Rh3BG304900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0020680
Physical Location & Seq
Reverse (-)
30774708 .. 30775756
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG304900.1

Sequence Viewer

Length: 594 bp
ATGTATACTATTATTATTCGGTGTATAGATGATATTGTCTATTTGCTCTCATCCCCAAACCCTAAGCACAGCCGCCGGGGCTTTCTGCACGATCACTTTCTTCGTCCGGTGGTGGCTCTAGGCTGGCCTTTGGGCCTCGCCGACGCCTCTGCCGGACGGGGATTGCACTATACGATCAAACTCTGTGCGGGGGTTGCTCAAAAGTTTTTGCAGGTGGGTTCTGATTTCGGTTTCTGGTCTGCATCTCGGTTTCTGGTGGCTTTGCGTCTGCGGGTTTTGGTGGATCTCGGTTCGGGCTTCTTCGACGGACGATGGTTGCAGGGATTGAGATTCAGGATCTGCAGCGGCGTGGGTCGGCGGGGTACTGGATTGAGGTGGCTTCGGTGTGAGGAAGGTGGAGGCGACATGTTCTGCGGTGGGTCTGTTCTGTGGCGGCGGGGATCACAGCGGAGCGGCCTCATGCAAAGCTTCACTGGAACTGCGTGCAGGGTTTCAGGAGCGGAGATGGCTGCGGGACTGGAGTCAAGCCTGGTCGGCTGGGCCTTTGAGTGGGCTTTCCGTTGGAGTTCTTGGATCTTGGCTATTTTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.78

Weight (kDa)

10.07

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020680)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023543
rosa_samantha Rh1AG078900 Rh3BG304900 Rh3BG305000 Rh4AG058700 Rh7DG087000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AccBSI CCGCTC 2 cut(s) 453, 500
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 4 cut(s) 291, 344, 448, 581
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 1 cut(s) 549
AflIII ACRYGT 1 cut(s) 405
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 1 cut(s) 468
AluI AGCT 1 cut(s) 468
AlwI GGATC 4 cut(s) 291, 344, 448, 581
AlwNI CAGNNNCTG 1 cut(s) 339
AoxI GGCC 4 cut(s) 125, 133, 454, 540
ApeKI GCWGC 2 cut(s) 342, 509
AspS9I GGNCC 2 cut(s) 133, 540
AsuC2I CCSGG 1 cut(s) 77
BbvI GCAGC 2 cut(s) 354, 496
BccI CCATC 2 cut(s) 306, 499
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 1 cut(s) 530
BcnI CCSGG 1 cut(s) 77
BfaI CTAG 2 cut(s) 119, 592
BfmI CTRYAG 1 cut(s) 340
BfuAI ACCTGC 1 cut(s) 202
BglI GCCNNNNNGGC 2 cut(s) 78, 534
BisI GCNGC 6 cut(s) 73, 343, 346, 434, 454, 510
BlsI GCNGC 6 cut(s) 74, 344, 347, 435, 455, 511
Bme1390I CCNGG 2 cut(s) 77, 530
BmgT120I GGNCC 2 cut(s) 133, 540
BmrFI CCNGG 2 cut(s) 77, 530
BmsI GCATC 1 cut(s) 251
BoxI GACNNNNGTC 1 cut(s) 520
BpmI CTGGAG 1 cut(s) 539
Bpu10I CCTNAGC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse1I ACTGG 3 cut(s) 370, 478, 522
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 549
BseNI ACTGG 3 cut(s) 370, 478, 522
BseXI GCAGC 2 cut(s) 354, 496
BseYI CCCAGC 1 cut(s) 537
BsgI GTGCAG 2 cut(s) 71, 505
BshFI GGCC 4 cut(s) 127, 135, 456, 542
BsiSI CCGG 3 cut(s) 76, 107, 153
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 4 cut(s) 127, 135, 456, 542
Bsp143I GATC 6 cut(s) 91, 174, 283, 336, 440, 573
BspANI GGCC 4 cut(s) 127, 135, 456, 542
BspMAI CTGCAG 1 cut(s) 344
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 4 cut(s) 291, 344, 448, 581
BsrBI CCGCTC 2 cut(s) 453, 500
BsrI ACTGG 3 cut(s) 370, 478, 522
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 6 cut(s) 91, 174, 283, 336, 440, 573
BssNAI GTATAC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 144
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 530
BstACI GRCGYC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 125, 484
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 6 cut(s) 94, 177, 286, 339, 443, 576
BstMBI GATC 6 cut(s) 91, 174, 283, 336, 440, 573
BstMWI GCNNNNNNNGC 4 cut(s) 78, 194, 506, 534
BstNI CCWGG 1 cut(s) 530
BstNSI RCATGY 1 cut(s) 409
BstPAI GACNNNNGTC 1 cut(s) 520
BstSCI CCNGG 2 cut(s) 75, 528
BstSFI CTRYAG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 354, 496
BstX2I RGATCY 3 cut(s) 283, 336, 573
BstYI RGATCY 3 cut(s) 283, 336, 573
BstZ17I GTATAC 1 cut(s) 6
BsuRI GGCC 4 cut(s) 127, 135, 456, 542
BtsCI GGATG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 471
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 125, 484
CaiI CAGNNNCTG 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 133, 540
CseI GACGC 2 cut(s) 152, 254
Csp6I GTAC 1 cut(s) 363
CviAII CATG 2 cut(s) 406, 460
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 63
DpnI GATC 6 cut(s) 93, 176, 285, 338, 442, 575
DpnII GATC 6 cut(s) 91, 174, 283, 336, 440, 573
EcoRII CCWGG 1 cut(s) 528
FaeI CATG 2 cut(s) 409, 463
FaiI YATR 5 cut(s) 6, 26, 171, 407, 461
FaqI GGGAC 1 cut(s) 528
FatI CATG 2 cut(s) 405, 459
FauI CCCGC 5 cut(s) 181, 264, 351, 429, 505
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 6 cut(s) 73, 343, 346, 434, 454, 510
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 6 cut(s) 73, 343, 346, 434, 454, 510
FspBI CTAG 2 cut(s) 119, 592
GluI GCNGC 6 cut(s) 73, 343, 346, 434, 454, 510
GsaI CCCAGC 1 cut(s) 541
GsuI CTGGAG 1 cut(s) 539
HaeIII GGCC 4 cut(s) 127, 135, 456, 542
HapII CCGG 3 cut(s) 76, 107, 153
HgaI GACGC 2 cut(s) 152, 254
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 2 cut(s) 409, 463
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 2 cut(s) 330, 521
HpaII CCGG 3 cut(s) 76, 107, 153
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 2 cut(s) 334, 495
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 146, 308
HpyAV CCTTC 1 cut(s) 386
HpyCH4V TGCA 8 cut(s) 88, 166, 211, 242, 319, 342, 463, 486
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 194, 506, 534
HpyF3I CTNAG 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 409, 463
Kzo9I GATC 6 cut(s) 91, 174, 283, 336, 440, 573
LmnI GCTCC 2 cut(s) 450, 497
Lsp1109I GCAGC 2 cut(s) 354, 496
LweI GCATC 1 cut(s) 251
MaeI CTAG 2 cut(s) 119, 592
MalI GATC 6 cut(s) 93, 176, 285, 338, 442, 575
MbiI CCGCTC 2 cut(s) 453, 500
MboI GATC 6 cut(s) 91, 174, 283, 336, 440, 573
MboII GAAGA 2 cut(s) 92, 292
MflI RGATCY 3 cut(s) 283, 336, 573
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 6 cut(s) 146, 157, 366, 382, 392, 467
MspA1I CMGCKG 2 cut(s) 345, 448
MspI CCGG 3 cut(s) 76, 107, 153
MspR9I CCNGG 2 cut(s) 77, 530
MvaI CCWGG 1 cut(s) 530
MwoI GCNNNNNNNGC 4 cut(s) 78, 194, 506, 534
NciI CCSGG 1 cut(s) 77
NdeII GATC 6 cut(s) 91, 174, 283, 336, 440, 573
NlaIII CATG 2 cut(s) 409, 463
NspI RCATGY 1 cut(s) 409
PaqCI CACCTGC 1 cut(s) 202
PciI ACATGT 1 cut(s) 405
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 6 cut(s) 74, 344, 347, 435, 455, 511
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
PscI ACATGT 1 cut(s) 405
PshAI GACNNNNGTC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 528
PspFI CCCAGC 1 cut(s) 537
PspGI CCWGG 1 cut(s) 528
PspPI GGNCC 2 cut(s) 133, 540
PstI CTGCAG 1 cut(s) 344
PstNI CAGNNNCTG 1 cut(s) 339
PsuI RGATCY 3 cut(s) 283, 336, 573
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SatI GCNGC 6 cut(s) 73, 343, 346, 434, 454, 510
Sau3AI GATC 6 cut(s) 91, 174, 283, 336, 440, 573
Sau96I GGNCC 2 cut(s) 133, 540
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 2 cut(s) 77, 530
SetI ASST 4 cut(s) 216, 377, 397, 470
SfaNI GCATC 1 cut(s) 251
SfcI CTRYAG 1 cut(s) 340
SspMI CTAG 2 cut(s) 119, 592
StyD4I CCNGG 2 cut(s) 75, 528
TaqI TCGA 1 cut(s) 303
TauI GCSGC 4 cut(s) 75, 348, 436, 456
TfiI GAWTC 1 cut(s) 330
TscAI CASTG 1 cut(s) 478
TseI GCWGC 2 cut(s) 342, 509
TspGWI ACGGA 2 cut(s) 321, 548
TspRI CASTG 1 cut(s) 478
XceI RCATGY 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 119, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.