Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0020797

Physical Location & Seq

Genomic Coordinates Reverse (-)

1157805 .. 1158098

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG009700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCGTGTGCTGCCTGCGACGAACAAGATTTGCGTCACAAGCACCCTCGCCATCATTTCGACGAAGAAGAAAGCAAGGCCGCGGGTGAGGATATGGAAACTCATCCGCCTCTTGTTATGTTATCTCCTTCAAATAGTCCTCAGCCGGCTGAGGATGTGGAAGAAGGTGAAATTCTTGAGGACGGTGCGGTGGTTATGACGACAGCGTTTGGGAAACAAAAGCGGACTTTGGTGCCGAGTCTAGTGAAATTGAAGCTCCTGAAGTTCGCGAACATTCTGATTAGCAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016310 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase TBPIP

Protein Analysis

97

Amino Acids

10.75

Weight (kDa)

5.26

Isoelectric Point (pI)

82.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020797)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG017300 Rh1BG009700 Rh5BG440700 Rh5CG463400 Rh6BG140900 Rh6DG124200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AccII	CGCG	2 cut(s)	83, 269
AciI	CCGC	5 cut(s)	81, 83, 107, 188, 223
AcsI	RAATTY	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	132, 253
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	98, 179
BanI	GGYRCC	1 cut(s)	232
BbvCI	CCTCAGC	2 cut(s)	141, 150
BccI	CCATC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	242, 292
BisI	GCNGC	2 cut(s)	12, 81
BlsI	GCNGC	2 cut(s)	13, 82
BmiI	GGNNCC	1 cut(s)	234
Bpu10I	CCTNAGC	2 cut(s)	141, 150
BpuEI	CTTGAG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	103, 160
BseMII	CTCAG	2 cut(s)	141, 155
Bsh1236I	CGCG	2 cut(s)	83, 269
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	146
BsnI	GGCC	1 cut(s)	80
Bsp68I	TCGCGA	1 cut(s)	269
BspACI	CCGC	5 cut(s)	81, 83, 107, 188, 223
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	2 cut(s)	142, 154
BspFNI	CGCG	2 cut(s)	83, 269
BspLI	GGNNCC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	16, 147
BstDEI	CTNAG	2 cut(s)	141, 150
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	103, 160
BstFNI	CGCG	2 cut(s)	83, 269
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 40
BstUI	CGCG	2 cut(s)	83, 269
BsuRI	GGCC	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	103, 160
BtuMI	TCGCGA	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	16, 147
Cfr10I	RCCGGY	1 cut(s)	145
Cfr42I	CCGCGG	1 cut(s)	84
CseI	GACGC	1 cut(s)	23
CviJI	RGCY	4 cut(s)	80, 145, 149, 256
CviKI_1	RGCY	4 cut(s)	80, 145, 149, 256
DdeI	CTNAG	2 cut(s)	141, 150
EciI	GGCGGA	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	281
FaiI	YATR	3 cut(s)	95, 119, 197
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	12, 81
FokI	GGATG	2 cut(s)	90, 167
Fsp4HI	GCNGC	2 cut(s)	12, 81
FspBI	CTAG	2 cut(s)	242, 292
GluI	GCNGC	2 cut(s)	12, 81
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	23
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	2 cut(s)	98, 179
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	3 cut(s)	176, 259, 268
Hpy99I	CGWCG	2 cut(s)	23, 65
HpyAV	CCTTC	2 cut(s)	138, 158
HpyCH4III	ACNGT	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 40
HpyF3I	CTNAG	2 cut(s)	141, 150
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
KspI	CCGCGG	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	3 cut(s)	28, 159, 272
MaeI	CTAG	2 cut(s)	242, 292
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	3 cut(s)	77, 80, 173
MluCI	AATT	2 cut(s)	171, 248
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	6 cut(s)	57, 82, 120, 145, 150, 172
MroNI	GCCGGC	1 cut(s)	145
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	146
MvnI	CGCG	2 cut(s)	83, 269
MwoI	GCNNNNNNNGC	2 cut(s)	11, 40
NaeI	GCCGGC	1 cut(s)	147
NgoMIV	GCCGGC	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	234
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	35
NruI	TCGCGA	1 cut(s)	269
PdiI	GCCGGC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	13, 82
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	234
RruI	TCGCGA	1 cut(s)	269
SacII	CCGCGG	1 cut(s)	84
SatI	GCNGC	2 cut(s)	12, 81
SchI	GAGTC	1 cut(s)	247
SetI	ASST	2 cut(s)	169, 258
Sfr303I	CCGCGG	1 cut(s)	84
SgrBI	CCGCGG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	171, 248
SsiI	CCGC	5 cut(s)	81, 83, 107, 188, 223
SspMI	CTAG	2 cut(s)	242, 292
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	171, 248
TauI	GCSGC	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	171
XspI	CTAG	2 cut(s)	242, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.