Rh1AG078900

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0020680
Physical Location & Seq
Forward (+)
13255513 .. 13273103
17591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG078900.1

Sequence Viewer

Length: 591 bp
ATGCCACAGCAGTCTGCAGGATCTTTTTTGCTATGCTCGCAGTTCAAGGAAGAGGTGGGGAGGTTCCAAACTGGTGAAATTGCGGGCTTAGGCTCGATGTGGTTGTGGTATAGCAACAGTGGTGGCATTCTTGGTGGTGGGCCTCCTGGACTTTTGGCTTTGCGGGTGGTTTCTTGTGCGAGCGATGGAGCCAATCAATTGAGATCGCGGTCAGATTTTGGATCCGGCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAATAGCCAACCGCCGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCTCATTGGCCAGTACTTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCAGAGTCAAATTGGCTCCAGTGCTTCAGAACATAAATGACAGCAGGTTGAATTCAATTTGTATTGTTCAAGAGGGGAAGCCACTTGGGAAGCTGCTTTTTATCACTCAAGAACTGATCTCAAAGTTTAGAGAGAAGCACAGAAACATTGCCTCAACAAATCAGTCTCTGCTGTTCTTTGCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

196

Amino Acids

21.18

Weight (kDa)

9.41

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020680)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023543
rosa_samantha Rh1AG078900 Rh3BG304900 Rh3BG305000 Rh4AG058700 Rh7DG087000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 589
AasI GACNNNNNNGTC 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 304
AccII CGCG 1 cut(s) 208
AciI CCGC 8 cut(s) 83, 163, 208, 246, 249, 269, 294, 345
AclWI GGATC 5 cut(s) 28, 216, 229, 303, 316
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 1 cut(s) 454
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 4 cut(s) 46, 454, 459, 473
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 3 cut(s) 242, 302, 496
AluI AGCT 3 cut(s) 242, 302, 496
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 5 cut(s) 28, 216, 229, 303, 316
AlwNI CAGNNNCTG 1 cut(s) 571
AoxI GGCC 2 cut(s) 140, 358
ApeKI GCWGC 1 cut(s) 496
ApoI RAATTY 1 cut(s) 454
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 360
BamHI GGATCC 2 cut(s) 221, 308
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 483
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 256
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 573
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 438
BglI GCCNNNNNGGC 1 cut(s) 357
BisI GCNGC 2 cut(s) 249, 497
BlsI GCNGC 2 cut(s) 250, 498
BmcAI AGTACT 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 7 cut(s) 65, 190, 223, 310, 340, 375, 420
BmrFI CCNGG 1 cut(s) 147
BmtI GCTAGC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 3 cut(s) 76, 361, 422
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 337
BseNI ACTGG 3 cut(s) 76, 361, 422
BseXI GCAGC 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 2 cut(s) 142, 360
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 2 cut(s) 225, 336
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 573
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 2 cut(s) 142, 360
Bsp143I GATC 6 cut(s) 20, 203, 221, 308, 330, 519
BspACI CCGC 8 cut(s) 83, 163, 208, 246, 249, 269, 294, 345
BspANI GGCC 2 cut(s) 142, 360
BspCNI CTCAG 1 cut(s) 336
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 7 cut(s) 65, 190, 223, 310, 340, 375, 420
BspMAI CTGCAG 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 438
BspOI GCTAGC 1 cut(s) 351
BspPI GGATC 5 cut(s) 28, 216, 229, 303, 316
BspT107I GGYRCC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 3 cut(s) 76, 361, 422
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 6 cut(s) 20, 203, 221, 308, 330, 519
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 6 cut(s) 38, 85, 181, 253, 294, 349
BstDEI CTNAG 2 cut(s) 88, 323
BstDSI CCRYGG 1 cut(s) 272
BstFNI CGCG 1 cut(s) 208
BstKTI GATC 6 cut(s) 23, 206, 224, 311, 333, 522
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 6 cut(s) 20, 203, 221, 308, 330, 519
BstMWI GCNNNNNNNGC 4 cut(s) 37, 248, 261, 357
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 483
BstX2I RGATCY 3 cut(s) 20, 221, 308
BstYI RGATCY 3 cut(s) 20, 221, 308
BsuRI GGCC 2 cut(s) 142, 360
BtgI CCRYGG 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 124, 429
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 6 cut(s) 38, 85, 181, 253, 294, 349
CaiI CAGNNNCTG 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 364
CspCI CAANNNNNGTGG 4 cut(s) 103, 138, 254, 289
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 2 cut(s) 88, 323
DpnI GATC 6 cut(s) 22, 205, 223, 310, 332, 521
DpnII GATC 6 cut(s) 20, 203, 221, 308, 330, 519
DrdI GACNNNNNNGTC 1 cut(s) 407
DseDI GACNNNNNNGTC 1 cut(s) 407
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 145
FaiI YATR 4 cut(s) 34, 111, 437, 589
FauI CCCGC 3 cut(s) 76, 156, 301
Fnu4HI GCNGC 2 cut(s) 249, 497
Fsp4HI GCNGC 2 cut(s) 249, 497
FspBI CTAG 1 cut(s) 348
GluI GCNGC 2 cut(s) 249, 497
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 2 cut(s) 142, 360
HapII CCGG 2 cut(s) 225, 336
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 1 cut(s) 408
HpaII CCGG 2 cut(s) 225, 336
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 6 cut(s) 214, 233, 313, 326, 373, 432
Hpy188III TCNNGA 3 cut(s) 398, 473, 512
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 17, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 248, 261, 357
HpyF3I CTNAG 2 cut(s) 88, 323
Kzo9I GATC 6 cut(s) 20, 203, 221, 308, 330, 519
LmnI GCTCC 2 cut(s) 188, 424
Lsp1109I GCAGC 1 cut(s) 483
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 379
MalI GATC 6 cut(s) 22, 205, 223, 310, 332, 521
MboI GATC 6 cut(s) 20, 203, 221, 308, 330, 519
MboII GAAGA 2 cut(s) 62, 380
MfeI CAATTG 1 cut(s) 197
MflI RGATCY 3 cut(s) 20, 221, 308
MlsI TGGCCA 1 cut(s) 360
MluCI AATT 6 cut(s) 78, 197, 234, 413, 454, 459
MluNI TGGCCA 1 cut(s) 360
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 6 cut(s) 46, 54, 153, 362, 469, 565
Mox20I TGGCCA 1 cut(s) 360
MscI TGGCCA 1 cut(s) 360
Msp20I TGGCCA 1 cut(s) 360
MspI CCGG 2 cut(s) 225, 336
MspR9I CCNGG 1 cut(s) 147
MunI CAATTG 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 126
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 4 cut(s) 37, 248, 261, 357
NdeII GATC 6 cut(s) 20, 203, 221, 308, 330, 519
NheI GCTAGC 1 cut(s) 347
NlaIV GGNNCC 7 cut(s) 65, 190, 223, 310, 340, 375, 420
NmuCI GTSAC 1 cut(s) 379
PctI GAATGC 1 cut(s) 126
PflMI CCANNNNNTGG 1 cut(s) 304
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 2 cut(s) 250, 498
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
PsiI TTATAA 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 7 cut(s) 65, 190, 223, 310, 340, 375, 420
PspPI GGNCC 1 cut(s) 140
PstI CTGCAG 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 3 cut(s) 20, 221, 308
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
SatI GCNGC 2 cut(s) 249, 497
Sau3AI GATC 6 cut(s) 20, 203, 221, 308, 330, 519
Sau96I GGNCC 1 cut(s) 140
ScaI AGTACT 1 cut(s) 365
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 1 cut(s) 147
SetI ASST 7 cut(s) 57, 65, 244, 288, 304, 452, 498
SfcI CTRYAG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 510
SmoI CTYRAG 1 cut(s) 510
Sse9I AATT 6 cut(s) 78, 197, 234, 413, 454, 459
SsiI CCGC 8 cut(s) 83, 163, 208, 246, 249, 269, 294, 345
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 2 cut(s) 95, 399
TasI AATT 6 cut(s) 78, 197, 234, 413, 454, 459
TatI WGTACW 1 cut(s) 363
TauI GCSGC 1 cut(s) 251
TscAI CASTG 2 cut(s) 124, 429
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 1 cut(s) 496
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 1 cut(s) 380
TspRI CASTG 2 cut(s) 124, 429
Van91I CCANNNNNTGG 1 cut(s) 304
XapI RAATTY 1 cut(s) 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XspI CTAG 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.