Rorug07G0137500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016858
Physical Location & Seq
Reverse (-)
10850428 .. 10854241
3814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0137500.1

Sequence Viewer

Length: 618 bp
ATGGCGGCCGGTAAACCCCTCACAACTGAGGCCATTGCTCTTACAGAGAAGAAGATGGACATGGCATTAGATGACATTATTAAAATGGCCAAAGTTGCTCCCAAGGGTAAGAAGCAACGGAGGGTTTCGAACAAAAGTCAGACTTTTCTTAAGGGTACTGCTCAAGATAAACCAACAAAGCTACGTTGCTTTATGGACACAAGATCATCCCTTAGACAGGGGGTTCTGGCTCAGAGAAGGTCAAACTTCCAGGGGAACCAATTCCCGATTGCAACTGAGGCTGCACGGAAGGCAGCAGTTGTTCCTCTTCGCAATAGAGCTTTTAATCGTAACAGGGTGCCTAACTGGAAACCAAGGGCTGGTGCTCCTAATCAGAGAAGGGCTGGAAATGTTGGCTTTGGTACCAAGCTTCCCCCACAGCAGCAGCCGCAGCAGCGTCAGCAGCAGCAAGAGAATGTAGTTGCTAATCAGAGGCCTCAAACACTTGATTTGCTGTTTGCAAACATGAAGGAGCAAAGGATGAGGGCCCAACCACCACGCCAGAACAATGCCGTACCACAACGTAATAGGGGCCAGCCAAGGCTTCCTTGGGGAAGAGGCGGGCGATTTGGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.16

Weight (kDa)

11.98

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016858)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g23600
malus_domestica MD00G1000300.v1.1
prunus_persica Prupe.5G024200_v2.0.a1
pyrus_communis pycom16g25370
rosa_chinensis RchiOBHm_Chr7g0212901
rosa_laevigata RLG00000002857
rosa_multiflora Rmu_ssc0000491.1_g000003
rosa_roxburghii Rroxscaffold_3G00246440
rosa_rugosa Rorug07G0137500
rosa_samantha Rh7AG269100 Rh7BG264700 Rh7CG288300 Rh7DG277300
rosa_wichuraiana Rw7G023380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 401
AccB1I GGYRCC 2 cut(s) 337, 401
AccB7I CCANNNNNTGG 1 cut(s) 359
AciI CCGC 3 cut(s) 5, 428, 600
AcoI YGGCCR 2 cut(s) 6, 87
AfaI GTAC 3 cut(s) 157, 403, 555
AfiI CCNNNNNNNGG 2 cut(s) 217, 359
AflII CTTAAG 1 cut(s) 149
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 3 cut(s) 181, 320, 409
AluI AGCT 3 cut(s) 181, 320, 409
Alw21I GWGCWC 1 cut(s) 367
AoxI GGCC 6 cut(s) 6, 30, 87, 473, 525, 571
ApaI GGGCCC 1 cut(s) 529
ApeKI GCWGC 8 cut(s) 281, 293, 421, 424, 430, 433, 442, 445
Asp700I GAANNNNTTC 1 cut(s) 260
Asp718I GGTACC 1 cut(s) 401
AspS9I GGNCC 3 cut(s) 525, 526, 571
AsuII TTCGAA 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 529
BalI TGGCCA 1 cut(s) 89
BanI GGYRCC 2 cut(s) 337, 401
BanII GRGCYC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 8 cut(s) 268, 305, 433, 436, 442, 445, 454, 457
BccI CCATC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 536
BciT130I CCWGG 1 cut(s) 251
BfrI CTTAAG 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 251
BmgT120I GGNCC 3 cut(s) 525, 526, 571
BmiI GGNNCC 5 cut(s) 257, 339, 403, 527, 572
BmrFI CCNGG 1 cut(s) 251
Bpu14I TTCGAA 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 147
BsaJI CCNNGG 5 cut(s) 102, 250, 353, 578, 587
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 359
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 5 cut(s) 102, 250, 353, 578, 587
BseGI GGATG 2 cut(s) 206, 525
BseLI CCNNNNNNNGG 2 cut(s) 217, 359
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 18, 245, 267
BseNI ACTGG 1 cut(s) 350
BseSI GKGCMC 1 cut(s) 529
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 8 cut(s) 268, 305, 433, 436, 442, 445, 454, 457
BsgI GTGCAG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 6 cut(s) 8, 32, 89, 475, 527, 573
BshNI GGYRCC 2 cut(s) 337, 401
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 367
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 217, 359
BsnI GGCC 6 cut(s) 8, 32, 89, 475, 527, 573
Bsp119I TTCGAA 1 cut(s) 128
Bsp120I GGGCCC 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 367, 529
Bsp143I GATC 1 cut(s) 203
BspACI CCGC 3 cut(s) 5, 428, 600
BspANI GGCC 6 cut(s) 8, 32, 89, 475, 527, 573
BspCNI CTCAG 3 cut(s) 19, 244, 268
BspLI GGNNCC 5 cut(s) 257, 339, 403, 527, 572
BspT104I TTCGAA 1 cut(s) 128
BspT107I GGYRCC 2 cut(s) 337, 401
BspTI CTTAAG 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 5 cut(s) 102, 250, 353, 578, 587
BssMI GATC 1 cut(s) 203
BssT1I CCWWGG 4 cut(s) 102, 353, 578, 587
Bst2UI CCWGG 1 cut(s) 251
Bst6I CTCTTC 2 cut(s) 312, 589
BstAFI CTTAAG 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 575, 602
BstDEI CTNAG 4 cut(s) 27, 212, 231, 276
BstENI CCTNNNNNAGG 1 cut(s) 215
BstF5I GGATG 2 cut(s) 206, 525
BstKTI GATC 1 cut(s) 206
BstMBI GATC 1 cut(s) 203
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 8 cut(s) 95, 278, 290, 427, 430, 433, 439, 442
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 529
BstV1I GCAGC 8 cut(s) 268, 305, 433, 436, 442, 445, 454, 457
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 6 cut(s) 8, 32, 89, 475, 527, 573
BtsCI GGATG 2 cut(s) 206, 525
Cac8I GCNNGC 2 cut(s) 575, 602
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 3 cut(s) 525, 526, 571
CseI GACGC 1 cut(s) 425
Csp6I GTAC 3 cut(s) 156, 402, 554
CviAII CATG 2 cut(s) 61, 505
CviQI GTAC 3 cut(s) 156, 402, 554
DdeI CTNAG 4 cut(s) 27, 212, 231, 276
DpnI GATC 1 cut(s) 205
DpnII GATC 1 cut(s) 203
EaeI YGGCCR 2 cut(s) 6, 87
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 312, 589
EarI CTCTTC 2 cut(s) 312, 589
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 4 cut(s) 102, 353, 578, 587
Eco147I AGGCCT 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 529
Eco52I CGGCCG 1 cut(s) 6
EcoNI CCTNNNNNAGG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 4 cut(s) 102, 353, 578, 587
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 4 cut(s) 102, 353, 578, 587
FaeI CATG 2 cut(s) 64, 508
FaiI YATR 3 cut(s) 62, 194, 506
FalI AAGNNNNNCTT 4 cut(s) 127, 159, 571, 603
FatI CATG 2 cut(s) 60, 504
FauI CCCGC 1 cut(s) 593
FokI GGATG 2 cut(s) 193, 532
FriOI GRGCYC 1 cut(s) 529
HaeIII GGCC 6 cut(s) 8, 32, 89, 475, 527, 573
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 425
Hin1II CATG 2 cut(s) 64, 508
HindIII AAGCTT 1 cut(s) 407
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 4 cut(s) 141, 234, 375, 471
Hpy188III TCNNGA 2 cut(s) 164, 265
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 4 cut(s) 231, 283, 372, 502
HpyCH4IV ACGT 2 cut(s) 184, 562
HpyCH4V TGCA 3 cut(s) 272, 284, 500
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 278, 290, 427, 430, 433, 439, 442
HpyF3I CTNAG 4 cut(s) 27, 212, 231, 276
HpySE526I ACGT 2 cut(s) 184, 562
Hsp92II CATG 2 cut(s) 64, 508
KpnI GGTACC 1 cut(s) 405
Kzo9I GATC 1 cut(s) 203
LmnI GCTCC 3 cut(s) 103, 370, 511
Lsp1109I GCAGC 8 cut(s) 268, 305, 433, 436, 442, 445, 454, 457
MaeII ACGT 2 cut(s) 184, 562
MaeIII GTNAC 1 cut(s) 329
MalI GATC 1 cut(s) 205
MboI GATC 1 cut(s) 203
MboII GAAGA 4 cut(s) 61, 64, 299, 606
MhlI GDGCHC 2 cut(s) 367, 529
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 1 cut(s) 260
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 9 cut(s) 22, 29, 114, 271, 315, 465, 486, 516, 590
Mox20I TGGCCA 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 89
MseI TTAA 3 cut(s) 81, 150, 324
Msp20I TGGCCA 1 cut(s) 89
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 8 cut(s) 95, 278, 290, 427, 430, 433, 439, 442
NdeII GATC 1 cut(s) 203
NlaIII CATG 2 cut(s) 64, 508
NlaIV GGNNCC 5 cut(s) 257, 339, 403, 527, 572
NspV TTCGAA 1 cut(s) 128
PceI AGGCCT 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 5 cut(s) 257, 339, 403, 527, 572
PspOMI GGGCCC 1 cut(s) 525
PspPI GGNCC 3 cut(s) 525, 526, 571
RsaI GTAC 3 cut(s) 157, 403, 555
RsaNI GTAC 3 cut(s) 156, 402, 554
SaqAI TTAA 3 cut(s) 81, 150, 324
Sau3AI GATC 1 cut(s) 203
Sau96I GGNCC 3 cut(s) 525, 526, 571
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 2 cut(s) 367, 529
SetI ASST 6 cut(s) 183, 187, 242, 322, 411, 565
SfuI TTCGAA 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 149, 162
SmoI CTYRAG 2 cut(s) 149, 162
Sse9I AATT 1 cut(s) 260
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 3 cut(s) 5, 428, 600
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 4 cut(s) 102, 353, 578, 587
TaiI ACGT 2 cut(s) 187, 565
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 260
TauI GCSGC 2 cut(s) 8, 430
Tru1I TTAA 3 cut(s) 81, 150, 324
Tru9I TTAA 3 cut(s) 81, 150, 324
TseI GCWGC 8 cut(s) 281, 293, 421, 424, 430, 433, 442, 445
TspDTI ATGAA 1 cut(s) 521
TspGWI ACGGA 2 cut(s) 133, 301
Van91I CCANNNNNTGG 1 cut(s) 359
Vha464I CTTAAG 1 cut(s) 149
XagI CCTNNNNNAGG 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 585
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.