Rh1DG136900

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0026174
Physical Location & Seq
Forward (+)
28746951 .. 28779246
32296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG136900.1

Sequence Viewer

Length: 1251 bp
ATGCAGCAGCTAATCCTCATCTCATCTTTTTGCATATTAATTTCAATGGCTTTCTTCAAAGTGTGCCATAATGCATGCACAGAATCAATGTGTGGTGACCATGATGATCATCGCCTTGCTATCCATGTCCCGGTCAAGCGCCTTTCTCCTTGTCACAGACTTCAGCATCTTGGATGCGGTCAGCAGAGCGACAAGACGGTTAGTGAGCAGAAACAAATGCTAGTAAAATTCTTTGTGAAACACATAGATTATAAGCACCAGAAAATTCAAGTTCATGTCCCAGATGATTGCTTTCTCCTAATGCAATTAGAATACCAAAACGTGAAGCCAATCTCTCCTTTCACCGTCTCAGATTTTGGTAAGGGTAATCATGAGAAATTTCAAAATGTCAGCTTATTCAACTGTCCCACTCTCACCCCAATCACAGATATTGTTCCACCAAGACAAGTTCCCTGCATCAATAGCCTGGGCTACAAATATATATATGCTGTTTATTCCCTGTTCGAACCGCTACAAAGATGTACAAAGATGTATGATTTACTAGTTCCATATGGAATACTGTTTCCCGATCACTGTATTTGGTCGTGGTCTACACCAAACTGTACAGAATGTGAAGCTAAGGGTAGGAAGTGTCATTTGAAGATCAACGGCACCAAAAGTGAAATTGAATGTGTTCATCTTAGCAAACCAAACCGGACTGATTGGTTTTGCTCTCTTGTTGGTGGCGGCAGAATTTATCGGACATGGCCTTTGAGGGAGCACCTGTTTGAGGACCTGCGATGGGATGCTCAACGTGTCCGAGAGGTTGAGATAGAAAAGGTTAAGAAGAGAAGGGAGGAAAGAGCACTTGAAAAAGCTCAACATGCGGAAGAAATGGCGCTACTTGCCAGAGAACGCGCTCGGGCTGAGTTCCAAGACTGGGAGAAAAAAGAAGAAGAGAGAGAGTTGCAACAGGCTTATACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAGGAGGAAAATGAAAGGCTAAGGAAGCAAAAGGTTGGGTGTTTATCGGACATGGCCATTGAGGCAGCACCTGTTTTGAGGACTTGTGATGGGATGCTTGGCGTGTTCGAGAGGTTGCGGTCTTTGAAGAACTGGTTCTGGATTTTGGTTTTGACGATGGTGATGGAGCCCATTATGACTGCAGGGTTGCCAGACGCAGTGTTGTTGACATGTTTGTCACCTATGTCACTCGTATTCCCCTATCGGAATTGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

416

Amino Acids

48.6

Weight (kDa)

7.8

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026174)

Species Orthologous Gene IDs
rosa_samantha Rh1AG131400 Rh1DG136900 Rh3CG251600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 252
AasI GACNNNNNNGTC 1 cut(s) 1207
Acc36I ACCTGC 1 cut(s) 783
AccB1I GGYRCC 1 cut(s) 650
AccI GTMKAC 1 cut(s) 590
AccII CGCG 1 cut(s) 897
AciI CCGC 5 cut(s) 177, 509, 726, 866, 1111
AcoI YGGCCR 1 cut(s) 1047
AcsI RAATTY 4 cut(s) 227, 264, 377, 732
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 2 cut(s) 523, 604
AfiI CCNNNNNNNGG 4 cut(s) 130, 769, 781, 919
AflIII ACRYGT 2 cut(s) 793, 1202
AgsI TTSAA 9 cut(s) 45, 58, 269, 383, 400, 640, 668, 851, 1120
AhlI ACTAGT 1 cut(s) 541
AjiI CACGTC 1 cut(s) 989
AjnI CCWGG 1 cut(s) 465
AluBI AGCT 4 cut(s) 10, 393, 617, 857
AluI AGCT 4 cut(s) 10, 393, 617, 857
Alw21I GWGCWC 2 cut(s) 762, 847
Alw26I GTCTC 1 cut(s) 352
AlwNI CAGNNNCTG 1 cut(s) 1064
Ama87I CYCGRG 1 cut(s) 900
AoxI GGCC 2 cut(s) 746, 1047
ApeKI GCWGC 3 cut(s) 4, 7, 1058
ApoI RAATTY 4 cut(s) 227, 264, 377, 732
ArsI GACNNNNNNTTYG 2 cut(s) 733, 765
AseI ATTAAT 1 cut(s) 38
Asp700I GAANNNNTTC 2 cut(s) 672, 1127
AspLEI GCGC 3 cut(s) 141, 880, 899
AspS9I GGNCC 1 cut(s) 772
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 5 cut(s) 107, 334, 406, 1165, 1203
AsuII TTCGAA 1 cut(s) 504
AvaI CYCGRG 1 cut(s) 900
AvaII GGWCC 1 cut(s) 772
BalI TGGCCA 1 cut(s) 1049
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 1 cut(s) 1164
Bbv12I GWGCWC 2 cut(s) 762, 847
BbvI GCAGC 3 cut(s) 16, 19, 1070
BccI CCATC 4 cut(s) 774, 1076, 1144, 1150
BceAI ACGGC 1 cut(s) 664
BciT130I CCWGG 1 cut(s) 467
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 352
BcuI ACTAGT 1 cut(s) 541
BfaI CTAG 2 cut(s) 221, 542
BfmI CTRYAG 1 cut(s) 1173
BfoI RGCGCY 2 cut(s) 142, 881
BfuAI ACCTGC 1 cut(s) 783
BglI GCCNNNNNGGC 1 cut(s) 1055
BisI GCNGC 4 cut(s) 5, 8, 727, 1059
BlsI GCNGC 4 cut(s) 6, 9, 728, 1060
Bme1390I CCNGG 2 cut(s) 131, 467
Bme18I GGWCC 1 cut(s) 772
BmeT110I CYCGRG 1 cut(s) 900
BmgBI CACGTC 1 cut(s) 989
BmgT120I GGNCC 1 cut(s) 772
BmiI GGNNCC 2 cut(s) 652, 1161
BmrFI CCNGG 2 cut(s) 131, 467
BmrI ACTGGG 1 cut(s) 928
BmsI GCATC 5 cut(s) 164, 175, 465, 775, 1077
BmuI ACTGGG 1 cut(s) 928
BpmI CTGGAG 2 cut(s) 992, 1013
Bpu10I CCTNAGC 2 cut(s) 618, 1013
Bpu14I TTCGAA 1 cut(s) 504
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 466
BsaWI WCCGGW 1 cut(s) 693
BsaXI ACNNNNNCTCC 2 cut(s) 749, 779
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 769, 781, 919
Bse1I ACTGG 3 cut(s) 923, 975, 1130
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 3 cut(s) 179, 790, 1092
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 4 cut(s) 130, 769, 781, 919
BseMII CTCAG 2 cut(s) 363, 897
BseNI ACTGG 3 cut(s) 923, 975, 1130
BseRI GAGGAG 1 cut(s) 1010
BseXI GCAGC 3 cut(s) 16, 19, 1070
Bsh1236I CGCG 1 cut(s) 897
BshFI GGCC 2 cut(s) 748, 1049
BshNI GGYRCC 1 cut(s) 650
BsiHKAI GWGCWC 2 cut(s) 762, 847
BsiHKCI CYCGRG 1 cut(s) 900
BsiSI CCGG 2 cut(s) 131, 694
BslFI GGGAC 3 cut(s) 113, 263, 390
BslI CCNNNNNNNGG 4 cut(s) 130, 769, 781, 919
BsmAI GTCTC 1 cut(s) 352
BsmBI CGTCTC 1 cut(s) 352
BsmFI GGGAC 3 cut(s) 113, 263, 390
BsnI GGCC 2 cut(s) 748, 1049
BsoBI CYCGRG 1 cut(s) 900
Bsp119I TTCGAA 1 cut(s) 504
Bsp1286I GDGCHC 3 cut(s) 762, 847, 1164
Bsp1407I TGTACA 2 cut(s) 521, 602
Bsp143I GATC 3 cut(s) 106, 568, 642
BspACI CCGC 5 cut(s) 177, 509, 726, 866, 1111
BspANI GGCC 2 cut(s) 748, 1049
BspCNI CTCAG 2 cut(s) 362, 898
BspFNI CGCG 1 cut(s) 897
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 652, 1161
BspMAI CTGCAG 1 cut(s) 1177
BspMI ACCTGC 1 cut(s) 783
BspT104I TTCGAA 1 cut(s) 504
BspT107I GGYRCC 1 cut(s) 650
BsrGI TGTACA 2 cut(s) 521, 602
BsrI ACTGG 3 cut(s) 923, 975, 1130
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 3 cut(s) 106, 568, 642
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 6 cut(s) 199, 346, 404, 561, 575, 602
Bst6I CTCTTC 2 cut(s) 821, 930
BstAUI TGTACA 2 cut(s) 521, 602
BstBI TTCGAA 1 cut(s) 504
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 5 cut(s) 349, 618, 680, 906, 1013
BstEII GGTNACC 1 cut(s) 95
BstENI CCTNNNNNAGG 1 cut(s) 767
BstF5I GGATG 3 cut(s) 179, 790, 1092
BstFNI CGCG 1 cut(s) 897
BstH2I RGCGCY 2 cut(s) 142, 881
BstHHI GCGC 3 cut(s) 141, 880, 899
BstKTI GATC 3 cut(s) 109, 571, 645
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 3 cut(s) 106, 568, 642
BstMWI GCNNNNNNNGC 5 cut(s) 462, 863, 884, 1018, 1055
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 3 cut(s) 78, 866, 1206
BstPI GGTNACC 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 129, 465
BstSFI CTRYAG 1 cut(s) 1173
BstUI CGCG 1 cut(s) 897
BstV1I GCAGC 3 cut(s) 16, 19, 1070
BsuRI GGCC 2 cut(s) 748, 1049
BtgZI GCGATG 2 cut(s) 95, 793
BtrI CACGTC 1 cut(s) 989
BtsCI GGATG 3 cut(s) 179, 790, 1092
BtsI GCAGTG 1 cut(s) 1197
BtsIMutI CAGTG 2 cut(s) 571, 1197
BveI ACCTGC 1 cut(s) 783
Cac8I GCNNGC 1 cut(s) 76
CaiI CAGNNNCTG 1 cut(s) 1064
CciI TCATGA 1 cut(s) 370
CfoI GCGC 3 cut(s) 141, 880, 899
Cfr13I GGNCC 1 cut(s) 772
CseI GACGC 1 cut(s) 1196
Csp6I GTAC 2 cut(s) 522, 603
CviAII CATG 9 cut(s) 75, 101, 125, 275, 371, 744, 863, 1045, 1203
CviQI GTAC 2 cut(s) 522, 603
DdeI CTNAG 5 cut(s) 349, 618, 680, 906, 1013
DpnI GATC 3 cut(s) 108, 570, 644
DpnII GATC 3 cut(s) 106, 568, 642
DrdI GACNNNNNNGTC 1 cut(s) 1207
DseDI GACNNNNNNGTC 1 cut(s) 1207
EaeI YGGCCR 1 cut(s) 1047
Eam1104I CTCTTC 2 cut(s) 821, 930
EarI CTCTTC 2 cut(s) 821, 930
Eco24I GRGCYC 1 cut(s) 1164
Eco47I GGWCC 1 cut(s) 772
Eco57I CTGAAG 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 900
Eco91I GGTNACC 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 767
EcoO109I RGGNCCY 1 cut(s) 772
EcoO65I GGTNACC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 1164
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 9 cut(s) 78, 104, 128, 278, 374, 747, 866, 1048, 1206
FaqI GGGAC 3 cut(s) 113, 263, 390
FatI CATG 9 cut(s) 74, 100, 124, 274, 370, 743, 862, 1044, 1202
FauNDI CATATG 1 cut(s) 550
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 4 cut(s) 5, 8, 727, 1059
FokI GGATG 3 cut(s) 186, 797, 1099
FriOI GRGCYC 1 cut(s) 1164
Fsp4HI GCNGC 4 cut(s) 5, 8, 727, 1059
FspBI CTAG 2 cut(s) 221, 542
GlaI GCGC 3 cut(s) 140, 879, 898
GluI GCNGC 4 cut(s) 5, 8, 727, 1059
GsuI CTGGAG 2 cut(s) 992, 1013
HaeII RGCGCY 2 cut(s) 142, 881
HaeIII GGCC 2 cut(s) 748, 1049
HapII CCGG 2 cut(s) 131, 694
HgaI GACGC 1 cut(s) 1196
HhaI GCGC 3 cut(s) 141, 880, 899
Hin1II CATG 9 cut(s) 78, 104, 128, 278, 374, 747, 866, 1048, 1206
Hin6I GCGC 3 cut(s) 139, 878, 897
HinP1I GCGC 3 cut(s) 139, 878, 897
HincII GTYRAC 1 cut(s) 1200
HindII GTYRAC 1 cut(s) 1200
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 131, 694
HphI GGTGA 5 cut(s) 107, 334, 406, 1165, 1203
Hpy166II GTNNAC 2 cut(s) 591, 1200
Hpy188I TCNGA 5 cut(s) 352, 741, 800, 1042, 1239
Hpy188III TCNNGA 5 cut(s) 371, 566, 992, 1102, 1132
Hpy8I GTNNAC 2 cut(s) 591, 1200
HpyAV CCTTC 1 cut(s) 825
HpyCH4III ACNGT 6 cut(s) 199, 346, 404, 561, 575, 602
HpyCH4IV ACGT 3 cut(s) 321, 793, 988
HpyCH4V TGCA 8 cut(s) 4, 33, 74, 78, 304, 456, 949, 1175
HpyF10VI GCNNNNNNNGC 5 cut(s) 462, 863, 884, 1018, 1055
HpyF3I CTNAG 5 cut(s) 349, 618, 680, 906, 1013
HpySE526I ACGT 3 cut(s) 321, 793, 988
Hsp92II CATG 9 cut(s) 78, 104, 128, 278, 374, 747, 866, 1048, 1206
HspAI GCGC 3 cut(s) 139, 878, 897
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 3 cut(s) 106, 568, 642
LmnI GCTCC 2 cut(s) 757, 1159
Lsp1109I GCAGC 3 cut(s) 16, 19, 1070
LweI GCATC 5 cut(s) 164, 175, 465, 775, 1077
MaeI CTAG 2 cut(s) 221, 542
MaeII ACGT 3 cut(s) 321, 793, 988
MaeIII GTNAC 4 cut(s) 95, 152, 1209, 1218
MalI GATC 3 cut(s) 108, 570, 644
MboI GATC 3 cut(s) 106, 568, 642
MboII GAAGA 7 cut(s) 46, 652, 838, 881, 944, 947, 1132
MhlI GDGCHC 3 cut(s) 762, 847, 1164
MlsI TGGCCA 1 cut(s) 1049
MluCI AATT 9 cut(s) 39, 227, 264, 305, 377, 663, 732, 1240, 1246
MluNI TGGCCA 1 cut(s) 1049
Mox20I TGGCCA 1 cut(s) 1049
Mph1103I ATGCAT 1 cut(s) 76
MroXI GAANNNNTTC 2 cut(s) 672, 1127
MscI TGGCCA 1 cut(s) 1049
MseI TTAA 3 cut(s) 38, 822, 1249
Msp20I TGGCCA 1 cut(s) 1049
MspI CCGG 2 cut(s) 131, 694
MspR9I CCNGG 2 cut(s) 131, 467
MvaI CCWGG 1 cut(s) 467
MvnI CGCG 1 cut(s) 897
MwoI GCNNNNNNNGC 5 cut(s) 462, 863, 884, 1018, 1055
NciI CCSGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 550
NdeII GATC 3 cut(s) 106, 568, 642
NlaIII CATG 9 cut(s) 78, 104, 128, 278, 374, 747, 866, 1048, 1206
NlaIV GGNNCC 2 cut(s) 652, 1161
NmuCI GTSAC 4 cut(s) 95, 152, 1209, 1218
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 3 cut(s) 78, 866, 1206
NspV TTCGAA 1 cut(s) 504
PaeI GCATGC 1 cut(s) 78
PagI TCATGA 1 cut(s) 370
PciI ACATGT 1 cut(s) 1202
PdmI GAANNNNTTC 2 cut(s) 672, 1127
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 4 cut(s) 6, 9, 728, 1060
PpuMI RGGWCCY 1 cut(s) 772
PscI ACATGT 1 cut(s) 1202
PshBI ATTAAT 1 cut(s) 38
PsiI TTATAA 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 1 cut(s) 465
PspEI GGTNACC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 2 cut(s) 652, 1161
PspPI GGNCC 1 cut(s) 772
PspPPI RGGWCCY 1 cut(s) 772
PstI CTGCAG 1 cut(s) 1177
PstNI CAGNNNCTG 1 cut(s) 1064
RsaI GTAC 2 cut(s) 523, 604
RsaNI GTAC 2 cut(s) 522, 603
SaqAI TTAA 3 cut(s) 38, 822, 1249
SatI GCNGC 4 cut(s) 5, 8, 727, 1059
Sau3AI GATC 3 cut(s) 106, 568, 642
Sau96I GGNCC 1 cut(s) 772
ScrFI CCNGG 2 cut(s) 131, 467
SduI GDGCHC 3 cut(s) 762, 847, 1164
SfaNI GCATC 5 cut(s) 164, 175, 465, 775, 1077
SfcI CTRYAG 1 cut(s) 1173
SfuI TTCGAA 1 cut(s) 504
SinI GGWCC 1 cut(s) 772
SpeI ACTAGT 1 cut(s) 541
SphI GCATGC 1 cut(s) 78
Sse9I AATT 9 cut(s) 39, 227, 264, 305, 377, 663, 732, 1240, 1246
SsiI CCGC 5 cut(s) 177, 509, 726, 866, 1111
SspMI CTAG 2 cut(s) 221, 542
StyD4I CCNGG 2 cut(s) 129, 465
TaaI ACNGT 6 cut(s) 199, 346, 404, 561, 575, 602
TaiI ACGT 3 cut(s) 324, 796, 991
TaqI TCGA 2 cut(s) 504, 1101
TasI AATT 9 cut(s) 39, 227, 264, 305, 377, 663, 732, 1240, 1246
TatI WGTACW 2 cut(s) 521, 602
TauI GCSGC 1 cut(s) 729
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 38, 822, 1249
Tru9I TTAA 3 cut(s) 38, 822, 1249
TscAI CASTG 2 cut(s) 578, 1197
TseFI GTSAC 4 cut(s) 95, 152, 1209, 1218
TseI GCWGC 3 cut(s) 4, 7, 1058
Tsp45I GTSAC 4 cut(s) 95, 152, 1209, 1218
TspDTI ATGAA 4 cut(s) 263, 665, 981, 1020
TspRI CASTG 2 cut(s) 578, 1197
VpaK11BI GGWCC 1 cut(s) 772
VspI ATTAAT 1 cut(s) 38
XagI CCTNNNNNAGG 1 cut(s) 767
XapI RAATTY 4 cut(s) 227, 264, 377, 732
XceI RCATGY 3 cut(s) 78, 866, 1206
XmiI GTMKAC 1 cut(s) 590
XmnI GAANNNNTTC 2 cut(s) 672, 1127
XspI CTAG 2 cut(s) 221, 542
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.