
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0478700.1

Sequence Viewer

Length: 1224 bp
ATGGAAAGCGGGCTTCCCATGCTCAACTGTTTGTTGCAGCACACACTCAGAAGCTTGTGTTCATGTTCATCAGATTCCTCTTCCAATTCTTCCAAGTGGGTTTATGCCGTCTTCTGGAGAATCTTGCCTCGGAACTATCCTCCTCCGAAGTGGGATTATGGAAGTAGTGTCCTTGATCGCTCCAAAGGAAACAAAAGGAACTGGATTCTTGTTTGGGAGGATGGGTTCTGTGATTTCTATGAATGTGAACAAGCAGGAAGTGGCTACTTAAAGGGGAGGTTTGGAGCTGATATTTTCTTCAAAATGTCCCATGAGGTTTATAATTTTGGAGAAGGTTTATTGGGGAAAGTAGCAGTAGACAATAGTCATAAATGGGTGTTCAGAGATGCACCAAATCAAGTGGACAACCCCAACTTCATTTCCTCTTGGAATGTATCCACTGAACCTCAACCAAAGGCATGGGCGTTTCAATTCAATTCAGGCATTCAGACTATTGCCATCATTTCTGTTAGAGAAGGCATAATTCAGCTTGGCTCGTTTGATAAGATAGCGGAAGATCTCAATCTGGTGATCAGCATACAGAGGAAGTTCAGCTACCTGCAGAGCATACCAGGTATTTTCGCCATGCAAAGGCCTTACCTACCTATCCAGCATCCCTACATCCTCAAAGCAAGTAACGCCCAGAATATGATTATGAATGGAAGCACTAGTACGTACACTGCTACTACTACTAGTATTGGTGCTGGGGTTAAGAGATTGTTCAACCTCACACCGCCGGATGATCAGATGATCAAGTCCATCAACTTGGGATGGAACACTCCACAAAATGGAATAGGACTAGGACTCGGAGGATCATCATCCGTTTCAGTACCTGATCCTAATTGGTCGGTTCCATTTCCACCGCCTCTTCTACCCTCCATTTCATGCAGCCTTGGAGCTCTTCTATCAAAGCTACCTTCTGTTTCACCTTATTCCCCTTATATTAATGATGCCATTCATGAAGCTCCCAACACTATTACTACATCTACTACTACAGCTATGCTCATGAACAACAGCAACAACCACAACAACAATTGTGCCGAAAACAAGATACTGAAGGTTAGTGGTGGCATTATTAAGATAGAGTCATCATCACCATCATCCTGTCATTTAGATGTAGCTCAACAAGAAAAGCACAGTTCCATAGACCCTAATAATCTTGGTTTGGAAAAAGGACAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

407

Amino Acids

44.76

Weight (kDa)

7.06

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 12 - 80 2.6e-07 bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N PF14215 99 - 197 2.7e-18 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g10860
prunus_persica Prupe.5G130200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0187131
rosa_laevigata RLG00000004800
rosa_multiflora Rmu_sc0001758.1_g000035
rosa_roxburghii Rroxscaffold_3G00267680
rosa_rugosa Rorug06G0478700
rosa_samantha Rh7CG085400
rosa_wichuraiana Rw7G007430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 606
AccB7I CCANNNNNTGG 1 cut(s) 827
AccI GTMKAC 1 cut(s) 357
AciI CCGC 4 cut(s) 9, 551, 773, 902
AclWI GGATC 2 cut(s) 859, 869
AcuI CTGAAG 1 cut(s) 1115
AfaI GTAC 3 cut(s) 712, 716, 870
AfiI CCNNNNNNNGG 3 cut(s) 114, 630, 827
AgsI TTSAA 4 cut(s) 301, 470, 475, 763
AhlI ACTAGT 2 cut(s) 707, 731
AjnI CCWGG 1 cut(s) 610
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 9 cut(s) 54, 287, 529, 594, 938, 952, 1004, 1037, 1160
AluI AGCT 9 cut(s) 54, 287, 529, 594, 938, 952, 1004, 1037, 1160
Alw21I GWGCWC 1 cut(s) 940
AlwI GGATC 2 cut(s) 859, 869
AlwNI CAGNNNCTG 1 cut(s) 872
AoxI GGCC 1 cut(s) 632
ApeKI GCWGC 2 cut(s) 37, 927
AseI ATTAAT 1 cut(s) 984
AsuHPI GGTGA 3 cut(s) 580, 957, 1125
BanII GRGCYC 1 cut(s) 940
BarI GAAGNNNNNNTAC 4 cut(s) 578, 610, 694, 726
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 940
BbvI GCAGC 2 cut(s) 49, 939
BccI CCATC 5 cut(s) 215, 506, 804, 806, 1144
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 1 cut(s) 445
BclI TGATCA 3 cut(s) 570, 781, 789
BcuI ACTAGT 2 cut(s) 707, 731
BfaI CTAG 3 cut(s) 708, 732, 839
BfmI CTRYAG 2 cut(s) 599, 1032
BfuAI ACCTGC 1 cut(s) 606
BfuI GTATCC 1 cut(s) 445
BglII AGATCT 1 cut(s) 556
BisI GCNGC 2 cut(s) 38, 928
BlsI GCNGC 2 cut(s) 39, 929
Bme1390I CCNGG 1 cut(s) 612
BmiI GGNNCC 1 cut(s) 891
BmrFI CCNGG 1 cut(s) 612
BmsI GCATC 3 cut(s) 376, 661, 979
BoxI GACNNNNGTC 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 136
BsaAI YACGTR 1 cut(s) 714
BsaBI GATNNNNATC 2 cut(s) 561, 856
BsaJI CCNNGG 2 cut(s) 128, 931
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 630, 827
Bse1I ACTGG 1 cut(s) 206
Bse8I GATNNNNATC 2 cut(s) 561, 856
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 2 cut(s) 128, 931
BseGI GGATG 7 cut(s) 226, 652, 660, 784, 815, 857, 1139
BseJI GATNNNNATC 2 cut(s) 561, 856
BseLI CCNNNNNNNGG 3 cut(s) 114, 630, 827
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 2 cut(s) 49, 939
BseYI CCCAGC 1 cut(s) 743
BshFI GGCC 1 cut(s) 634
BsiHKAI GWGCWC 1 cut(s) 940
BsiSI CCGG 1 cut(s) 776
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 3 cut(s) 114, 630, 827
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 1 cut(s) 634
Bsp1286I GDGCHC 1 cut(s) 940
Bsp143I GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
BspACI CCGC 4 cut(s) 9, 551, 773, 902
BspANI GGCC 1 cut(s) 634
BspCNI CTCAG 1 cut(s) 60
BspHI TCATGA 2 cut(s) 997, 1044
BspLI GGNNCC 1 cut(s) 891
BspMAI CTGCAG 1 cut(s) 603
BspMI ACCTGC 1 cut(s) 606
BspPI GGATC 2 cut(s) 859, 869
BspQI GCTCTTC 1 cut(s) 945
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 128, 931
BssMI GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
BssT1I CCWWGG 1 cut(s) 931
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 2 cut(s) 29, 1178
Bst6I CTCTTC 3 cut(s) 85, 912, 945
BstBAI YACGTR 1 cut(s) 714
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 7 cut(s) 226, 652, 660, 784, 815, 857, 1139
BstKTI GATC 7 cut(s) 178, 559, 573, 784, 792, 854, 877
BstMBI GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
BstMWI GCNNNNNNNGC 2 cut(s) 19, 677
BstNI CCWGG 1 cut(s) 612
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 610
BstSFI CTRYAG 2 cut(s) 599, 1032
BstSNI TACGTA 1 cut(s) 714
BstV1I GCAGC 2 cut(s) 49, 939
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 556
BstXI CCANNNNNNTGG 2 cut(s) 459, 805
BstYI RGATCY 1 cut(s) 556
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 634
BtsCI GGATG 7 cut(s) 226, 652, 660, 784, 815, 857, 1139
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 2 cut(s) 438, 717
BveI ACCTGC 1 cut(s) 606
Cac8I GCNNGC 1 cut(s) 11
CaiI CAGNNNCTG 1 cut(s) 872
CciI TCATGA 2 cut(s) 997, 1044
CsiI ACCWGGT 1 cut(s) 610
Csp6I GTAC 3 cut(s) 711, 715, 869
CspCI CAANNNNNGTGG 2 cut(s) 381, 416
CviAII CATG 8 cut(s) 19, 63, 311, 459, 625, 924, 998, 1045
CviQI GTAC 3 cut(s) 711, 715, 869
DdeI CTNAG 1 cut(s) 47
DpnI GATC 7 cut(s) 177, 558, 572, 783, 791, 853, 876
DpnII GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
Eam1104I CTCTTC 3 cut(s) 85, 912, 945
EarI CTCTTC 3 cut(s) 85, 912, 945
Ecl136II GAGCTC 1 cut(s) 938
Eco105I TACGTA 1 cut(s) 714
Eco130I CCWWGG 1 cut(s) 931
Eco147I AGGCCT 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 940
Eco53kI GAGCTC 1 cut(s) 938
Eco57I CTGAAG 1 cut(s) 1115
EcoICRI GAGCTC 1 cut(s) 938
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 1 cut(s) 931
EcoT38I GRGCYC 1 cut(s) 940
ErhI CCWWGG 1 cut(s) 931
FaeI CATG 8 cut(s) 22, 66, 314, 462, 628, 927, 1001, 1048
FaqI GGGAC 1 cut(s) 292
FatI CATG 8 cut(s) 18, 62, 310, 458, 624, 923, 997, 1044
FauI CCCGC 1 cut(s) 2
FbaI TGATCA 3 cut(s) 570, 781, 789
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 38, 928
FokI GGATG 7 cut(s) 233, 639, 647, 791, 822, 844, 1126
FriOI GRGCYC 1 cut(s) 940
Fsp4HI GCNGC 2 cut(s) 38, 928
FspBI CTAG 3 cut(s) 708, 732, 839
GluI GCNGC 2 cut(s) 38, 928
GsaI CCCAGC 1 cut(s) 747
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 1 cut(s) 634
HapII CCGG 1 cut(s) 776
Hin1II CATG 8 cut(s) 22, 66, 314, 462, 628, 927, 1001, 1048
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 5 cut(s) 74, 120, 205, 843, 1124
HpaII CCGG 1 cut(s) 776
HphI GGTGA 3 cut(s) 580, 957, 1125
Hpy166II GTNNAC 4 cut(s) 248, 358, 403, 717
Hpy188I TCNGA 8 cut(s) 50, 73, 132, 147, 383, 489, 786, 848
Hpy188III TCNNGA 3 cut(s) 115, 998, 1045
Hpy8I GTNNAC 4 cut(s) 248, 358, 403, 717
HpyAV CCTTC 4 cut(s) 326, 509, 966, 1090
HpyCH4III ACNGT 2 cut(s) 29, 1178
HpyCH4IV ACGT 1 cut(s) 713
HpyCH4V TGCA 5 cut(s) 37, 389, 601, 628, 927
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 677
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 713
Hsp92II CATG 8 cut(s) 22, 66, 314, 462, 628, 927, 1001, 1048
Ksp22I TGATCA 3 cut(s) 570, 781, 789
Kzo9I GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
LguI GCTCTTC 1 cut(s) 945
LmnI GCTCC 4 cut(s) 185, 284, 935, 1009
Lsp1109I GCAGC 2 cut(s) 49, 939
LweI GCATC 3 cut(s) 376, 661, 979
MabI ACCWGGT 1 cut(s) 610
MaeI CTAG 3 cut(s) 708, 732, 839
MaeII ACGT 1 cut(s) 713
MaeIII GTNAC 1 cut(s) 674
MalI GATC 7 cut(s) 177, 558, 572, 783, 791, 853, 876
MboI GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
MboII GAAGA 7 cut(s) 72, 81, 103, 289, 566, 899, 932
MfeI CAATTG 1 cut(s) 1072
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 940
MluCI AATT 7 cut(s) 85, 322, 470, 475, 522, 880, 1072
MlyI GAGTC 2 cut(s) 837, 1133
MseI TTAA 5 cut(s) 269, 750, 984, 1116, 1222
MslI CAYNNNNRTG 1 cut(s) 1152
MspI CCGG 1 cut(s) 776
MspR9I CCNGG 1 cut(s) 612
MunI CAATTG 1 cut(s) 1072
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 2 cut(s) 19, 677
NdeII GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
NlaIII CATG 8 cut(s) 22, 66, 314, 462, 628, 927, 1001, 1048
NlaIV GGNNCC 1 cut(s) 891
PagI TCATGA 2 cut(s) 997, 1044
PceI AGGCCT 1 cut(s) 634
PciSI GCTCTTC 1 cut(s) 945
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 3 cut(s) 74, 120, 205
PflMI CCANNNNNTGG 1 cut(s) 827
PkrI GCNGC 2 cut(s) 39, 929
PleI GAGTC 2 cut(s) 837, 1132
PpsI GAGTC 2 cut(s) 837, 1132
Ppu21I YACGTR 1 cut(s) 714
PshAI GACNNNNGTC 1 cut(s) 363
PshBI ATTAAT 1 cut(s) 984
PsiI TTATAA 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 940
Psp6I CCWGG 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 1 cut(s) 891
PstI CTGCAG 1 cut(s) 603
PstNI CAGNNNCTG 1 cut(s) 872
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 3 cut(s) 712, 716, 870
RsaNI GTAC 3 cut(s) 711, 715, 869
RseI CAYNNNNRTG 1 cut(s) 1152
SacI GAGCTC 1 cut(s) 940
SapI GCTCTTC 1 cut(s) 945
SaqAI TTAA 5 cut(s) 269, 750, 984, 1116, 1222
SatI GCNGC 2 cut(s) 38, 928
Sau3AI GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
SchI GAGTC 2 cut(s) 837, 1133
ScrFI CCNGG 1 cut(s) 612
SduI GDGCHC 1 cut(s) 940
SexAI ACCWGGT 1 cut(s) 610
SfaNI GCATC 3 cut(s) 376, 661, 979
SfcI CTRYAG 2 cut(s) 599, 1032
SmiMI CAYNNNNRTG 1 cut(s) 1152
SnaBI TACGTA 1 cut(s) 714
SpeI ACTAGT 2 cut(s) 707, 731
Sse9I AATT 7 cut(s) 85, 322, 470, 475, 522, 880, 1072
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 4 cut(s) 9, 551, 773, 902
SspMI CTAG 3 cut(s) 708, 732, 839
SstI GAGCTC 1 cut(s) 940
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 1 cut(s) 610
StyI CCWWGG 1 cut(s) 931
TaaI ACNGT 2 cut(s) 29, 1178
TaiI ACGT 1 cut(s) 716
TasI AATT 7 cut(s) 85, 322, 470, 475, 522, 880, 1072
TfiI GAWTC 3 cut(s) 74, 120, 205
Tru1I TTAA 5 cut(s) 269, 750, 984, 1116, 1222
Tru9I TTAA 5 cut(s) 269, 750, 984, 1116, 1222
TscAI CASTG 2 cut(s) 445, 724
TseI GCWGC 2 cut(s) 37, 927
TspDTI ATGAA 9 cut(s) 51, 57, 255, 406, 710, 912, 986, 1014, 1061
TspGWI ACGGA 1 cut(s) 850
TspRI CASTG 2 cut(s) 445, 724
Van91I CCANNNNNTGG 1 cut(s) 827
VspI ATTAAT 1 cut(s) 984
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 3 cut(s) 708, 732, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.