Rh1AG131400

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0026174
Physical Location & Seq
Forward (+)
24762460 .. 24763209
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG131400.1

Sequence Viewer

Length: 633 bp
ATGTGTGGTGACCATGATGATCATCGCCTTGCTATCCATGTCCCGGTCAAGCGCCTTTCTCCTTGTCACAGACTTCAGCATCTTGGATGCGGTCAGCAGAGCGACAAGACGGTTAGTGAGCAGAAACAAATGCTAGTAAAATTGTTTGTGAAACACATAGATTATAAGCACCAGAAAATTCAAGTTCATGTCCCAGATGATTGCTTTCTCCTAATGCAATTAGAATACCAAAACGTGAAGCCAATCTCTCCTTTCACCGTCTCAGATTTTGGTAAGGGTAATCATGAGAAATTTGAAAATTTCAGCTTATTCAACTGTCCCACCCCAAGCACAGATATTTATCCACCAACACAAGTTCCCTGCATCAATAGCCTGGGCTACAAATATATATATGCTGTTCCTTCCTCGTCCCAACCGCTACAAAGATGTACAAAGATGTATGATTTACTAGTTCCATATGAAACACTGTTTCCCGATGACTATATTTGGTCGTGGTCTACACCAAACTGTACAGAATGTGAAGCTAAGGGTAGGAAGTGTCATTTGAAGATCAACGGCACCAAAAGTGAAATTGAATGTGTTCATCTTAGCAAACCAAGTAAGCATCGATGGCATAAATCTTTTGTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

210

Amino Acids

24.32

Weight (kDa)

8.43

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026174)

Species Orthologous Gene IDs
rosa_samantha Rh1AG131400 Rh1DG136900 Rh3CG251600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 557
AccI GTMKAC 1 cut(s) 497
AciI CCGC 2 cut(s) 90, 416
AcsI RAATTY 3 cut(s) 177, 290, 298
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 2 cut(s) 430, 511
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 5 cut(s) 182, 296, 313, 547, 575
AhlI ACTAGT 1 cut(s) 448
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 2 cut(s) 306, 524
AluI AGCT 2 cut(s) 306, 524
Alw26I GTCTC 1 cut(s) 265
ApoI RAATTY 3 cut(s) 177, 290, 298
Asp700I GAANNNNTTC 1 cut(s) 579
AspLEI GCGC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 20, 247
BanI GGYRCC 1 cut(s) 557
BccI CCATC 1 cut(s) 603
BceAI ACGGC 1 cut(s) 571
BciT130I CCWGG 1 cut(s) 374
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 265
BcuI ACTAGT 1 cut(s) 448
BfaI CTAG 2 cut(s) 134, 449
BfoI RGCGCY 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 44, 374
BmiI GGNNCC 1 cut(s) 559
BmrFI CCNGG 2 cut(s) 44, 374
BmsI GCATC 4 cut(s) 77, 88, 372, 613
Bpu10I CCTNAGC 1 cut(s) 525
BpuMI CCSGG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 607
BsaBI GATNNNNATC 2 cut(s) 21, 339
BsaJI CCNNGG 1 cut(s) 373
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse8I GATNNNNATC 2 cut(s) 21, 339
BseBI CCWGG 1 cut(s) 374
BseCI ATCGAT 1 cut(s) 607
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 1 cut(s) 92
BseJI GATNNNNATC 2 cut(s) 21, 339
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 557
BshVI ATCGAT 1 cut(s) 607
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 4 cut(s) 26, 176, 303, 394
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 265
BsmBI CGTCTC 1 cut(s) 265
BsmFI GGGAC 4 cut(s) 26, 176, 303, 394
Bsp1407I TGTACA 2 cut(s) 428, 509
Bsp143I GATC 2 cut(s) 19, 549
BspACI CCGC 2 cut(s) 90, 416
BspCNI CTCAG 1 cut(s) 275
BspDI ATCGAT 1 cut(s) 607
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 559
BspT107I GGYRCC 1 cut(s) 557
BsrGI TGTACA 2 cut(s) 428, 509
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 2 cut(s) 19, 549
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 5 cut(s) 112, 259, 317, 468, 509
BstAUI TGTACA 2 cut(s) 428, 509
BstDEI CTNAG 3 cut(s) 262, 525, 587
BstEII GGTNACC 1 cut(s) 8
BstF5I GGATG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 2 cut(s) 22, 552
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 2 cut(s) 19, 549
BstMWI GCNNNNNNNGC 2 cut(s) 369, 610
BstNI CCWGG 1 cut(s) 374
BstPI GGTNACC 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 42, 372
Bsu15I ATCGAT 1 cut(s) 607
BsuTUI ATCGAT 1 cut(s) 607
BtgZI GCGATG 1 cut(s) 8
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 464
CciI TCATGA 1 cut(s) 283
CfoI GCGC 1 cut(s) 54
ClaI ATCGAT 1 cut(s) 607
Csp6I GTAC 2 cut(s) 429, 510
CviAII CATG 4 cut(s) 14, 38, 188, 284
CviJI RGCY 5 cut(s) 241, 306, 372, 378, 524
CviKI_1 RGCY 5 cut(s) 241, 306, 372, 378, 524
CviQI GTAC 2 cut(s) 429, 510
DdeI CTNAG 3 cut(s) 262, 525, 587
DpnI GATC 2 cut(s) 21, 551
DpnII GATC 2 cut(s) 19, 549
Eco57I CTGAAG 1 cut(s) 59
Eco91I GGTNACC 1 cut(s) 8
EcoO65I GGTNACC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 265
FaeI CATG 4 cut(s) 17, 41, 191, 287
FaqI GGGAC 4 cut(s) 26, 176, 303, 394
FatI CATG 4 cut(s) 13, 37, 187, 283
FauNDI CATATG 1 cut(s) 457
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 1 cut(s) 497
FokI GGATG 1 cut(s) 99
FspBI CTAG 2 cut(s) 134, 449
GlaI GCGC 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 55
HapII CCGG 1 cut(s) 44
HhaI GCGC 1 cut(s) 54
Hin1II CATG 4 cut(s) 17, 41, 191, 287
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 20, 247
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 2 cut(s) 284, 473
Hpy8I GTNNAC 1 cut(s) 498
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 5 cut(s) 112, 259, 317, 468, 509
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 217, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 369, 610
HpyF3I CTNAG 3 cut(s) 262, 525, 587
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 4 cut(s) 17, 41, 191, 287
HspAI GCGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 2 cut(s) 19, 549
LpnPI CCDG 6 cut(s) 57, 185, 207, 359, 373, 386
LweI GCATC 4 cut(s) 77, 88, 372, 613
MaeI CTAG 2 cut(s) 134, 449
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 3 cut(s) 8, 65, 625
MalI GATC 2 cut(s) 21, 551
MboI GATC 2 cut(s) 19, 549
MboII GAAGA 1 cut(s) 559
MluCI AATT 6 cut(s) 140, 177, 218, 290, 298, 570
MnlI CCTC 1 cut(s) 415
MroXI GAANNNNTTC 1 cut(s) 579
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 44, 374
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 369, 610
NciI CCSGG 1 cut(s) 44
NdeI CATATG 1 cut(s) 457
NdeII GATC 2 cut(s) 19, 549
NlaIII CATG 4 cut(s) 17, 41, 191, 287
NlaIV GGNNCC 1 cut(s) 559
NmuCI GTSAC 3 cut(s) 8, 65, 625
PagI TCATGA 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 579
PsiI TTATAA 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 372
PspEI GGTNACC 1 cut(s) 8
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 559
RsaI GTAC 2 cut(s) 430, 511
RsaNI GTAC 2 cut(s) 429, 510
Sau3AI GATC 2 cut(s) 19, 549
ScrFI CCNGG 2 cut(s) 44, 374
SetI ASST 3 cut(s) 237, 308, 526
SfaNI GCATC 4 cut(s) 77, 88, 372, 613
SpeI ACTAGT 1 cut(s) 448
Sse9I AATT 6 cut(s) 140, 177, 218, 290, 298, 570
SsiI CCGC 2 cut(s) 90, 416
SspMI CTAG 2 cut(s) 134, 449
StyD4I CCNGG 2 cut(s) 42, 372
TaaI ACNGT 5 cut(s) 112, 259, 317, 468, 509
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 607
TasI AATT 6 cut(s) 140, 177, 218, 290, 298, 570
TatI WGTACW 2 cut(s) 428, 509
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 3 cut(s) 8, 65, 625
Tsp45I GTSAC 3 cut(s) 8, 65, 625
TspDTI ATGAA 3 cut(s) 176, 474, 572
TspRI CASTG 1 cut(s) 471
XapI RAATTY 3 cut(s) 177, 290, 298
XmiI GTMKAC 1 cut(s) 497
XmnI GAANNNNTTC 1 cut(s) 579
XspI CTAG 2 cut(s) 134, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.