Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0020797

Physical Location & Seq

Genomic Coordinates Reverse (-)

2941259 .. 2941570

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG017300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAGCATGACAGAGGCGCTGACATGTGCTACCTGCGATGATCAAGATTTGCGTCACAAGCACCCTCGCCATCATTTTGACGAAGAAGAAAGCAAGGCCGCGGGTGAGGATATGGAAACTCCTCCGCCTCTTGTTATGTTATCTCCTTCAAATAGTCCTAAGCCGGCTGAGGGTGTGGAAGAAGGTGAAATTCTTGAGGACGGTGCGATGGTTATGACGATAGTGTTTGGGAAACAAAAGTGGACTTTGGTGACGAGTCTAGTGAAATTGAAGCTCCTGAAGTTTGCGAACATTCTGATTAGCAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase TBPIP

Protein Analysis

103

Amino Acids

11.43

Weight (kDa)

5.11

Isoelectric Point (pI)

58.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020797)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG017300 Rh1BG009700 Rh5BG440700 Rh5CG463400 Rh6BG140900 Rh6DG124200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	41
AccII	CGCG	1 cut(s)	101
AciI	CCGC	3 cut(s)	99, 101, 125
AcsI	RAATTY	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	150, 271
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
AoxI	GGCC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	19
AsuHPI	GGTGA	3 cut(s)	116, 197, 262
BbvCI	CCTCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	78, 202
BclI	TGATCA	1 cut(s)	40
BfaI	CTAG	2 cut(s)	260, 310
BfoI	RGCGCY	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bpu10I	CCTNAGC	2 cut(s)	159, 168
BpuEI	CTTGAG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	170
BsnI	GGCC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	3 cut(s)	99, 101, 125
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	159, 168
BstDSI	CCRYGG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	27
BstUI	CGCG	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	2 cut(s)	51, 221
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	163
Cfr42I	CCGCGG	1 cut(s)	102
CseI	GACGC	1 cut(s)	41
CviAII	CATG	2 cut(s)	7, 24
CviJI	RGCY	4 cut(s)	98, 163, 167, 274
CviKI_1	RGCY	4 cut(s)	98, 163, 167, 274
DdeI	CTNAG	2 cut(s)	159, 168
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	299
FaeI	CATG	2 cut(s)	10, 27
FaiI	YATR	5 cut(s)	8, 25, 113, 137, 215
FatI	CATG	2 cut(s)	6, 23
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	260, 310
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	10, 27
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	3 cut(s)	116, 197, 262
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	3 cut(s)	44, 194, 277
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	156, 176
HpyCH4III	ACNGT	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	159, 168
Hsp92II	CATG	2 cut(s)	10, 27
HspAI	GCGC	1 cut(s)	17
KroI	GCCGGC	1 cut(s)	163
KroNI	GCCGGC	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	40
KspI	CCGCGG	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	3 cut(s)	46, 177, 290
MaeI	CTAG	2 cut(s)	260, 310
MaeIII	GTNAC	2 cut(s)	53, 250
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	3 cut(s)	95, 98, 191
MluCI	AATT	2 cut(s)	189, 266
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	7 cut(s)	7, 75, 100, 132, 138, 163, 190
MroNI	GCCGGC	1 cut(s)	163
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	58
NaeI	GCCGGC	1 cut(s)	165
NdeII	GATC	1 cut(s)	40
NgoMIV	GCCGGC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	10, 27
NmuCI	GTSAC	2 cut(s)	53, 250
NspI	RCATGY	1 cut(s)	27
PciI	ACATGT	1 cut(s)	23
PdiI	GCCGGC	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PscI	ACATGT	1 cut(s)	23
SacII	CCGCGG	1 cut(s)	102
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	265
SetI	ASST	3 cut(s)	35, 187, 276
Sfr303I	CCGCGG	1 cut(s)	102
SgrBI	CCGCGG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	189, 266
SsiI	CCGC	3 cut(s)	99, 101, 125
SspMI	CTAG	2 cut(s)	260, 310
TaaI	ACNGT	1 cut(s)	203
TasI	AATT	2 cut(s)	189, 266
TauI	GCSGC	1 cut(s)	101
TseFI	GTSAC	2 cut(s)	53, 250
Tsp45I	GTSAC	2 cut(s)	53, 250
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	2 cut(s)	260, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.