Rh3CG251600

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0026174
Physical Location & Seq
Reverse (-)
24478033 .. 24478680
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG251600.1

Sequence Viewer

Length: 648 bp
ATGGCTTTCTTCAAGGTGTGCCATAATGCATGCACAGAATCCAAGTGTGGTGACCATGATGATCATCGCCCTGCTATTCATGTCCCGGTCAAGCGCGTCCGTTGTGATAATCATCAGCAGCAGAGCGACAAGACAATTGTTGTGCAGAAGCAGATGGTGGTAAAATTCTTTGTGAAACACATAGATTATAAGCACCAGAAAATTCGAGTACTTCCAGATGATTGCTTTCTCCTAAGGCAATTAGAAACCCCAAGCATGAAGCCAATGTTCTCTCCTTTGAACTTCTCAGAATATGATACGGAGTGCATCAGCTTATTCAACTGTCCCACAGCTAATTATCCGCACATGCAAGTCCCCTGCCTCAGTGACCTGGTATACAAAAATATATATGCCGTTTCTTCGGAGGTTCAAGCCCCACAATACTGTACAAAGATGTATGATTTGATAAATCCATATGGACTTCATTTCAGAAAAATAAGTGATCCATACGGATTTATGCATGAATCGAATCCAGATAACTATCTCTGGTGGTCTACACCAAATTGTACAGAATGTGAAGCGAAGCGTAAGAAGTGTCAATTGAAGATCAACGGCACCAAAAGTGAAATTGAATGTGTTCAGTTTAGCAAACCAAGTAAGGGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

215

Amino Acids

25.04

Weight (kDa)

8.36

Isoelectric Point (pI)

62.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026174)

Species Orthologous Gene IDs
rosa_samantha Rh1AG131400 Rh1DG136900 Rh3CG251600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 593
AccI GTMKAC 2 cut(s) 375, 533
AccII CGCG 1 cut(s) 96
AciI CCGC 1 cut(s) 341
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 2 cut(s) 164, 201
AfaI GTAC 3 cut(s) 210, 427, 547
AfiI CCNNNNNNNGG 1 cut(s) 638
AgsI TTSAA 6 cut(s) 13, 280, 319, 410, 583, 611
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 2 cut(s) 312, 332
AluI AGCT 2 cut(s) 312, 332
AlwI GGATC 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 2 cut(s) 164, 201
Asp700I GAANNNNTTC 1 cut(s) 615
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 641
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 1 cut(s) 641
AxyI CCTNAGG 1 cut(s) 233
BanI GGYRCC 1 cut(s) 593
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 148
BceAI ACGGC 2 cut(s) 377, 607
BciT130I CCWGG 1 cut(s) 371
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 86
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmcAI AGTACT 1 cut(s) 210
Bme1390I CCNGG 2 cut(s) 86, 371
Bme18I GGWCC 1 cut(s) 641
BmgT120I GGNCC 1 cut(s) 641
BmiI GGNNCC 2 cut(s) 595, 642
BmrFI CCNGG 2 cut(s) 86, 371
BmsI GCATC 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 86
BsaBI GATNNNNATC 3 cut(s) 63, 111, 519
Bsc4I CCNNNNNNNGG 1 cut(s) 638
Bse21I CCTNAGG 1 cut(s) 233
Bse8I GATNNNNATC 3 cut(s) 63, 111, 519
BseBI CCWGG 1 cut(s) 371
BseJI GATNNNNATC 3 cut(s) 63, 111, 519
BseLI CCNNNNNNNGG 1 cut(s) 638
BseMII CTCAG 2 cut(s) 300, 376
BseXI GCAGC 1 cut(s) 130
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 593
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 3 cut(s) 68, 309, 338
BslI CCNNNNNNNGG 1 cut(s) 638
BsmFI GGGAC 3 cut(s) 68, 309, 338
Bsp1407I TGTACA 2 cut(s) 425, 545
Bsp143I GATC 3 cut(s) 61, 481, 585
BspACI CCGC 1 cut(s) 341
BspCNI CTCAG 2 cut(s) 299, 375
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 595, 642
BspPI GGATC 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 593
BsrGI TGTACA 2 cut(s) 425, 545
BssMI GATC 3 cut(s) 61, 481, 585
BssNAI GTATAC 1 cut(s) 376
Bst1107I GTATAC 1 cut(s) 376
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 2 cut(s) 323, 425
BstAUI TGTACA 2 cut(s) 425, 545
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 3 cut(s) 233, 286, 362
BstEII GGTNACC 1 cut(s) 50
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 3 cut(s) 64, 484, 588
BstMBI GATC 3 cut(s) 61, 481, 585
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 2 cut(s) 33, 349
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 84, 369
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 130
BstZ17I GTATAC 1 cut(s) 376
Bsu36I CCTNAGG 1 cut(s) 233
BtgZI GCGATG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 641
CseI GACGC 1 cut(s) 85
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 3 cut(s) 209, 426, 546
CviAII CATG 6 cut(s) 30, 56, 80, 256, 346, 500
CviJI RGCY 5 cut(s) 5, 262, 312, 332, 413
CviKI_1 RGCY 5 cut(s) 5, 262, 312, 332, 413
CviQI GTAC 3 cut(s) 209, 426, 546
DdeI CTNAG 3 cut(s) 233, 286, 362
DpnI GATC 3 cut(s) 63, 483, 587
DpnII GATC 3 cut(s) 61, 481, 585
Eco47I GGWCC 1 cut(s) 641
Eco81I CCTNAGG 1 cut(s) 233
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 369
EcoT22I ATGCAT 2 cut(s) 31, 501
FaeI CATG 6 cut(s) 33, 59, 83, 259, 349, 503
FaqI GGGAC 3 cut(s) 68, 309, 338
FatI CATG 6 cut(s) 29, 55, 79, 255, 345, 499
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 61
FblI GTMKAC 2 cut(s) 375, 533
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
GlaI GCGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 119
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 85
HhaI GCGC 1 cut(s) 96
Hin1II CATG 6 cut(s) 33, 59, 83, 259, 349, 503
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 3 cut(s) 38, 503, 508
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 376, 534
Hpy188I TCNGA 3 cut(s) 289, 403, 470
Hpy188III TCNNGA 2 cut(s) 215, 512
Hpy8I GTNNAC 2 cut(s) 376, 534
HpyCH4III ACNGT 2 cut(s) 323, 425
HpyCH4V TGCA 6 cut(s) 29, 33, 145, 306, 349, 499
HpyF3I CTNAG 3 cut(s) 233, 286, 362
Hsp92II CATG 6 cut(s) 33, 59, 83, 259, 349, 503
HspAI GCGC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 61, 481, 585
LpnPI CCDG 9 cut(s) 84, 99, 209, 228, 356, 370, 383, 511, 525
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 315
MabI ACCWGGT 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 50, 365
MalI GATC 3 cut(s) 63, 483, 587
MboI GATC 3 cut(s) 61, 481, 585
MboII GAAGA 2 cut(s) 390, 595
MfeI CAATTG 2 cut(s) 135, 578
MluCI AATT 8 cut(s) 135, 164, 201, 239, 334, 541, 578, 606
MnlI CCTC 2 cut(s) 371, 397
Mph1103I ATGCAT 2 cut(s) 31, 501
MroXI GAANNNNTTC 1 cut(s) 615
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 86, 371
MunI CAATTG 2 cut(s) 135, 578
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 1 cut(s) 96
NciI CCSGG 1 cut(s) 86
NdeI CATATG 1 cut(s) 454
NdeII GATC 3 cut(s) 61, 481, 585
NlaIII CATG 6 cut(s) 33, 59, 83, 259, 349, 503
NlaIV GGNNCC 2 cut(s) 595, 642
NmuCI GTSAC 2 cut(s) 50, 365
NsiI ATGCAT 2 cut(s) 31, 501
NspI RCATGY 2 cut(s) 33, 349
PaeI GCATGC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 3 cut(s) 38, 503, 508
PkrI GCNGC 1 cut(s) 120
PsiI TTATAA 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 369
PspEI GGTNACC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 595, 642
PspPI GGNCC 1 cut(s) 641
RsaI GTAC 3 cut(s) 210, 427, 547
RsaNI GTAC 3 cut(s) 209, 426, 546
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 3 cut(s) 61, 481, 585
Sau96I GGNCC 1 cut(s) 641
ScaI AGTACT 1 cut(s) 210
ScrFI CCNGG 2 cut(s) 86, 371
SetI ASST 5 cut(s) 18, 314, 334, 372, 408
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 1 cut(s) 315
SinI GGWCC 1 cut(s) 641
SphI GCATGC 1 cut(s) 33
Sse9I AATT 8 cut(s) 135, 164, 201, 239, 334, 541, 578, 606
SsiI CCGC 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 84, 369
TaaI ACNGT 2 cut(s) 323, 425
TaqI TCGA 2 cut(s) 205, 506
TasI AATT 8 cut(s) 135, 164, 201, 239, 334, 541, 578, 606
TatI WGTACW 3 cut(s) 208, 425, 545
TfiI GAWTC 3 cut(s) 38, 503, 508
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 2 cut(s) 50, 365
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 2 cut(s) 50, 365
TspDTI ATGAA 4 cut(s) 68, 272, 452, 516
TspGWI ACGGA 3 cut(s) 89, 314, 504
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 641
XapI RAATTY 2 cut(s) 164, 201
XceI RCATGY 2 cut(s) 33, 349
XmiI GTMKAC 2 cut(s) 375, 533
XmnI GAANNNNTTC 1 cut(s) 615
ZrmI AGTACT 1 cut(s) 210
Zsp2I ATGCAT 2 cut(s) 31, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.