Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0020797

Physical Location & Seq

Genomic Coordinates Forward (+)

70832756 .. 70833046

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG440700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTGTGCTGCCTGCGATGACCAAGATTTGCGTCACAAGCACCCTCGCCATCATTCGTTAGAAGAAGAAAGCAAGGCTGCGGGTGAGGATATGGAAACTCCTCCGCCTCTTGTTATGTTATCTCCTTCAAATAGTCCTCGGCCGGCGGAGGACATGGAGGAAGGTGAAATTCTTGAGGACGGTGTGGTGGTTGTGACGACAGTGTTTTGGAAACAAAAGCGGACTTTGGTGCCGAGTATGGTGAAATTGAAGCTCCTGAAGTTCGCGAACGTTTTGATTAGCAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase TBPIP

Protein Analysis

96

Amino Acids

10.78

Weight (kDa)

5.5

Isoelectric Point (pI)

69.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020797)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG017300 Rh1BG009700 Rh5BG440700 Rh5CG463400 Rh6BG140900 Rh6DG124200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccII	CGCG	1 cut(s)	266
AciI	CCGC	4 cut(s)	80, 104, 146, 220
AclI	AACGTT	1 cut(s)	270
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	129, 250
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	8, 77
ApoI	RAATTY	1 cut(s)	168
AsuHPI	GGTGA	3 cut(s)	95, 176, 253
BanI	GGYRCC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	289
BisI	GCNGC	2 cut(s)	9, 78
BlsI	GCNGC	2 cut(s)	10, 79
BmiI	GGNNCC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	143
BsnI	GGCC	1 cut(s)	142
Bsp68I	TCGCGA	1 cut(s)	266
BspACI	CCGC	4 cut(s)	80, 104, 146, 220
BspANI	GGCC	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	182, 202
BstC8I	GCNNGC	2 cut(s)	13, 144
BstFNI	CGCG	1 cut(s)	266
BstMCI	CGRYCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	64
BstZI	CGGCCG	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	207
BtuMI	TCGCGA	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	13, 144
Cfr10I	RCCGGY	1 cut(s)	142
CseI	GACGC	1 cut(s)	20
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	3 cut(s)	77, 142, 253
CviKI_1	RGCY	3 cut(s)	77, 142, 253
EaeI	YGGCCR	1 cut(s)	140
EagI	CGGCCG	1 cut(s)	140
EciI	GGCGGA	2 cut(s)	93, 161
EclXI	CGGCCG	1 cut(s)	140
Eco52I	CGGCCG	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	278
FaeI	CATG	1 cut(s)	157
FaiI	YATR	4 cut(s)	92, 116, 155, 239
FatI	CATG	1 cut(s)	153
FauI	CCCGC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	9, 78
Fsp4HI	GCNGC	2 cut(s)	9, 78
FspBI	CTAG	1 cut(s)	289
GluI	GCNGC	2 cut(s)	9, 78
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	157
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	3 cut(s)	95, 176, 253
Hpy188III	TCNNGA	3 cut(s)	173, 256, 265
HpyAV	CCTTC	2 cut(s)	135, 155
HpyCH4III	ACNGT	2 cut(s)	182, 202
HpyCH4IV	ACGT	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	157
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	3 cut(s)	25, 156, 269
Lsp1109I	GCAGC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	289
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	32, 193
MboII	GAAGA	2 cut(s)	74, 77
MluCI	AATT	2 cut(s)	168, 245
MnlI	CCTC	8 cut(s)	54, 79, 111, 117, 142, 147, 151, 169
MroNI	GCCGGC	1 cut(s)	142
MspI	CCGG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	37
NaeI	GCCGGC	1 cut(s)	144
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	231
NmeAIII	GCCGAG	2 cut(s)	118, 258
NmuCI	GTSAC	2 cut(s)	32, 193
NruI	TCGCGA	1 cut(s)	266
PdiI	GCCGGC	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	10, 79
Psp1406I	AACGTT	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	231
RruI	TCGCGA	1 cut(s)	266
SatI	GCNGC	2 cut(s)	9, 78
SetI	ASST	3 cut(s)	166, 255, 273
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	168, 245
SsiI	CCGC	4 cut(s)	80, 104, 146, 220
SspMI	CTAG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	182, 202
TaiI	ACGT	1 cut(s)	273
TasI	AATT	2 cut(s)	168, 245
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	2 cut(s)	32, 193
TseI	GCWGC	2 cut(s)	8, 77
Tsp45I	GTSAC	2 cut(s)	32, 193
TspRI	CASTG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	168
XspI	CTAG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.